Carg22216 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22216
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 3313436 .. 3314235 (+)
RNA-Seq ExpressionCarg22216
SyntenyCarg22216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAAATTTTTATGGAAGAACTTAATAAGGCATGTAATAAGGCGTCGATGGGACCCCGTCCGGCCGTCCCTGTGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTTTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGGTGTTTTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATCTTCACAGGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGTAATTTCTTTGGTTCTTGGTTGTTCTTCTCTTTTTTGTTCTTGTTGGTTGCTCTGCTGCTGAAGAAATGGGGAAATTTTTACCAAATTAGTTGTGTGTGTTTTTTTGCTTTGAATTATTAGCTCAGATTTGTTGTTGATTTAGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCATCTGTTTTTATTAAAGAAGCTTTAAGTGGTTGTGTATGTGGTAGCAAATTCTTGCGCACTTACCAAATTTTGCTTTGTTTATATATGAATCATGTCCTCTTTGACTTCACTTATTTAAATTGAGCCACTTGGTACACTGTACAGATGATCTATATGCTTGAATACATGATGTCACGATATCTTTTATGCTTGCATATGGCTCTCTTTAGGGAGTCCCTCAATAGCATAGT

mRNA sequence

TTTAAATTTTTATGGAAGAACTTAATAAGGCATGTAATAAGGCGTCGATGGGACCCCGTCCGGCCGTCCCTGTGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTTTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGGTGTTTTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATCTTCACAGGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCATCTGTTTTTATTAAAGAAGCTTTAAGTGGTTGTGTATGTGGTAGCAAATTCTTGCGCACTTACCAAATTTTGCTTTGTTTATATATGAATCATGTCCTCTTTGACTTCACTTATTTAAATTGAGCCACTTGGTACACTGTACAGATGATCTATATGCTTGAATACATGATGTCACGATATCTTTTATGCTTGCATATGGCTCTCTTTAGGGAGTCCCTCAATAGCATAGT

Coding sequence (CDS)

ATGGAAGAACTTAATAAGGCATGTAATAAGGCGTCGATGGGACCCCGTCCGGCCGTCCCTGTGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTTTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGGTGTTTTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATCTTCACAGGTTGGAGCCTGGGTATCCATTGA

Protein sequence

MEELNKACNKASMGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRRRNLWCFSSSSLPFVCVDPDMIFTGWSLGIH
Homology
[Close]
BLAST of Carg22216 vs. NCBI nr
Match: KAG7015175.1 (hypothetical protein SDJN02_22808 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 3.3e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MEELNKACNKASMGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRR 60
          MEELNKACNKASMGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRR
Sbjct: 1  MEELNKACNKASMGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRR 60

Query: 61 RNLWCFSSSSLPFVCVDPDMIFTGWSLGIH 91
          RNLWCFSSSSLPFVCVDPDMIFTGWSLGIH
Sbjct: 61 RNLWCFSSSSLPFVCVDPDMIFTGWSLGIH 90

[Close]
BLAST of Carg22216 vs. NCBI nr
Match: KAG6577178.1 (hypothetical protein SDJN03_24752, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 7.0e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 13 MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV 51
          MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV
Sbjct: 1  MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV 38

The following BLAST results are available for this feature:
BLAST of Carg22216 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015175.13.3e-45100.00hypothetical protein SDJN02_22808 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6577178.17.0e-11100.00hypothetical protein SDJN03_24752, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg22216 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22216 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22216 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22216-RACarg22216-RAmRNA