Carg22143 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22143
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr18: 11523656 .. 11524108 (+)
RNA-Seq Expression	Carg22143
Synteny	Carg22143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACAAGTGCATGAACACCCACATCTTGGGCATGCTCTCCTCAGAAATGAAGTACCCGCTGAAGAGGAAAAACCCGGCCAGCAGAACCGTCACCAGCGACAAGCCGGCGATGAAGTTCGGAGATAAGGCGTGTGTTGGCGACGTGGGTGAGGCGGAGGTCGGCGAGAAGGGAGTCGACAGTGGCCTGGATTTGGGATTTACTAGGGAGGAGAAGGCGGGCGGCGAAGGCGAATGTTTCGGAGACGGTTAAGAGAGGGAGACAGGCGTCGTGTTGAGGAACGTAGGTGGAGAGTTTGCGGAAAGTGGAAAGGTTCAGAGTGGAGGAGTTGAGAAGAACGGCTCCATGAGTCGGGGTGGTTCGAGCGGCGAGGATATCAAGAAGAGTGGATTTTCCGGCGCCGCTTGGGCCGACAATGGCGAGAATTTGAGAAGGATGCGCTGTGAATGA

mRNA sequence

ATGGACAACAAGTGCATGAACACCCACATCTTGGGCATGCTCTCCTCAGAAATGAAGTACCCGCTGAAGAGGAAAAACCCGGCCAGCAGAACCGTCACCAGCGACAAGCCGGCGATGAAGTTCGGAGATAAGGCGTGTGTTGGCGACGTGGGTGAGGCGGAGGTCGGCGAGAAGGGAGTCGACAGTGGCCTGGATTTGGGATTTACTAGGGAGGAGAAGGCGGGCGGCGAAGGCGAATGTTTCGGAGACGAGAGGGAGACAGGCGTCGTGTTGAGGAACGTAGGTGGAGAGTTTGCGGAAAGTGGAAAGGTTCAGAGTGGAGGAGTTGAGAAGAACGGCTCCATGAGTCGGGGTGGTTCGAGCGGCGAGGATATCAAGAAGAGTGGATTTTCCGGCGCCGCTTGGGCCGACAATGGCGAGAATTTGAGAAGGATGCGCTGTGAATGA

Coding sequence (CDS)

ATGGACAACAAGTGCATGAACACCCACATCTTGGGCATGCTCTCCTCAGAAATGAAGTACCCGCTGAAGAGGAAAAACCCGGCCAGCAGAACCGTCACCAGCGACAAGCCGGCGATGAAGTTCGGAGATAAGGCGTGTGTTGGCGACGTGGGTGAGGCGGAGGTCGGCGAGAAGGGAGTCGACAGTGGCCTGGATTTGGGATTTACTAGGGAGGAGAAGGCGGGCGGCGAAGGCGAATGTTTCGGAGACGAGAGGGAGACAGGCGTCGTGTTGAGGAACGTAGGTGGAGAGTTTGCGGAAAGTGGAAAGGTTCAGAGTGGAGGAGTTGAGAAGAACGGCTCCATGAGTCGGGGTGGTTCGAGCGGCGAGGATATCAAGAAGAGTGGATTTTCCGGCGCCGCTTGGGCCGACAATGGCGAGAATTTGAGAAGGATGCGCTGTGAATGA

Protein sequence

MDNKCMNTHILGMLSSEMKYPLKRKNPASRTVTSDKPAMKFGDKACVGDVGEAEVGEKGVDSGLDLGFTREEKAGGEGECFGDERETGVVLRNVGGEFAESGKVQSGGVEKNGSMSRGGSSGEDIKKSGFSGAAWADNGENLRRMRCE

Homology

[Close]

BLAST of Carg22143 vs. NCBI nr
Match: KAG6574211.1 (hypothetical protein SDJN03_28098, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 9.9e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MDNKCMNTHILGMLSSEMKYPLKRKNPASRTVTSDKPAMKFGDKACVGDVGEAEVGEKGV 60
          MDNKCMNTHILGMLSSEMKYPLKRKNPASRTVTSDKPAMKFGDKACVGDVGEAEVGEKGV
Sbjct: 11 MDNKCMNTHILGMLSSEMKYPLKRKNPASRTVTSDKPAMKFGDKACVGDVGEAEVGEKGV 70

Query: 61 DSGLDLGFTREEKAGGEGECFGD 84
          DSGLDLGFTREEKAGGEGECFGD
Sbjct: 71 DSGLDLGFTREEKAGGEGECFGD 93

[Close]

BLAST of Carg22143 vs. NCBI nr
Match: RDX84802.1 (hypothetical protein CR513_34091, partial [Mucuna pruriens])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 47  VGDVGEAEVGEKGVDSGLDLGFTREEKAGGEGECFGD--ERETGVVLRNVGGEFAESGKV 106
           VG VGE+E GE+G D G ++G   EE  GGE E FGD  ERE G+VL +VGGE +E G  
Sbjct: 68  VGQVGESEFGEEGGDGGAEVGVGFEE-LGGEEEGFGDGEEREAGIVLGDVGGELSEGGGD 127

Query: 107 QSGGVEKNGSMSRGGSSGEDIKKSGFSGAAWADNGENLRRMRC 148
           + GGVE   ++    +  E++++   SG+AWA +G++L R+ C
Sbjct: 128 ERGGVEPELTVGGESAGRENVQEGRLSGSAWAHHGQDLARLGC 169

[Close]

BLAST of Carg22143 vs. ExPASy TrEMBL
Match: A0A371G2M3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_34091 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.5e-11
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 47  VGDVGEAEVGEKGVDSGLDLGFTREEKAGGEGECFGD--ERETGVVLRNVGGEFAESGKV 106
           VG VGE+E GE+G D G ++G   EE  GGE E FGD  ERE G+VL +VGGE +E G  
Sbjct: 68  VGQVGESEFGEEGGDGGAEVGVGFEE-LGGEEEGFGDGEEREAGIVLGDVGGELSEGGGD 127

Query: 107 QSGGVEKNGSMSRGGSSGEDIKKSGFSGAAWADNGENLRRMRC 148
           + GGVE   ++    +  E++++   SG+AWA +G++L R+ C
Sbjct: 128 ERGGVEPELTVGGESAGRENVQEGRLSGSAWAHHGQDLARLGC 169

The following BLAST results are available for this feature:

BLAST of Carg22143 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574211.1	9.9e-39	100.00	hypothetical protein SDJN03_28098, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RDX84802.1	2.0e-10	45.63	hypothetical protein CR513_34091, partial [Mucuna pruriens]	[more]

BLAST of Carg22143 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22143 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371G2M3	9.5e-11	45.63	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_34091 P...	[more]

BLAST of Carg22143 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22143-RA	Carg22143-RA	mRNA