Carg22022 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22022
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr04: 402008 .. 402760 (+)
RNA-Seq ExpressionCarg22022
SyntenyCarg22022
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAAGAAGCCCTCCAATGCTTGGCTCACCTGCGACGAATCTCCCGCTTTCCCTCCCCTTTCACCTGCAATAAGCTTGTTCACTCTCTCATCAACTCCGGCTGCGGCGAGCTCTCCGCCAAAGTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATTCATCGTCTTTCAATTCCATCATCTCCTTTTTCTGTAAATTAGGAAACATAAAATATGCCGAACGGATTTTGAATTCAATGCCCAGATTTGGGTGCTCGCCTGATATTGTGTCATACAATTCTTTGTTACATGGGTATTGTGCGAGTTATAAGATTAGAGAGGCTTGTTTTCTTGTTAATAGACTTCGTCGGGGTGTGTTGAATCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAGGTTTATATGAAGAATGAGGCGTTTATGTATCTGGGTTTGATGTGGAAATCCTGTTTGCCTAATGTTGTTACTTATGGTACACTTGTTGATATGATCTGTAAGATGGGGGATATGGAAGTGGGTAACAAAATGTTTTTTGATATGATGAAGGTGGGCGTTGTGCCTAATTTGGTTGCTTTTAGCTCCTTGATTGATGGGTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGGATACTTAGAGAGAATGCAACAATGTTCGGTTCAGCCGAACGAGTTCACATATTCAACGTTGATTGATGGTTGTTGCAAGCAGGGCGGATGTTGGGAAAGAGTCTGA

mRNA sequence

ATGGTCAAAGAAGCCCTCCAATGCTTGGCTCACCTGCGACGAATCTCCCGCTTTCCCTCCCCTTTCACCTGCAATAAGCTTGTTCACTCTCTCATCAACTCCGGCTGCGGCGAGCTCTCCGCCAAAGTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATTCATCGTCTTTCAATTCCATCATCTCCTTTTTCTGTAAATTAGGAAACATAAAATATGCCGAACGGATTTTGAATTCAATGCCCAGATTTGGGTGCTCGCCTGATATTGTGTCATACAATTCTTTGTTACATGGGTATTGTGCGAGTTATAAGATTAGAGAGGCTTGTTTTCTTGTTAATAGACTTCGTCGGGGTGTGTTGAATCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAGGTTTATATGAAGAATGAGGCGTTTATGTATCTGGGTTTGATGTGGAAATCCTGTTTGCCTAATGTTGTTACTTATGGTACACTTGTTGATATGATCTGTAAGATGGGGGATATGGAAGTGGGTAACAAAATGTTTTTTGATATGATGAAGGTGGGCGTTGTGCCTAATTTGGTTGCTTTTAGCTCCTTGATTGATGGGTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGGATACTTAGAGAGAATGCAACAATGTTCGGTTCAGCCGAACGAGTTCACATATTCAACGTTGATTGATGGTTGTTGCAAGCAGGGCGGATGTTGGGAAAGAGTCTGA

Coding sequence (CDS)

ATGGTCAAAGAAGCCCTCCAATGCTTGGCTCACCTGCGACGAATCTCCCGCTTTCCCTCCCCTTTCACCTGCAATAAGCTTGTTCACTCTCTCATCAACTCCGGCTGCGGCGAGCTCTCCGCCAAAGTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATTCATCGTCTTTCAATTCCATCATCTCCTTTTTCTGTAAATTAGGAAACATAAAATATGCCGAACGGATTTTGAATTCAATGCCCAGATTTGGGTGCTCGCCTGATATTGTGTCATACAATTCTTTGTTACATGGGTATTGTGCGAGTTATAAGATTAGAGAGGCTTGTTTTCTTGTTAATAGACTTCGTCGGGGTGTGTTGAATCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAGGTTTATATGAAGAATGAGGCGTTTATGTATCTGGGTTTGATGTGGAAATCCTGTTTGCCTAATGTTGTTACTTATGGTACACTTGTTGATATGATCTGTAAGATGGGGGATATGGAAGTGGGTAACAAAATGTTTTTTGATATGATGAAGGTGGGCGTTGTGCCTAATTTGGTTGCTTTTAGCTCCTTGATTGATGGGTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGGATACTTAGAGAGAATGCAACAATGTTCGGTTCAGCCGAACGAGTTCACATATTCAACGTTGATTGATGGTTGTTGCAAGCAGGGCGGATGTTGGGAAAGAGTCTGA

Protein sequence

MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQGGCWERV
Homology
[Close]
BLAST of Carg22022 vs. NCBI nr
Match: KAG7030598.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 523.5 bits (1347), Expect = 1.0e-144
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN
Sbjct: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG
Sbjct: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
           VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN
Sbjct: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
           KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC
Sbjct: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240

Query: 241 CKQGGCWERV 251
           CKQGGCWERV
Sbjct: 241 CKQGGCWERV 250

[Close]
BLAST of Carg22022 vs. NCBI nr
Match: KAG6599919.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 507.7 bits (1306), Expect = 5.8e-140
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN
Sbjct: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG
Sbjct: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
           VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN
Sbjct: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
           KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC
Sbjct: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240

Query: 241 CKQG 245
           CKQG
Sbjct: 241 CKQG 244

[Close]
BLAST of Carg22022 vs. NCBI nr
Match: XP_022943027.1 (pentatricopeptide repeat-containing protein At2g01740 [Cucurbita moschata] >XP_022943028.1 pentatricopeptide repeat-containing protein At2g01740 [Cucurbita moschata])

HSP 1 Score: 504.6 bits (1298), Expect = 4.9e-139
Identity = 242/244 (99.18%), Postives = 242/244 (99.18%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN
Sbjct: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIRE CFLVNRLRRG
Sbjct: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREVCFLVNRLRRG 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
           VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGN
Sbjct: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMFCKMGDMEVGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
           KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC
Sbjct: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240

Query: 241 CKQG 245
           CKQG
Sbjct: 241 CKQG 244

[Close]
BLAST of Carg22022 vs. NCBI nr
Match: XP_022995400.1 (pentatricopeptide repeat-containing protein At2g01740 [Cucurbita maxima] >XP_022995410.1 pentatricopeptide repeat-containing protein At2g01740 [Cucurbita maxima])

HSP 1 Score: 495.0 bits (1273), Expect = 3.9e-136
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQ LAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNR+R G
Sbjct: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRVRGG 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
           +LNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGN
Sbjct: 121 LLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMFCKMGDMEVGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
           KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSL+VAFGYLERMQQCSVQPNEFTYSTLIDGC
Sbjct: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLNVAFGYLERMQQCSVQPNEFTYSTLIDGC 240

Query: 241 CKQG 245
           CKQG
Sbjct: 241 CKQG 244

[Close]
BLAST of Carg22022 vs. NCBI nr
Match: XP_023537260.1 (pentatricopeptide repeat-containing protein At2g01740 [Cucurbita pepo subsp. pepo] >XP_023537269.1 pentatricopeptide repeat-containing protein At2g01740 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.7 bits (1267), Expect = 1.9e-135
Identity = 237/244 (97.13%), Postives = 239/244 (97.95%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQ LAHLRRIS FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPH+SSFN
Sbjct: 1   MVKEALQFLAHLRRISGFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHASSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNR+R G
Sbjct: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRVRGG 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
           VLNPDLVMFNILFNGFAK YMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGN
Sbjct: 121 VLNPDLVMFNILFNGFAKAYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMFCKMGDMEVGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
           KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC
Sbjct: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240

Query: 241 CKQG 245
           CKQG
Sbjct: 241 CKQG 244

[Close]
BLAST of Carg22022 vs. ExPASy Swiss-Prot
Match: Q9ZUA2 (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX=3702 GN=At2g01740 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 7.5e-74
Identity = 130/247 (52.63%), Postives = 174/247 (70.45%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MV+EALQ L+ LR+ S  P PFTCNK +H LINS CG LS K L + +S+GYTPH SSFN
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           S++SF CKLG +K+AE I++SMPRFGC PD++SYNSL+ G+C +  IR A  ++  LR  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 ---VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDME 180
              +  PD+V FN LFNGF+K+ M +E F+Y+G+M K C PNVVTY T +D  CK G+++
Sbjct: 121 HGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

Query: 181 VGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLI 240
           +  K F  M +  + PN+V F+ LIDGYCKAG L+VA    + M++  +  N  TY+ LI
Sbjct: 181 LALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI 240

Query: 241 DGCCKQG 245
           DG CK+G
Sbjct: 241 DGFCKKG 247

[Close]
BLAST of Carg22022 vs. ExPASy Swiss-Prot
Match: P0C894 (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-33
Identity = 80/242 (33.06%), Postives = 122/242 (50.41%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           M++EA+QC + ++R   FP   +CN L+H     G  +   +     +  G  P   ++N
Sbjct: 207 MLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYN 266

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
            +I   CK G+++ A  +   M   G  PD V+YNS++ G+    ++ +       ++  
Sbjct: 267 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 326

Query: 121 VLNPDLVMFNILFNGFAKV-YMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVG 180
              PD++ +N L N F K   +      Y  +      PNVV+Y TLVD  CK G M+  
Sbjct: 327 CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQA 386

Query: 181 NKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDG 240
            K + DM +VG+VPN   ++SLID  CK G+L  AF     M Q  V+ N  TY+ LIDG
Sbjct: 387 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 446

Query: 241 CC 242
            C
Sbjct: 447 LC 448

[Close]
BLAST of Carg22022 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-31
Identity = 75/226 (33.19%), Postives = 116/226 (51.33%), Query Frame = 0 

Query: 18  FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAER 77
           FP  +T N LV+ L  +G  + + +++   L +GY P   ++NS+IS  CKLG +K A  
Sbjct: 292 FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVE 351

Query: 78  ILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFA 137
           +L+ M    CSP+ V+YN+L+   C   ++ EA  L   L    + PD+  FN L  G  
Sbjct: 352 VLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 411

Query: 138 KVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLV 197
                  A  ++  +  K C P+  TY  L+D +C  G ++    M   M   G   +++
Sbjct: 412 LTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI 471

Query: 198 AFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCK 243
            +++LIDG+CKA     A    + M+   V  N  TY+TLIDG CK
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

[Close]
BLAST of Carg22022 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 71/244 (29.10%), Postives = 130/244 (53.28%), Query Frame = 0 

Query: 2   VKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNS 61
           V +AL     +      P+  T N L+  L N G    ++++L   + +   P+  +F++
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330

Query: 62  IISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRGV 121
           +I  F K G +  AE++ + M +    PDI +Y+SL++G+C   ++ EA  +   +    
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 122 LNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 181
             P++V +N L  GF K     E   ++  +  +  + N VTY TL+  + + GD ++  
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 182 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 241
           K+F  M+  GV P+++ +S L+DG CK G L+ A    E +Q+  ++P+ +TY+ +I+G 
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510

Query: 242 CKQG 245
           CK G
Sbjct: 511 CKAG 514

[Close]
BLAST of Carg22022 vs. ExPASy Swiss-Prot
Match: Q9FMD3 (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16640 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-30
Identity = 91/280 (32.50%), Postives = 132/280 (47.14%), Query Frame = 0 

Query: 5   ALQCLAHLRRISRFPSPFTCNKLVHSLINSGC-GELSAKVLFHF---LSKGYTPHSSSFN 64
           AL  L  + ++   PS  T      SL+N  C G+     L+ F   +  GY P+   +N
Sbjct: 135 ALSFLGKMIKLGHEPSIVTFG----SLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYN 194

Query: 65  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVN----- 124
           +II   CK   +  A  +LN M + G  PD+V+YNSL+ G C+S +  +A  +V+     
Sbjct: 195 TIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKR 254

Query: 125 ------------------------------RLRRGVLNPDLVMFNILFNGFAKVYMKNEA 184
                                          + R  L+PD+V +++L  G       +EA
Sbjct: 255 EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 314

Query: 185 FMYLGLM-WKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDG 244
               G M  K C P+VVTY  L++  CK   +E G K+F +M + GVV N V ++ LI G
Sbjct: 315 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQG 374

[Close]
BLAST of Carg22022 vs. ExPASy TrEMBL
Match: A0A6J1FRV7 (pentatricopeptide repeat-containing protein At2g01740 OS=Cucurbita moschata OX=3662 GN=LOC111447887 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.4e-139
Identity = 242/244 (99.18%), Postives = 242/244 (99.18%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN
Sbjct: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIRE CFLVNRLRRG
Sbjct: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREVCFLVNRLRRG 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
           VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGN
Sbjct: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMFCKMGDMEVGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
           KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC
Sbjct: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240

Query: 241 CKQG 245
           CKQG
Sbjct: 241 CKQG 244

[Close]
BLAST of Carg22022 vs. ExPASy TrEMBL
Match: A0A6J1K3Y4 (pentatricopeptide repeat-containing protein At2g01740 OS=Cucurbita maxima OX=3661 GN=LOC111490957 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.9e-136
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQ LAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNR+R G
Sbjct: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRVRGG 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
           +LNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGN
Sbjct: 121 LLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMFCKMGDMEVGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
           KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSL+VAFGYLERMQQCSVQPNEFTYSTLIDGC
Sbjct: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLNVAFGYLERMQQCSVQPNEFTYSTLIDGC 240

Query: 241 CKQG 245
           CKQG
Sbjct: 241 CKQG 244

[Close]
BLAST of Carg22022 vs. ExPASy TrEMBL
Match: A0A6J1D0T3 (pentatricopeptide repeat-containing protein At2g01740 OS=Momordica charantia OX=3673 GN=LOC111015970 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.9e-118
Identity = 200/244 (81.97%), Postives = 227/244 (93.03%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVK+ALQ LA+LRRISRFPSPFTCNKL+HSL+NSGCGELSAK+LFHFLSKGY+PH SSFN
Sbjct: 1   MVKDALQFLAYLRRISRFPSPFTCNKLLHSLVNSGCGELSAKLLFHFLSKGYSPHPSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFC+LG +++A++IL+SMPRFGCSPDIVSYNSLL G+C +Y+IR+ACFLVNR+R  
Sbjct: 61  SIISFFCRLGRVEFAQQILHSMPRFGCSPDIVSYNSLLXGFCVNYQIRKACFLVNRVRGS 120

Query: 121 VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 180
            L+PDLVMFNILFNGFAKVYMK EAFMYLGLMWK CLPNVVTYGT +DM CKMGDME+GN
Sbjct: 121 ELSPDLVMFNILFNGFAKVYMKREAFMYLGLMWKFCLPNVVTYGTFIDMFCKMGDMEMGN 180

Query: 181 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 240
            MF DM+KVGVVPN VAFSSLIDGYCKAGSLD+AF Y E+M++CSVQPNEFTY+TLIDGC
Sbjct: 181 GMFLDMVKVGVVPNFVAFSSLIDGYCKAGSLDIAFQYFEKMEECSVQPNEFTYATLIDGC 240

Query: 241 CKQG 245
           CKQG
Sbjct: 241 CKQG 244

[Close]
BLAST of Carg22022 vs. ExPASy TrEMBL
Match: A0A5A7UTD7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00420 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.9e-112
Identity = 199/245 (81.22%), Postives = 220/245 (89.80%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQ LAHLRRISRFPSPFTCNKL+HSLINSGCG LSAK+L H LSKGYTPH SSFN
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKLLIHLLSKGYTPHPSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFC+ GN+K+AE+I  SM RFGCSPDIVSYNSLL GYC+S +I++ACFLVNR+R  
Sbjct: 61  SIISFFCRSGNVKFAEQIFISMSRFGCSPDIVSYNSLLDGYCSSCQIQKACFLVNRVRGC 120

Query: 121 VLN-PDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVG 180
            LN PDLVMFNILF GFAKVYMKNEAFMYLGLMWK  LP++VTYGT VDM CKMGDME+G
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDG 240
           N+MF DMMKVG+VPNL+ FSSLIDGYCKAGSLDVAF Y ERM++CSV+PNEFTYSTLIDG
Sbjct: 181 NRMFLDMMKVGIVPNLIVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDG 240

Query: 241 CCKQG 245
           C K+G
Sbjct: 241 CSKRG 245

[Close]
BLAST of Carg22022 vs. ExPASy TrEMBL
Match: A0A1S3BTQ4 (pentatricopeptide repeat-containing protein At2g01740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493450 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.9e-112
Identity = 199/245 (81.22%), Postives = 220/245 (89.80%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MVKEALQ LAHLRRISRFPSPFTCNKL+HSLINSGCG LSAK+L H LSKGYTPH SSFN
Sbjct: 1   MVKEALQFLAHLRRISRFPSPFTCNKLLHSLINSGCGHLSAKLLIHLLSKGYTPHPSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           SIISFFC+ GN+K+AE+I  SM RFGCSPDIVSYNSLL GYC+S +I++ACFLVNR+R  
Sbjct: 61  SIISFFCRSGNVKFAEQIFISMSRFGCSPDIVSYNSLLDGYCSSCQIQKACFLVNRVRGC 120

Query: 121 VLN-PDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVG 180
            LN PDLVMFNILF GFAKVYMKNEAFMYLGLMWK  LP++VTYGT VDM CKMGDME+G
Sbjct: 121 ELNRPDLVMFNILFKGFAKVYMKNEAFMYLGLMWKYYLPSIVTYGTFVDMFCKMGDMEMG 180

Query: 181 NKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDG 240
           N+MF DMMKVG+VPNL+ FSSLIDGYCKAGSLDVAF Y ERM++CSV+PNEFTYSTLIDG
Sbjct: 181 NRMFLDMMKVGIVPNLIVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDG 240

Query: 241 CCKQG 245
           C K+G
Sbjct: 241 CSKRG 245

[Close]
BLAST of Carg22022 vs. TAIR 10
Match: AT2G01740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 278.5 bits (711), Expect = 5.3e-75
Identity = 130/247 (52.63%), Postives = 174/247 (70.45%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           MV+EALQ L+ LR+ S  P PFTCNK +H LINS CG LS K L + +S+GYTPH SSFN
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
           S++SF CKLG +K+AE I++SMPRFGC PD++SYNSL+ G+C +  IR A  ++  LR  
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 121 ---VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDME 180
              +  PD+V FN LFNGF+K+ M +E F+Y+G+M K C PNVVTY T +D  CK G+++
Sbjct: 121 HGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

Query: 181 VGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLI 240
           +  K F  M +  + PN+V F+ LIDGYCKAG L+VA    + M++  +  N  TY+ LI
Sbjct: 181 LALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI 240

Query: 241 DGCCKQG 245
           DG CK+G
Sbjct: 241 DGFCKKG 247

[Close]
BLAST of Carg22022 vs. TAIR 10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-34
Identity = 80/242 (33.06%), Postives = 122/242 (50.41%), Query Frame = 0 

Query: 1   MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFN 60
           M++EA+QC + ++R   FP   +CN L+H     G  +   +     +  G  P   ++N
Sbjct: 207 MLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYN 266

Query: 61  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRG 120
            +I   CK G+++ A  +   M   G  PD V+YNS++ G+    ++ +       ++  
Sbjct: 267 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 326

Query: 121 VLNPDLVMFNILFNGFAKV-YMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVG 180
              PD++ +N L N F K   +      Y  +      PNVV+Y TLVD  CK G M+  
Sbjct: 327 CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQA 386

Query: 181 NKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDG 240
            K + DM +VG+VPN   ++SLID  CK G+L  AF     M Q  V+ N  TY+ LIDG
Sbjct: 387 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 446

Query: 241 CC 242
            C
Sbjct: 447 LC 448

[Close]
BLAST of Carg22022 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-32
Identity = 75/226 (33.19%), Postives = 116/226 (51.33%), Query Frame = 0 

Query: 18  FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAER 77
           FP  +T N LV+ L  +G  + + +++   L +GY P   ++NS+IS  CKLG +K A  
Sbjct: 292 FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVE 351

Query: 78  ILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFA 137
           +L+ M    CSP+ V+YN+L+   C   ++ EA  L   L    + PD+  FN L  G  
Sbjct: 352 VLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 411

Query: 138 KVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLV 197
                  A  ++  +  K C P+  TY  L+D +C  G ++    M   M   G   +++
Sbjct: 412 LTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI 471

Query: 198 AFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCK 243
            +++LIDG+CKA     A    + M+   V  N  TY+TLIDG CK
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

[Close]
BLAST of Carg22022 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 9.5e-32
Identity = 71/244 (29.10%), Postives = 130/244 (53.28%), Query Frame = 0 

Query: 2   VKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNS 61
           V +AL     +      P+  T N L+  L N G    ++++L   + +   P+  +F++
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330

Query: 62  IISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRLRRGV 121
           +I  F K G +  AE++ + M +    PDI +Y+SL++G+C   ++ EA  +   +    
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 122 LNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGN 181
             P++V +N L  GF K     E   ++  +  +  + N VTY TL+  + + GD ++  
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 182 KMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGC 241
           K+F  M+  GV P+++ +S L+DG CK G L+ A    E +Q+  ++P+ +TY+ +I+G 
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510

Query: 242 CKQG 245
           CK G
Sbjct: 511 CKAG 514

[Close]
BLAST of Carg22022 vs. TAIR 10
Match: AT5G16640.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-31
Identity = 91/280 (32.50%), Postives = 132/280 (47.14%), Query Frame = 0 

Query: 5   ALQCLAHLRRISRFPSPFTCNKLVHSLINSGC-GELSAKVLFHF---LSKGYTPHSSSFN 64
           AL  L  + ++   PS  T      SL+N  C G+     L+ F   +  GY P+   +N
Sbjct: 135 ALSFLGKMIKLGHEPSIVTFG----SLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYN 194

Query: 65  SIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVN----- 124
           +II   CK   +  A  +LN M + G  PD+V+YNSL+ G C+S +  +A  +V+     
Sbjct: 195 TIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKR 254

Query: 125 ------------------------------RLRRGVLNPDLVMFNILFNGFAKVYMKNEA 184
                                          + R  L+PD+V +++L  G       +EA
Sbjct: 255 EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 314

Query: 185 FMYLGLM-WKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDG 244
               G M  K C P+VVTY  L++  CK   +E G K+F +M + GVV N V ++ LI G
Sbjct: 315 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQG 374

The following BLAST results are available for this feature:
BLAST of Carg22022 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030598.11.0e-144100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6599919.15.8e-140100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022943027.14.9e-13999.18pentatricopeptide repeat-containing protein At2g01740 [Cucurbita moschata] >XP_0... [more]
XP_022995400.13.9e-13697.54pentatricopeptide repeat-containing protein At2g01740 [Cucurbita maxima] >XP_022... [more]
XP_023537260.11.9e-13597.13pentatricopeptide repeat-containing protein At2g01740 [Cucurbita pepo subsp. pep... [more]
BLAST of Carg22022 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZUA27.5e-7452.63Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX... [more]
P0C8942.9e-3333.06Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th... [more]
Q9LFF13.5e-3133.19Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
Q9LQ141.3e-3029.10Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop... [more]
Q9FMD33.0e-3032.50Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidop... [more]
BLAST of Carg22022 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FRV72.4e-13999.18pentatricopeptide repeat-containing protein At2g01740 OS=Cucurbita moschata OX=3... [more]
A0A6J1K3Y41.9e-13697.54pentatricopeptide repeat-containing protein At2g01740 OS=Cucurbita maxima OX=366... [more]
A0A6J1D0T33.9e-11881.97pentatricopeptide repeat-containing protein At2g01740 OS=Momordica charantia OX=... [more]
A0A5A7UTD71.9e-11281.22Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BTQ41.9e-11281.22pentatricopeptide repeat-containing protein At2g01740 isoform X2 OS=Cucumis melo... [more]
BLAST of Carg22022 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01740.15.3e-7552.63Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G02150.12.0e-3433.06Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G53700.12.5e-3233.19Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62930.19.5e-3229.10Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G16640.12.1e-3132.50Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 154..186
e-value: 1.9E-6
score: 27.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 92..125
e-value: 0.0012
score: 16.8
coord: 196..230
e-value: 4.4E-8
score: 30.8
coord: 161..194
e-value: 1.9E-6
score: 25.7
coord: 58..91
e-value: 3.0E-8
score: 31.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 55..102
e-value: 7.6E-12
score: 45.3
coord: 193..242
e-value: 4.0E-16
score: 59.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 90..124
score: 9.689847
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 55..89
score: 11.081932
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 11.103854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 194..228
score: 11.564229
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 155..250
e-value: 2.1E-29
score: 104.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..154
e-value: 5.0E-29
score: 103.6
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 2..244
NoneNo IPR availablePANTHERPTHR45613:SF401REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 2..244

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22022-RACarg22022-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding