Carg22104 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22104
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase III subunit RPC3
Location	Carg_Chr18: 11362511 .. 11369470 (+)
RNA-Seq Expression	Carg22104
Synteny	Carg22104

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTCGCTTACCCAACCAGTTGTTCTCCCGCCATGTCCTTCAACCTTGTACAGATCAATTTTCGCTCACCTTTTTCCCACCGGAGCATGAGTTTTTAAGCGGTACGCCTCACTATTGCTCTCTTATCGTCTCTCTACTCGGTTGAAGCGAAGATTTTCGATGTTTCAAGCATCTACACTATAGTTTCTGCTGAATCAGTGCTTTATGAGCTTACAGTTCGTCAATGTCAATTCCAATTACTTCAAAATACTTGATATCATAGACGCACGGCAATCTTAAAGAAGGAAATCATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGGTATGCCTTTTCTTTTCTAATCCTTGCTTCAAATCTTGATTCGTGTCATGTTATCAGCCTGTTCTTCTTCGTATCATCGTTTTTCATTAATATTGACTGTGCATTGACAGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTATAATGAGTTTTCATTCATGGAGAAACTTCTGAGTCTATGGTATTTTTTTTGGTAAATTGTTTGGTTAATTAGTGACAATAAGCTCATTGGCTAAAAGAATAACCATTTTACCTTAAATAGAATCTGGATTTTAGAACTGAGTTCGATTAAGTTCATATAACCGGGATTATATAGCGTCATTTAAAATAATGTATCTATGCTCAGTTTAAGCCCGTTCGTTTTCTAAATTTATCAACTTTGATAGGTAGTTATTTTATGGAACCATATTGACACTATTAGGTAATTGGTGTGTTAAGAAGGTAGTTGTATTCTCGAATAGGACACCATGTGTTTGCAGATTGAGCTTCTTATCATCGTTATTGTAAATGCACGTGTAGGTGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATGTTAGTTCATATACTCACATTGGTAAAACTCTTGTTGAGAATTTTCAACTTCGAGGGAATTTAGATTCTTAACTTATGTTTCTGATTTCGTAGTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGCAAGTTTTTTACCTGGTATTTTTATTTGCATTTTGCTATTTACTTCTATCTGCAGTATTTTTTAATATGCTACGTTCTCCTAGTGCCATAAAATCGTGTATTGATTTAAATTTTTAAGAGGAACGTTATTGATCAGAAAAGGGAGATTTTAAGATTGATGGATCCCAGAGATCATTTCTATATCATTCATGTCAGTCTTAATATCAGATTTTATTATCACCTCTTGACTTGATTGGGATTTCAGTTATCAATTAAATTTTTATTTGTTTCAAGAAAAAAAATCGTTTTTCTTTCAACCTCATCTTGTTTAGAAGAGTGAAATTGGTGCTTAATCCTAAAACTGTGATATGTTTTCGTTGAACTTTCTGATCAAGTACATCAATGAAGAAATAACATAATTTAGAAGGCGGCTCTTGTACTGAGAATGTGTTTGACTTGTATTTGAATATGCCACTTATATAAAACGTTTGGTTTCTGAGGTATTGTTTCTGTATTTTCAGGAAACCGTCCAATTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTAGCTGAATTTATGTGAAACTTGTCATGCATATTGGTGCTAAATATCATCTTTGAGTCATTAAATGGATCCATGACAGGTATCTGAGGTGCCACCGACCTTAGAGCAACGTCTTGTAGAATCAGCCCGTCCTATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGGTATGTATGAGATTATCGTATCAAATTACCTAGCTGAAACATGTTTGGTACTTGCTCACAATTTTTCTGTAGCGCAAGCGAGGTGATCTGGATACGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGTTGGTGTTATTTTTTCCTTCAGAATTTCTTATATATTCTAACTAGATCATATGAAATTACAGTGAATGTGATGCTCCTTTCTTGTATCCACATTATTGATGAGAAAGAAAATAAGGCATGACAAATGCCCACCCCTTGGTCCAGTTTCGGTTGTACAAGCGGGCAGAGCATTCTTTTCAAAAAAAGAAGGCATGACAAATATGAACAATTTACTTTAACTCCCTTGAAACCTATTGATAGAGTACTTCTATGTAATGGGAAAAAAAAAGCGCAACCTAGATGAGGGACCCGAGCCTATGGAGCACAAATCAAACAAAAGGCCCCGAATATAAAATAATGAGGAGAGAAGGCATGTTAATGAAGGATTTGTGTAGAGCACTCCAATTATTGGAGGTTGTATACTGTATGTTTTATCAAGTTGGTAGCTGACACATGCCAACTTTGTACAAAAATGAGGGGAAAACTGTACTTAAATTCACAAGTTCTTAAACTCAAAATATCTCTCTCTGTTGAATATTTGATAAATCATTAACTTGATTTTAAATTAATTGTTCATCCCATGCTAACTCCCCCCCTATATCTTATGGTCAATTCAAATGGTAATTGCATCAATATCTTACTATGGCTCTAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAATCTAATGTTGGTGTAGATTTCTAAAGGAGTTTAGTTATGCACGTATTTGATCTTGATGCACATTGATCGTATAAAAATACATGTTGTGAGTTGGTACTAGAAGGAATTGTGTGGGCGCTCTTTTGAAGACAATTCTCTATTTTTAAAAATAAAAATATTAGTGAAAGCATGTTGGCATATTTACTTTTTACAGGCTGTTTTCTCATGTTTTCTTTTAATTTGTTTTTAAAGATGATTTGATTCTTAAAACAATTGAAATTATTTTTTCTAGAACTATTGCCTCGTAAATAATGATCAAGTGCAGAACAAGGCTAATCTTTCTGAGCCTTCTCCTTCAAATTTTAAAGTTAAAAGCAGAAAACTGTTTTTCAAGATGGCTTTCAGGATTCATATTTGATTTTATCATGTAAAGAATTCATTTACTTCAATGCAGACAATAATGACCTTTGCAAAGCCTGCCAGTAGAGTAAAGCAAAAAAATGAGAATTTTTGGGGCACTTTATCAGTATCATTAACCAGCATGCACATTATATTTTGTGCTCTTATTACGTTCTTTCCTGTTCCACCTCTTTTACATAATATGTTTCTTAAACTGAGTAATAGTTTCTTGGCTTCTTTTATCTAGACTCCTTTTCTTGTTATGTTACTCTATGATGGAGGTCTAGTTGGATGCTTGGTTCATGATGCATTTTGTTAAGACTAAATCATGAACGATAGGCCTTAAGAAATATAAGAAAATGATACATGATTTGGAAACTAGCGCAGAAATGTGTTTCCCTTTACCACTTATGTCCACTTTTATGTCTCCTGTCCCAAAACTTCAATTGTTTGCAGTTCCTTTGTCACTGGATAACATATACGAGGAGGTAATGAAGAATGAAGTAGGACGCAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATAAAATTAGTATGTTCACCCTCTGTTAAACTAAGTTTTCCCGATGTGTTTAATTTCCACACTTCCCATCTGATTTACTTTAAATTTCTTCTAAAATCCTTTGCTTGCCCAGATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTTCTCTCTCCCTCTCATTTATTTAGTGAAAAATACACCCTTGTTCTCTGAAATTTGAGAAATTACATGTCTTCGTTCTTAAATTTTAAAAATGACATCTTATTGCTTGCGCAACCAGTTGATTGAAATCTCTTATCTGAGATAATTTGTTAGCAAGCATGATTCTTCTCTTATCCCTTGCACTTACAGACAAGTAATAATTTATAATGAACTAACTTCAATTTTCTTGATTGCAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAGGAGTTATTGGTCGGTCAGTTGCTATCAAGGTTGTCTAGCTACCAAAAAAGCATGTATGCATTTGTAATATGCCTTTCATTTTATCTAGAAATGTATGTAATTTACACGTGAATGCAACTAATACATAATTGAACATCCATATATAATATACGGTTGGTTTTAAAATTCAACTTGAGCGTTAATTAAGGAGTAACAACCTAATAATATAATGGGCTGACCTTACCAATAGTTGTCTTTTTAATCTAGTAAAGATTACATGGAATTGTTATTTTTGTACTTAGTATTCTGAAATTGACTATTGGTAAAAAAAAATTGTTTATTTAATTTACAGATTTTCCATGTCTTTTTTCTGTAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGGTAAACATCTTTGCTCTGTATGCATGTGTTTTTGCATCCGGATTCATATATTTACGTCGTGAAGCAAAGATACTGTACTCCTTTTTCTCCCAATAAGAAGCATGACATTATTCATTGATAGAGTTGAAAAACACAAAGTGGGACCATGGAGGAAGGACACAGTACTGGATTGCTTGTTTGAGTTTGATGGCATTGGACGTATTGGTTTTCAGAATGTTAGTTAAATGCTGAGATAACTGTGCAATTAGACATTGGACCTAACTAGAAAAAATATTAAAGGATAGTTAATGTTTGATCAGGTATCATTATGTTTTCTTATCAGAATTGGTTGTAGTTTAAATTAGCAACTTTGCACATCTTTGATTTAAGTTTTCCTTTTAGACTTGTTATTATGCACCTACAAATCTTATTCGTTTTATTGTTTTGCTGTACTTATCTTTTATTTTATTTTATTTTTGATATTTACGTATCTAAAAGTCTATATCATACCACATCTAGTAAGAATGTGTTTTGTCTCTATTTCTTCATTACTGTGTATCATCTTGTACCTACACTGGCTAGACATCTCTTTTTCCACTTGAACGATTTACATTGTTAACCTTTTTGGGGGATTCATCCTAGTAACACAATCTATCTTTTGTTGCAGAAAGTAGCTATAACAGTTCCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGGTTAGTGTGCACAACATTCTAATAAATTCATATATGCAATTGTAATGGTATTAGGTTCTATTAGACTTCTCTAACAGAGATATTGGCCAAGTGTGCATCTGATCACTGATAACTTTATCTTCAGTCATCTTATTCACGTATTTCCTTCCTACTAGAGAAATCGAGTCTTACCTTTTGATGTGGTTTATCATGGCAGAACCTAAAATTGCATTTATCCTACCGGTTTTAGTACTCTAAGAGGCCGAATGCAGCTTGCTTCCTAATTTTATTAATGATGTCTATTTTAAAAATCACCTTTTGGTCCCATGTCCCTGAATTTTAACAATTTAGTTTTTGAACTTTGATTTGTAACAATATAGTACATTCAATTTTGCAACAATTTTATCTTTGTATTTTCAAGTTCTAACCATTTAATCTCTATTGAAAATTTAATAGAATTTCAATAAACTAATTAGGGACCCAATAGCTTTATAGAGTATAAAGTCTAAACCCTAAATTCAAATTTAGGGCCAAACCATTAGTTCCTCTTTCTCTCTTGATGAAGCTCTAGCATTGAATAATACAATGGCTAAAGCTTGATTCATATGGGGCCGATGGCTAATTCCTCCTCCATAAACAGCGAACGTCAGAATTCGTCATCAGTTATTCCTATGTCTACAGAGGCTTGGAGTTCTCTAAAGAAGTGCAAAAACGATCTAATAAAGTCTATCCATCCAAAAAACTAAGCTTTTAATGAAGTTGTTCTAAAGGATCATTCCTTCCATGTTTTCTCACTGTGTGTGTATGTGGGAATGTTCAAAAACTGACTCCTTGCTGTGGCAACCAACTCTTTTGCAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAATACGAAGGATTTATAGATCAGTAGCTCCTTGAAGAGTGAATGTGGAGGAAGCCTTGCCCATCTTTTAGACTTGCAAAATAAAATTATGATTAGCAGTGTTTTCTTCTTCCCATTAGGATACAGGAACTTCCATCTTCCTTATAAATATTGTTTGATTAAGGTTAATTATGGAATATGGCAAATGGCCTTCCTGAGTATACTTTTTATTAT

mRNA sequence

GCACTCGCTTACCCAACCAGTTGTTCTCCCGCCATGTCCTTCAACCTTGTACAGATCAATTTTCGCTCACCTTTTTCCCACCGGAGCATGAGTTTTTAAGCGGTACGCCTCACTATTGCTCTCTTATCGTCTCTCTACTCGGTTGAAGCGAAGATTTTCGATGTTTCAAGCATCTACACTATAGTTTCTGCTGAATCAGTGCTTTATGAGCTTACAGTTCGTCAATGTCAATTCCAATTACTTCAAAATACTTGATATCATAGACGCACGGCAATCTTAAAGAAGGAAATCATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGAAACCGTCCAATTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCACCGACCTTAGAGCAACGTCTTGTAGAATCAGCCCGTCCTATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGCGCAAGCGAGGTGATCTGGATACGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTGTCACTGGATAACATATACGAGGAGGTAATGAAGAATGAAGTAGGACGCAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAGTTCCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAATACGAAGGATTTATAGATCAGTAGCTCCTTGAAGAGTGAATGTGGAGGAAGCCTTGCCCATCTTTTAGACTTGCAAAATAAAATTATGATTAGCAGTGTTTTCTTCTTCCCATTAGGATACAGGAACTTCCATCTTCCTTATAAATATTGTTTGATTAAGGTTAATTATGGAATATGGCAAATGGCCTTCCTGAGTATACTTTTTATTAT

Coding sequence (CDS)

ATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGAAACCGTCCAATTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCACCGACCTTAGAGCAACGTCTTGTAGAATCAGCCCGTCCTATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGCGCAAGCGAGGTGATCTGGATACGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTGTCACTGGATAACATATACGAGGAGGTAATGAAGAATGAAGTAGGACGCAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAGTTCCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAA

Protein sequence

MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF

Homology

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: KAG6574180.1 (DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013236.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1020.0 bits (2636), Expect = 7.3e-294
Identity = 522/522 (100.00%), Postives = 522/522 (100.00%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_022945853.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata])

HSP 1 Score: 1017.3 bits (2629), Expect = 4.7e-293
Identity = 520/522 (99.62%), Postives = 521/522 (99.81%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEF+RCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_023541704.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1015.0 bits (2623), Expect = 2.3e-292
Identity = 519/522 (99.43%), Postives = 520/522 (99.62%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRP PDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPSPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAIT+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_022968436.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima])

HSP 1 Score: 1013.4 bits (2619), Expect = 6.8e-292
Identity = 518/522 (99.23%), Postives = 521/522 (99.81%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLL+RFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_038878061.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_038878062.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida])

HSP 1 Score: 939.5 bits (2427), Expect = 1.2e-269
Identity = 468/522 (89.66%), Postives = 504/522 (96.55%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELTSSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSN+LHRMRFSKFLAIASEKL KDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNVLHRMRFSKFLAIASEKLRKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SSKHAGNRPIPD+V++SL KLLNAHFVERCPAPEP+LSP+V
Sbjct: 121 EGLLQNGRLSMEQMVERAQSSKHAGNRPIPDIVHDSLFKLLNAHFVERCPAPEPSLSPKV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPP+KRGAKAAK+SEVP TLEQR+VESARPMEV+RFS+G+TNTEAE+SEHYS ISGQ
Sbjct: 181 EEQPPPKKRGAKAAKISEVPETLEQRVVESARPMEVLRFSMGDTNTEAEKSEHYSQISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  DL+ +Q+SGDAD +ILWRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKHDDLEMVQDSGDADSVILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS+LGC GM+DY+INL+K
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSSLGCPGMDDYQINLRK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL
Sbjct: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LPPD R  PL KR++RL+ VR LL+SSLLKLDDALMLFHDF
Sbjct: 481 SLPPDNRNEPLMKRFDRLKKVRGLLQSSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. ExPASy Swiss-Prot
Match: Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.4e-27
Identity = 126/495 (25.45%), Postives = 220/495 (44.44%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  Q+  +L +L+QHN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  S +L  +R+ +++   ++ L  D   E ++E L
Sbjct: 62  LV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+L+M  ++    +R   +   G       V+ + ++L + HFV+RCP+  PT    
Sbjct: 122 LLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-VPTTENS 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISG 243
               PPP    A    ++E    L  +L             IG+        E   +   
Sbjct: 182 DPGPPPP----APTLVINEKDMYLVPKL-----------SLIGKGKRRRSSDE--DAAGE 241

Query: 244 QKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAIL- 303
            K KR    T  +    D  I W+AN D F +  R +A +  V ++ D  +  ++  +L 
Sbjct: 242 PKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLR 301

Query: 304 --EATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 363
             E T SS        T PLS + I+        + K  + + +TL  D     +   G 
Sbjct: 302 MSEITTSS----SAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 361

Query: 364 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 423
           SG   Y INL K +       +ES+V +R+G    R+FR + +    +E +++ D A + 
Sbjct: 362 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQVEDFAMIP 421

Query: 424 KNEAPKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNL 481
             EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL
Sbjct: 422 AKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSIANL 461

[Close]

BLAST of Carg22104 vs. ExPASy Swiss-Prot
Match: Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.2e-26
Identity = 127/494 (25.71%), Postives = 221/494 (44.74%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  Q+  +L +LIQHN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  + +L  +R+ +++  A + L  D   E ++E L
Sbjct: 62  LV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA-KTLYSDTG-ELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+++M  ++    +R   +   G       V+ + ++L++ HFV+RCP    T +  
Sbjct: 122 LLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPLVPATENSD 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISG 243
               PP     A    VSE    L  +L             IG+        E  +    
Sbjct: 182 TGPPPP-----APTLVVSEKDMYLVPKL-----------SLIGKGKRRRSSDEDATGEPK 241

Query: 244 QKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILE 303
            KR +   D  +   D DG I W+AN D F +  R +A +  V ++ D  +  ++  +L 
Sbjct: 242 AKRPKQTTDNKEPIPD-DG-IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 301

Query: 304 ATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGCS 363
             R SE    +    T PLS + I+        + K  + + +TL  D     +   G S
Sbjct: 302 --RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS 361

Query: 364 GMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDK 423
           G   Y INL K +       +ES+V +R+G    R+FR + +   L E +++ D A +  
Sbjct: 362 GGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 421

Query: 424 NEAPKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQ 481
            EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL 
Sbjct: 422 KEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 461

[Close]

BLAST of Carg22104 vs. ExPASy Swiss-Prot
Match: Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-25
Identity = 120/495 (24.24%), Postives = 219/495 (44.24%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T+ S  Q+  +L +LI HN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E L
Sbjct: 62  LV---------IYHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+++M  ++    +R   +   G       V+ + ++L + HFV+RCP     L P 
Sbjct: 122 LLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPD 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVI-RFSIGETNTEAEESEHYSSIS 243
            +   P              PP     LV + + M ++ + S+         S+     +
Sbjct: 182 TDSSDPG-------------PPPPAPNLVINEKDMYLVPKLSLIGKGKRRRSSD--EDAA 241

Query: 244 GQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAIL 303
           G+ + +    T  E    D  I W+ N D F +  R +A +  V ++ D  +  ++  +L
Sbjct: 242 GEPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 301

Query: 304 EATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 363
              R SE    +    T PLS + I+        + K  + + +TL  D     +   G 
Sbjct: 302 ---RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGD 361

Query: 364 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 423
           SG   Y INL K +       +ES++ +R+G    R+FR + +   L E +++ D A + 
Sbjct: 362 SGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIP 421

Query: 424 KNEAPKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNL 481
             EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL
Sbjct: 422 AKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANL 460

[Close]

BLAST of Carg22104 vs. ExPASy Swiss-Prot
Match: Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.1e-24
Identity = 119/492 (24.19%), Postives = 219/492 (44.51%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T+ S  Q+  +L +LI HN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E L
Sbjct: 62  LVL---------YHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+++M  ++    +R   +   G       V+ + ++L + HFV+RCP    T S  
Sbjct: 122 LLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSS- 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISG 243
            +  PPP              PTL   ++       V + S+         S+  ++   
Sbjct: 182 -DRGPPP------------PAPTL---VINEKDMYLVPKLSLIGKGKRRRSSDEDATGEP 241

Query: 244 QKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILE 303
           + +K    D  + S D DG I W+ N D F +  R +A +  V ++ D  +  ++  +L 
Sbjct: 242 KAKKPRYTDNKEPSPD-DG-IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLR 301

Query: 304 ATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGCSGM 363
            +  +        T PLS + I+        + K  + + +TL  D     +   G SG 
Sbjct: 302 MSEITTP-SSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGG 361

Query: 364 EDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNE 423
             + INL K +       +ES++ +R+G    R+FR + +   L E +++ D A +   E
Sbjct: 362 GMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPAKE 421

Query: 424 APKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLR 481
           A  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R
Sbjct: 422 AKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIER 460

[Close]

BLAST of Carg22104 vs. ExPASy Swiss-Prot
Match: Q55FJ5 (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=44689 GN=polr3c PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.7e-15
Identity = 139/672 (20.68%), Postives = 262/672 (38.99%), Query Frame = 0


Query: 6   YGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTE----LSSSQINNSLLILIQ 65
           Y  K A+ I+   FG+ V KV E L++RG  + +++ +       L+  +I   LL+LIQ
Sbjct: 2   YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61

Query: 66  HNCV---QAFTAVTEGEF-----GDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKD 125
           HN V   +    +T+ E      G+   +D+ Y A+  N +HR+RF KF+     K  K 
Sbjct: 62  HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYI--KHSKG 121

Query: 126 KDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVV----NESLLKLLNAHFVERC 185
            +   +LE L+ +GRL M+ +I++A   +        D +     ++  KL+   F+ R 
Sbjct: 122 DEAAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRA 181

Query: 186 PAPEPTLSPQVEE--QPPPRKRGAKAAKVSEV----------------------PPTLEQ 245
           P P P    +         +K G   A  + V                      P +   
Sbjct: 182 PRPRPVSDQETSNALSKEAKKVGGGGANGNNVGAHQKKDSDPFALPSVGFSSNGPLSSVD 241

Query: 246 RLVESARPMEVI----------------------------------RFSIG--------- 305
                A  +E++                                    S+G         
Sbjct: 242 NSANDAESLEILTGKSSTTTIPSQPKKGTAKKTSAKPKSTAINTTATASLGRKRKSRDIY 301

Query: 306 -------------ETNTEAEESEHYS-------------SISGQKR-KRGDLD------T 365
                        E N E   ++H S             + +GQ   K+  LD      T
Sbjct: 302 DEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTKTGQHTLKKSKLDQSSSTTT 361

Query: 366 IQESGDADGI----------ILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILE 425
                  +G+          +LW  N+++FI   + KAC + V  + +  +  + +A+++
Sbjct: 362 TSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVK 421

Query: 426 ATRSSEKIVKTEITVPLSLDNIYEEVMKN-EVGRSMTLDRVEASLSAL------------ 485
             + S +  +  +T  +  +NI EE  ++ +  + M   ++E  LS +            
Sbjct: 422 LCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMV 481

Query: 486 ------GCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK 523
                   S +  Y++N+  II   +   VESI+ +++G +  R+F+ L     L+E ++
Sbjct: 482 SKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLL-LIKNLLEPKQ 541

[Close]

BLAST of Carg22104 vs. ExPASy TrEMBL
Match: A0A6J1G256 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LOC111449973 PE=3 SV=1)

HSP 1 Score: 1017.3 bits (2629), Expect = 2.3e-293
Identity = 520/522 (99.62%), Postives = 521/522 (99.81%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEF+RCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. ExPASy TrEMBL
Match: A0A6J1HUV1 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC111467684 PE=3 SV=1)

HSP 1 Score: 1013.4 bits (2619), Expect = 3.3e-292
Identity = 518/522 (99.23%), Postives = 521/522 (99.81%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLL+RFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. ExPASy TrEMBL
Match: A0A6J1CHB3 (DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=LOC111011656 PE=3 SV=1)

HSP 1 Score: 934.5 bits (2414), Expect = 1.9e-268
Identity = 473/522 (90.61%), Postives = 500/522 (95.79%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1   MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61  QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERAKSSKHAGNRPIPDVV+ESL KLL AHFVERCPAPEP LS QV
Sbjct: 121 EGLLQNGRLSMEQLVERAKSSKHAGNRPIPDVVHESLFKLLTAHFVERCPAPEPILSAQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPP+KRGAKAAK+SEVP TLEQRLV  ARPMEV+RFS+ ETNTEAE+SE    ISGQ
Sbjct: 181 EEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEVLRFSMSETNTEAEKSE--LPISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  +L+ +QESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC GM+DYKINL+K
Sbjct: 301 TRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCPGMDDYKINLRK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+T PRHSLCLLWRVD+YNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 SLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 520

[Close]

BLAST of Carg22104 vs. ExPASy TrEMBL
Match: A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 886.3 bits (2289), Expect = 6.1e-254
Identity = 443/522 (84.87%), Postives = 485/522 (92.91%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLAIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SS  AGNRPIPDVV++SL KLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAK+ EVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEHYS ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  +L+  Q+SG ADG ILWRAN+DEFIRCLRHKAC+EHVRSQFDDG VNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           I+EQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LP D    PL K+ +    VR LL SSL+KLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. ExPASy TrEMBL
Match: A0A0A0LBF3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=3 SV=1)

HSP 1 Score: 879.0 bits (2270), Expect = 9.7e-252
Identity = 443/522 (84.87%), Postives = 485/522 (92.91%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SS  AGN PI DVV++SL KLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EE PPPRKRGAKAAK+SEVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEH+S ISGQ
Sbjct: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  DL+  Q+SGDADG ILWRAN+DEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LP D    PL K+ +   NVR LL SSL+KLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]

BLAST of Carg22104 vs. TAIR 10
Match: AT3G49000.1 (RNA polymerase III subunit RPC82 family protein )

HSP 1 Score: 459.1 bits (1180), Expect = 4.6e-129
Identity = 251/536 (46.83%), Postives = 371/536 (69.22%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTE--LSSSQINNSLLI 60
           M+ +++GI YA+HIIT  FG++V+KVCE LLR+GPL+ R + R  E  ++ +++ + L +
Sbjct: 1   MSMSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYL 60

Query: 61  LIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEE 120
           LIQHNCVQAF+   E   G   KA  QY+ LF+NILHR+R++KF  I +E+L  D  C  
Sbjct: 61  LIQHNCVQAFS--IEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEEL--DSKCGA 120

Query: 121 LLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSP 180
           +L+GLL NGRL++ Q IER + S   GN    + + +SL KL+ A FVER P+PEP L  
Sbjct: 121 VLDGLLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLGN 180

Query: 181 QVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFS-IGETNTEAEESEHYSSI 240
             +E+ P ++RGAKAAK+ + P TLE+++VE+A P++ IRF  I E ++ +  ++  S+I
Sbjct: 181 --KEKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSNI 240

Query: 241 SGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAI 300
           +  KRK+ D+DT     D+   ++WR NF+EFI  LRHKAC+E V+ + D+G   VL A+
Sbjct: 241 TEGKRKQRDVDT----SDSSSGVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAM 300

Query: 301 LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGM------ 360
           LE  RS EK VKT+ + P+S+ +IYEEV+K E GR+M  +RVEA L  L  +        
Sbjct: 301 LEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFV 360

Query: 361 ----EDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFV 420
               + Y ++ + II  AQ DE+E++V++RYG++A+RMFR+LS+ G  VET+KI+D+A  
Sbjct: 361 NEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALT 420

Query: 421 DKNEAPKILYRLWKDEYLYMEKVAITVP-RHSLCLLWRVDRYNLWEHVLDEMYHASLNLQ 480
           +K + P+ L ++WKD YL+M+K+A+T P  ++  LLW+V++  +   +LDEMYHASLNL 
Sbjct: 421 EKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLS 480

Query: 481 LRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           LR A+E+E +KELL LP DK  GPL++R  +++  R+LL S++ KLDDA+MLFHDF
Sbjct: 481 LRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523

The following BLAST results are available for this feature:

BLAST of Carg22104 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574180.1	7.3e-294	100.00	DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma su...	[more]
XP_022945853.1	4.7e-293	99.62	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata]	[more]
XP_023541704.1	2.3e-292	99.43	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo]	[more]
XP_022968436.1	6.8e-292	99.23	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima]	[more]
XP_038878061.1	1.2e-269	89.66	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_...	[more]

BLAST of Carg22104 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BUI4	6.4e-27	25.45	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P...	[more]
Q2TBL4	3.2e-26	25.71	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=...	[more]
Q5XIL3	1.6e-25	24.24	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po...	[more]
Q9D483	5.1e-24	24.19	DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ...	[more]
Q55FJ5	9.7e-15	20.68	DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of Carg22104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G256	2.3e-293	99.62	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HUV1	3.3e-292	99.23	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CHB3	1.9e-268	90.61	DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3AYY3	6.1e-254	84.87	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0LBF3	9.7e-252	84.87	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]

BLAST of Carg22104 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49000.1	4.6e-129	46.83	RNA polymerase III subunit RPC82 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 3..76 e-value: 3.2E-22 score: 80.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 91..176 e-value: 2.0E-20 score: 74.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 358..446 e-value: 1.8E-20 score: 74.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 265..357 e-value: 3.1E-8 score: 36.2
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 10..69 e-value: 1.4E-22 score: 79.6
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 156..338 e-value: 5.3E-17 score: 62.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..246
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 4..522

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22104-RA	Carg22104-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding