Carg22075 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22075
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 6228453 .. 6228878 (+)
RNA-Seq ExpressionCarg22075
SyntenyCarg22075
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGTGGCGATGAGCTTGAAAATGAAGACGCCGATTTAGGGTTTTTACAGACAGGAACCGGAGGTATATAAAGCGCAGAAGCAACGAAATCCATTTTCCATTCTTCAGTGCAGTTTCAGCTGCCCTCCAAATCGGAACCCTCTGATACCAATCTCGGTCTTGTTCTCCGCCGTCGGATCGCGGACTCCGACCGTCTATCCCTTCTTTAGCCTTCCCTCTCCTCCACTATCATTTCGCCTTCGCAACAAACCCCAAAAACAAACTCTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTAGGTATTTTACCCCCACAAAAATTCTTACAAAAACATTGTTCTTCTTCTTCTTCTTACAAAATCAATTTCTTTTTTCTTGTCGTGTAGGATTATCCCACCTCCGTTCTTACATTTTTTCCTTTAA

mRNA sequence

ATGTACGGTGGCGATGAGCTTGAAAATGAAGACGCCGATTTAGGACAGGAACCGGAGGTATATAAAGCGCAGAAGCAACGAAATCCATTTTCCATTCTTCAGTGCAGTTTCAGCTGCCCTCCAAATCGGAACCCTCTGATACCAATCTCGGTCTTGTTCTCCGCCGTCGGATCGCGGACTCCGACCGTCTATCCCTTCTTTAGCCTTCCCTCTCCTCCACTATCATTTCGCCTTCGCAACAAACCCCAAAAACAAACTCTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTAGGATTATCCCACCTCCGTTCTTACATTTTTTCCTTTAA

Coding sequence (CDS)

ATGTACGGTGGCGATGAGCTTGAAAATGAAGACGCCGATTTAGGACAGGAACCGGAGGTATATAAAGCGCAGAAGCAACGAAATCCATTTTCCATTCTTCAGTGCAGTTTCAGCTGCCCTCCAAATCGGAACCCTCTGATACCAATCTCGGTCTTGTTCTCCGCCGTCGGATCGCGGACTCCGACCGTCTATCCCTTCTTTAGCCTTCCCTCTCCTCCACTATCATTTCGCCTTCGCAACAAACCCCAAAAACAAACTCTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTAGGATTATCCCACCTCCGTTCTTACATTTTTTCCTTTAA

Protein sequence

MYGGDELENEDADLGQEPEVYKAQKQRNPFSILQCSFSCPPNRNPLIPISVLFSAVGSRTPTVYPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVVVRIIPPPFLHFFL
Homology
[Close]
BLAST of Carg22075 vs. NCBI nr
Match: KAG7011646.1 (hypothetical protein SDJN02_26552, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MYGGDELENEDADLGQEPEVYKAQKQRNPFSILQCSFSCPPNRNPLIPISVLFSAVGSRT 60
           MYGGDELENEDADLGQEPEVYKAQKQRNPFSILQCSFSCPPNRNPLIPISVLFSAVGSRT
Sbjct: 1   MYGGDELENEDADLGQEPEVYKAQKQRNPFSILQCSFSCPPNRNPLIPISVLFSAVGSRT 60

Query: 61  PTVYPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVVVRIIPPPFLHFFL 110
           PTVYPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVVVRIIPPPFLHFFL
Sbjct: 61  PTVYPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVVVRIIPPPFLHFFL 109

[Close]
BLAST of Carg22075 vs. NCBI nr
Match: KAG6571966.1 (hypothetical protein SDJN03_28694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.4 bits (407), Expect = 4.4e-36
Identity = 87/109 (79.82%), Postives = 88/109 (80.73%), Query Frame = 0 

Query: 1   MYGGDELENEDADLGQEPEVYKAQKQRNPFSILQCSFSCPPNRNPLIPISVLFSAVGSRT 60
           MYGGDELENEDADLG                     FSCPPNRNPLIPISVLFSAVGSRT
Sbjct: 1   MYGGDELENEDADLG---------------------FSCPPNRNPLIPISVLFSAVGSRT 60

Query: 61  PTVYPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVVVRIIPPPFLHFFL 110
           PT+YPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVVVRIIPPPFLHFFL
Sbjct: 61  PTIYPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVVVRIIPPPFLHFFL 88

The following BLAST results are available for this feature:
BLAST of Carg22075 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011646.11.2e-52100.00hypothetical protein SDJN02_26552, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6571966.14.4e-3679.82hypothetical protein SDJN03_28694, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg22075 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22075 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22075 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22075-RACarg22075-RAmRNA