Carg22207 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22207
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	nuclear transcription factor Y subunit C-4-like
Location	Carg_Chr16: 3359685 .. 3360077 (+)
RNA-Seq Expression	Carg22207
Synteny	Carg22207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAAGATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCCGAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA

mRNA sequence

ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAAGATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCCGAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA

Coding sequence (CDS)

ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAAGATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCCGAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA

Protein sequence

MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSIPVEMSPFLQS

Homology

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: KAG6577185.1 (hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1    MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
            MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK
Sbjct: 1084 MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 1143

Query: 61   RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
            RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI
Sbjct: 1144 RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 1203

Query: 121  PVEMSPFLQS 131
            PVEMSPFLQS
Sbjct: 1204 PVEMSPFLQS 1213

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_022931515.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita moschata] >KAG7015184.1 Nuclear transcription factor Y subunit C-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120

Query: 121 PVEMSPFLQS 131
           PVEMSPFLQS
Sbjct: 121 PVEMSPFLQS 130

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_022985461.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAA--ELPESETM 120
           RSWMIAM SKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASA+A  +LPESETM
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

Query: 121 SIPVEMSPFLQS 131
           SIP+EM PFLQS
Sbjct: 121 SIPLEMRPFLQS 132

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_023552994.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 3.8e-58
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTT A ASAA +L ESETMSI
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTPA-ASAAGDLAESETMSI 120

Query: 121 PVEMSPFLQS 131
           PVEM PFLQS
Sbjct: 121 PVEMRPFLQS 129

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_038877432.1 (nuclear transcription factor Y subunit C-1-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-50
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTA-ASASAAAELPESETMS 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET TA A+A+A  +L ESE MS
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATATAAAAAGGDLAESENMS 120

Query: 121 IP 122
           IP
Sbjct: 121 IP 122

[Close]

BLAST of Carg22207 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDIFDFLIGLI 97
           D+A+AI  TDIFDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Carg22207 vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDIFDFLIGLI----FHETTTAASASAAAELPESETMSIPVEMSPFLQ 130
           D+A+AI  TDIFDFL+ ++      E   AASA     +       +P    P  Q
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQ 191

[Close]

BLAST of Carg22207 vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-21
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAP++F+KACELF+ ELT RSW+ A ++K+R L + 
Sbjct: 68  HQLPLARIKKIM-KADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRN 127

Query: 78  DVASAILATDIFDFLIGLIFHETTTAASASA 109
           DVA+AI  TD+FDFL+ ++  E       SA
Sbjct: 128 DVAAAIARTDVFDFLVDIVPREEAKEEPGSA 157

[Close]

BLAST of Carg22207 vs. ExPASy Swiss-Prot
Match: Q655V5 (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-21
Identity = 49/79 (62.03%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MISAEAP++F+KACE+F+ ELT RSWM   ++K+R L K 
Sbjct: 100 HSLPLARIKKIM-KADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKN 159

Query: 78  DVASAILATDIFDFLIGLI 97
           D+A+AI  TD++DFL+ ++
Sbjct: 160 DIAAAITRTDMYDFLVDIV 177

[Close]

BLAST of Carg22207 vs. ExPASy Swiss-Prot
Match: Q8L4B2 (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NFYC9 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.0e-21
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDIFDFLIGLIFHE 100
           D+A+A+  TDIFDFL+ ++  E
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPRE 159

[Close]

BLAST of Carg22207 vs. ExPASy TrEMBL
Match: A0A6J1EZM2 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN=LOC111437669 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120

Query: 121 PVEMSPFLQS 131
           PVEMSPFLQS
Sbjct: 121 PVEMSPFLQS 130

[Close]

BLAST of Carg22207 vs. ExPASy TrEMBL
Match: A0A6J1J883 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=LOC111483463 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAA--ELPESETM 120
           RSWMIAM SKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASA+A  +LPESETM
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

Query: 121 SIPVEMSPFLQS 131
           SIP+EM PFLQS
Sbjct: 121 SIPLEMRPFLQS 132

[Close]

BLAST of Carg22207 vs. ExPASy TrEMBL
Match: A0A0A0KZN6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049050 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.0e-48
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET T A   A  +L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPA---ATGDLGESETISV 117

[Close]

BLAST of Carg22207 vs. ExPASy TrEMBL
Match: A0A6J1C6K6 (nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 GN=LOC111008442 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.5e-48
Identity = 101/125 (80.80%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELT+
Sbjct: 1   MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTR 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE        +A E+ +  T+S+
Sbjct: 61  RSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE--------SAGEIADETTVSM 117

Query: 121 PVEMS 126
           P+EMS
Sbjct: 121 PMEMS 117

[Close]

BLAST of Carg22207 vs. ExPASy TrEMBL
Match: A0A5A7TSI3 (Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004550 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET     A+ A ++ ESE +S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET-----AATAGDVGESENISV 115

[Close]

BLAST of Carg22207 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-23
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDIFDFLIGLI 97
           D+A+AI  TDIFDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Carg22207 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-23
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDIFDFLIGLI----FHETTTAASASAAAELPESETMSIPVEMSPFLQ 130
           D+A+AI  TDIFDFL+ ++      E   AASA     +       +P    P  Q
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQ 191

[Close]

BLAST of Carg22207 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-23
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDIFDFLIGLI----FHETTTAASASAAAELPESETMSIPVEMSPFLQ 130
           D+A+AI  TDIFDFL+ ++      E   AASA     +       +P    P  Q
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQ 191

[Close]

BLAST of Carg22207 vs. TAIR 10
Match: AT1G08970.4 (nuclear factor Y, subunit C9 )

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-22
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDIFDFLIGLIFHE 100
           D+A+A+  TDIFDFL+ ++  E
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPRE 159

[Close]

BLAST of Carg22207 vs. TAIR 10
Match: AT1G08970.1 (nuclear factor Y, subunit C9 )

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-22
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDIFDFLIGLIFHE 100
           D+A+A+  TDIFDFL+ ++  E
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPRE 159

The following BLAST results are available for this feature:

BLAST of Carg22207 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577185.1	5.1e-63	100.00	hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931515.1	5.1e-63	100.00	nuclear transcription factor Y subunit C-4-like [Cucurbita moschata] >KAG7015184...	[more]
XP_022985461.1	3.4e-59	93.94	nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]	[more]
XP_023552994.1	3.8e-58	94.62	nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_038877432.1	6.4e-50	87.70	nuclear transcription factor Y subunit C-1-like [Benincasa hispida]	[more]

BLAST of Carg22207 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMP0	1.3e-21	65.82	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FMV5	1.3e-21	51.72	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	2.2e-21	58.24	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q655V5	2.9e-21	62.03	Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q8L4B2	5.0e-21	60.98	Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg22207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZM2	2.5e-63	100.00	nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J883	1.7e-59	93.94	nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KZN6	5.0e-48	85.83	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0490...	[more]
A0A6J1C6K6	8.5e-48	80.80	nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 G...	[more]
A0A5A7TSI3	1.2e-46	83.33	Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Carg22207 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48590.1	9.3e-23	65.82	nuclear factor Y, subunit C1	[more]
AT5G63470.1	9.3e-23	51.72	nuclear factor Y, subunit C4	[more]
AT5G63470.2	9.3e-23	51.72	nuclear factor Y, subunit C4	[more]
AT1G08970.4	3.6e-22	60.98	nuclear factor Y, subunit C9	[more]
AT1G08970.1	3.6e-22	60.98	nuclear factor Y, subunit C9	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 9..97 e-value: 1.3E-30 score: 108.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 15..92
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 19..83 e-value: 2.1E-18 score: 66.3
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 1..103
None	No IPR available	PANTHER	PTHR10252:SF41	HAP5 SUBUNIT OF HAP COMPLEX	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22207-RA	Carg22207-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity