Carg22098 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22098
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	25.3 kDa vesicle transport protein
Location	Carg_Chr18: 11347240 .. 11347882 (-)
RNA-Seq Expression	Carg22098
Synteny	Carg22098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGCTGACAATGGTGGGAAGGGTTAGGGATGGAGTGCCACTTGCACAAGGCATTAGGTATGTCAATGAAGAGAATGACGATGTTTTGGGGTACAAACAGCAAGCTGAGTTCATACTCAAACAGATCTCTAGAGGGGCTTTGTCACCTCCAAAAATGGTCATTCAAATGCATCATCACTCTTTCATGTACCGTTCTAACTCTCTTTTCTTTACGTTGATTTCGACATATCGGATTCAAATATCCTTCTAAGCTCAATTCAATCTCGATCGAGTTTAAATTTTCTCAACCCCATCTTAAAATATTGGGTTGGGTCGGGTTGTATCAACTCAACTCATAATTTTTCTTTTTTTTTTTTTGTGTTACATCAATTAGTTACTTGATCGAGAACGGAGTGTGTTACATGACGTTATGCGATTCTTTATACCCAAGAAAGCTGGCTATCCATTACTTGCAAGATCTGCAAAGGGAGTTTTCCAAGTTTGATGATGCCCTACTAAACAGCCTTATCAAACCCTATAGTTTCCCCAAATTTGGTAACCTTTCTCAACCCTCTTCATCCATGCCTGCCCGACTTAGGGCAAAAATAAAAGAATATATGTCTTATTCTCGCTCGTGTCCCTACTTTACCTCCTTCTAA

mRNA sequence

ATGGTGAAGCTGACAATGGTGGGAAGGGTTAGGGATGGAGTGCCACTTGCACAAGGCATTAGGTATGTCAATGAAGAGAATGACGATGTTTTGGGGTACAAACAGCAAGCTGAGTTCATACTCAAACAGATCTCTAGAGGGGCTTTGTCACCTCCAAAAATGGTCATTCAAATGCATCATCACTCTTTCATGTACCGTTCTAACTCTCTTTTCTTTACTTACTTGATCGAGAACGGAGTGTGTTACATGACGTTATGCGATTCTTTATACCCAAGAAAGCTGGCTATCCATTACTTGCAAGATCTGCAAAGGGAGTTTTCCAAGTTTGATGATGCCCTACTAAACAGCCTTATCAAACCCTATAGTTTCCCCAAATTTGGTAACCTTTCTCAACCCTCTTCATCCATGCCTGCCCGACTTAGGGCAAAAATAAAAGAATATATGTCTTATTCTCGCTCGTGTCCCTACTTTACCTCCTTCTAA

Coding sequence (CDS)

ATGGTGAAGCTGACAATGGTGGGAAGGGTTAGGGATGGAGTGCCACTTGCACAAGGCATTAGGTATGTCAATGAAGAGAATGACGATGTTTTGGGGTACAAACAGCAAGCTGAGTTCATACTCAAACAGATCTCTAGAGGGGCTTTGTCACCTCCAAAAATGGTCATTCAAATGCATCATCACTCTTTCATGTACCGTTCTAACTCTCTTTTCTTTACTTACTTGATCGAGAACGGAGTGTGTTACATGACGTTATGCGATTCTTTATACCCAAGAAAGCTGGCTATCCATTACTTGCAAGATCTGCAAAGGGAGTTTTCCAAGTTTGATGATGCCCTACTAAACAGCCTTATCAAACCCTATAGTTTCCCCAAATTTGGTAACCTTTCTCAACCCTCTTCATCCATGCCTGCCCGACTTAGGGCAAAAATAAAAGAATATATGTCTTATTCTCGCTCGTGTCCCTACTTTACCTCCTTCTAA

Protein sequence

MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHHHSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKPYSFPKFGNLSQPSSSMPARLRAKIKEYMSYSRSCPYFTSF

Homology

[Close]

BLAST of Carg22098 vs. NCBI nr
Match: KAG7013230.1 (25.3 kDa vesicle transport protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.1 bits (832), Expect = 3.4e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH
Sbjct: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP
Sbjct: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120

Query: 121 YSFPKFGNLSQPSSSMPARLRAKIKEYMSYSRSCPYFTSF 161
           YSFPKFGNLSQPSSSMPARLRAKIKEYMSYSRSCPYFTSF
Sbjct: 121 YSFPKFGNLSQPSSSMPARLRAKIKEYMSYSRSCPYFTSF 160

[Close]

BLAST of Carg22098 vs. NCBI nr
Match: XP_022944814.1 (25.3 kDa vesicle transport protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 228.8 bits (582), Expect = 3.3e-56
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALSPPKMVIQMHH
Sbjct: 44  MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSPPKMVIQMHH 103

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 104 HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 163

Query: 121 YSFPKFGNL 130
           YSF KF N+
Sbjct: 164 YSFLKFDNI 163

[Close]

BLAST of Carg22098 vs. NCBI nr
Match: XP_022944815.1 (25.3 kDa vesicle transport protein isoform X2 [Cucurbita moschata])

HSP 1 Score: 228.8 bits (582), Expect = 3.3e-56
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALSPPKMVIQMHH
Sbjct: 44  MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSPPKMVIQMHH 103

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 104 HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 163

Query: 121 YSFPKFGNL 130
           YSF KF N+
Sbjct: 164 YSFLKFDNI 163

[Close]

BLAST of Carg22098 vs. NCBI nr
Match: XP_022968542.1 (25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 5.7e-56
Identity = 113/129 (87.60%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALS PKM IQMHH
Sbjct: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSSPKMAIQMHH 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 61  HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 120

Query: 121 YSFPKFGNL 130
           YSFPKF N+
Sbjct: 121 YSFPKFDNI 120

[Close]

BLAST of Carg22098 vs. NCBI nr
Match: XP_022968543.1 (25.3 kDa vesicle transport protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 5.7e-56
Identity = 113/129 (87.60%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALS PKM IQMHH
Sbjct: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSSPKMAIQMHH 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 61  HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 120

Query: 121 YSFPKFGNL 130
           YSFPKF N+
Sbjct: 121 YSFPKFDNI 120

[Close]

BLAST of Carg22098 vs. ExPASy Swiss-Prot
Match: Q94AU2 (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-19
Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVK+T++ RV DG+PLA+G+    +  D  + YKQQ + + K +SRG     +M ++   
Sbjct: 1   MVKMTLIARVTDGLPLAEGLDDGRDLPDSDM-YKQQVKALFKNLSRGQNDASRMSVE--- 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
                 +    F Y+IE  VCY+T+CD  YP+KLA  YL+DL+ EF + +   + +  +P
Sbjct: 61  ------TGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARP 120

Query: 121 YSFPKFGNLSQPSSSM 137
           Y+F KF    Q +  +
Sbjct: 121 YAFIKFDTFIQKTKKL 126

[Close]

BLAST of Carg22098 vs. ExPASy Swiss-Prot
Match: Q5ZJW4 (Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.2e-17
Identity = 47/143 (32.87%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MV LTM+ RV DG+PLA  ++   +   D+  Y+ QA+ + ++++    SP +  ++   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNE--QSPTRCTLE--- 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
                 + ++ F Y+IE GVCY+ LC++ +P+KLA  YL+DLQ EF +     + ++ +P
Sbjct: 61  ------AGAMAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRP 120

Query: 121 YSFPKFGNLSQPSSSMPARLRAK 144
           YSF +F    Q +  +    RA+
Sbjct: 121 YSFIEFDTYIQKTKKLYIDSRAR 132

[Close]

BLAST of Carg22098 vs. ExPASy Swiss-Prot
Match: Q6P7L4 (Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis OX=8364 GN=sec22b PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 48/143 (33.57%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MV LTM+ RV DG+PLA  ++   +   D+  Y+ QA+ + ++++    SP +  ++   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQNQAKQLFRKLNE--QSPTRCTLE--- 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
                 + ++ F YLIE GVCY+ LC++ +P+KLA  YL+DL  EF +     + ++ +P
Sbjct: 61  ------AGAMTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRP 120

Query: 121 YSFPKFGNLSQPSSSMPARLRAK 144
           YSF +F N  Q +       RA+
Sbjct: 121 YSFIEFDNYIQKTKKSYIDSRAR 132

[Close]

BLAST of Carg22098 vs. ExPASy Swiss-Prot
Match: O08547 (Vesicle-trafficking protein SEC22b OS=Mus musculus OX=10090 GN=Sec22b PE=1 SV=3)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 46/143 (32.17%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MV LTM+ RV DG+PLA  ++   +   D+  Y+ QA+ + ++++    SP +  ++   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNE--QSPTRCTLE--- 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
                 + ++ F Y+IE GVCY+ LC++ +P+KLA  YL+DL  EF +     + ++ +P
Sbjct: 61  ------AGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRP 120

Query: 121 YSFPKFGNLSQPSSSMPARLRAK 144
           YSF +F    Q +  +    RA+
Sbjct: 121 YSFIEFDTFIQKTKKLYIDSRAR 132

[Close]

BLAST of Carg22098 vs. ExPASy Swiss-Prot
Match: Q5RAI9 (Vesicle-trafficking protein SEC22b OS=Pongo abelii OX=9601 GN=SEC22B PE=2 SV=3)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 46/143 (32.17%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MV LTM+ RV DG+PLA  ++   +   D+  Y+ QA+ + ++++    SP +  ++   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNE--QSPTRCTLE--- 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
                 + ++ F Y+IE GVCY+ LC++ +P+KLA  YL+DL  EF +     + ++ +P
Sbjct: 61  ------AGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRP 120

Query: 121 YSFPKFGNLSQPSSSMPARLRAK 144
           YSF +F    Q +  +    RA+
Sbjct: 121 YSFIEFDTFIQKTKKLYIDSRAR 132

[Close]

BLAST of Carg22098 vs. ExPASy TrEMBL
Match: A0A6J1FZ49 (25.3 kDa vesicle transport protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449240 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALSPPKMVIQMHH
Sbjct: 44  MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSPPKMVIQMHH 103

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 104 HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 163

Query: 121 YSFPKFGNL 130
           YSF KF N+
Sbjct: 164 YSFLKFDNI 163

[Close]

BLAST of Carg22098 vs. ExPASy TrEMBL
Match: A0A6J1FZ74 (25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449240 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALSPPKMVIQMHH
Sbjct: 44  MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSPPKMVIQMHH 103

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 104 HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 163

Query: 121 YSFPKFGNL 130
           YSF KF N+
Sbjct: 164 YSFLKFDNI 163

[Close]

BLAST of Carg22098 vs. ExPASy TrEMBL
Match: A0A6J1HTS6 (25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467744 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.7e-56
Identity = 113/129 (87.60%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALS PKM IQMHH
Sbjct: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSSPKMAIQMHH 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 61  HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 120

Query: 121 YSFPKFGNL 130
           YSFPKF N+
Sbjct: 121 YSFPKFDNI 120

[Close]

BLAST of Carg22098 vs. ExPASy TrEMBL
Match: A0A6J1HYB5 (25.3 kDa vesicle transport protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467744 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.7e-56
Identity = 113/129 (87.60%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILK+ISRGALS PKM IQMHH
Sbjct: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSSPKMAIQMHH 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSL+KP
Sbjct: 61  HSFI---------YLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKP 120

Query: 121 YSFPKFGNL 130
           YSFPKF N+
Sbjct: 121 YSFPKFDNI 120

[Close]

BLAST of Carg22098 vs. ExPASy TrEMBL
Match: A0A0A0LBE2 (Longin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.9e-51
Identity = 102/129 (79.07%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVKLTMVGRVRDG+P+AQGIRYVNEENDDV GYK+QAEFILK+ISRG LSPPKMVI MHH
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
           HSF+         YL+ENGVCYMTLCDS YPRKLAIHYLQDLQ+EF KFDDAL+N LIKP
Sbjct: 61  HSFI---------YLVENGVCYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKP 120

Query: 121 YSFPKFGNL 130
           YSF KF ++
Sbjct: 121 YSFLKFDSI 120

[Close]

BLAST of Carg22098 vs. TAIR 10
Match: AT5G52270.1 (SNARE-like superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVN-EENDDVLGYKQQAEFILKQISRGALSPPKMVIQMH 60
           MVKLT+VGRV DG+PLAQ   YVN E+N   L YKQQAEF+LKQ+S+ +L  PKM I + 
Sbjct: 1   MVKLTIVGRVEDGLPLAQDQTYVNQEDNTSFLLYKQQAEFLLKQVSKDSLLHPKMTILLD 60

Query: 61  HHSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDD-ALLNSLI 120
           HHS         F +L+E  +CY+ L DS YPRKL  +YLQ+L +E  K D+ AL+  + 
Sbjct: 61  HHS---------FHFLVEKKICYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKIS 120

Query: 121 KPYSFPKFGNL 130
           KPYSF +FG +
Sbjct: 121 KPYSFIRFGKI 122

[Close]

BLAST of Carg22098 vs. TAIR 10
Match: AT1G11890.1 (Synaptobrevin family protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-20
Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 1   MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKQISRGALSPPKMVIQMHH 60
           MVK+T++ RV DG+PLA+G+    +  D  + YKQQ + + K +SRG     +M ++   
Sbjct: 1   MVKMTLIARVTDGLPLAEGLDDGRDLPDSDM-YKQQVKALFKNLSRGQNDASRMSVE--- 60

Query: 61  HSFMYRSNSLFFTYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLIKP 120
                 +    F Y+IE  VCY+T+CD  YP+KLA  YL+DL+ EF + +   + +  +P
Sbjct: 61  ------TGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARP 120

Query: 121 YSFPKFGNLSQPSSSM 137
           Y+F KF    Q +  +
Sbjct: 121 YAFIKFDTFIQKTKKL 126

The following BLAST results are available for this feature:

BLAST of Carg22098 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013230.1	3.4e-85	100.00	25.3 kDa vesicle transport protein, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022944814.1	3.3e-56	88.37	25.3 kDa vesicle transport protein isoform X1 [Cucurbita moschata]	[more]
XP_022944815.1	3.3e-56	88.37	25.3 kDa vesicle transport protein isoform X2 [Cucurbita moschata]	[more]
XP_022968542.1	5.7e-56	87.60	25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima]	[more]
XP_022968543.1	5.7e-56	87.60	25.3 kDa vesicle transport protein isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg22098 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU2	2.6e-19	36.03	25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2...	[more]
Q5ZJW4	9.2e-17	32.87	Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1	[more]
Q6P7L4	2.0e-16	33.57	Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis OX=8364 GN=sec22b PE=2 ...	[more]
O08547	2.7e-16	32.17	Vesicle-trafficking protein SEC22b OS=Mus musculus OX=10090 GN=Sec22b PE=1 SV=3	[more]
Q5RAI9	2.7e-16	32.17	Vesicle-trafficking protein SEC22b OS=Pongo abelii OX=9601 GN=SEC22B PE=2 SV=3	[more]

BLAST of Carg22098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ49	1.6e-56	88.37	25.3 kDa vesicle transport protein isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FZ74	1.6e-56	88.37	25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HTS6	2.7e-56	87.60	25.3 kDa vesicle transport protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1HYB5	2.7e-56	87.60	25.3 kDa vesicle transport protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0LBE2	5.9e-51	79.07	Longin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3...	[more]

BLAST of Carg22098 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52270.1	1.5e-30	52.67	SNARE-like superfamily protein	[more]
AT1G11890.1	1.8e-20	36.03	Synaptobrevin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010908	Longin domain	SMART	SM01270	Longin_2	coord: 36..129 e-value: 5.2E-17 score: 72.5
IPR010908	Longin domain	PFAM	PF13774	Longin	coord: 40..127 e-value: 3.4E-15 score: 55.8
IPR010908	Longin domain	PROSITE	PS50859	LONGIN	coord: 6..108 score: 20.069101
IPR010908	Longin domain	CDD	cd14824	Longin	coord: 5..127 e-value: 2.69888E-17 score: 71.1329
None	No IPR available	GENE3D	3.30.450.50	Longin domain	coord: 1..132 e-value: 1.9E-30 score: 107.4
None	No IPR available	PANTHER	PTHR45837:SF7	SNARE-LIKE SUPERFAMILY PROTEIN	coord: 1..128
IPR044565	Vesicle-trafficking protein Sec22	PANTHER	PTHR45837	VESICLE-TRAFFICKING PROTEIN SEC22B	coord: 1..128
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22098-RA	Carg22098-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
biological_process	GO:0048280	vesicle fusion with Golgi apparatus
cellular_component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0012507	ER to Golgi transport vesicle membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031201	SNARE complex
molecular_function	GO:0005484	SNAP receptor activity