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Carg22002 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCACCGGGGAAACCATGAAGCTGAACACCCCGGTTCAAGCCGGAGATGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCCGTGAAGCACTACGGTGTCCGCGCAAAGCCGTTGGAACCCCACCAAAACCTCAGCAGGAAGCGCCTCTATTTTCTGGTGGACCTGCCTAAGCTTCCAAACCAACCGGTAATCAAATTACGAACTTAACTAATTAATTACTCTACGTTTAACCCTTTTATTCATATTCTTATTCTTATTCTTATTCTTAATACAGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAACCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACCACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCCAAAAGTGCGCCAAAACAGGAGAAGGAGGATGGCATCAAGCCACGTGAGGTGCGTATGCCTTTTACTTTTTCATCTTTTATTATTATTATTATTATTACTATTATTATTATTATTGCATTTTACTTTAATTAAATTTATAATTCACTTTTATTGATTTAAATGGATGACCCCAAGTTGACTCGCTCACTATCCAATGACTCAATATATTTAATTTCATTTGTTTTTTTTTTTTTTTTTTTCTTTTGCCAAAACCACATCAACATCTTATTATAAATATCCATAGAATATTATACCTTCAAATTTGTTTCTTTTTAGAAAATATCTTGACGAGTTCCTAAATTATATTTAAATTGACTATTTTTAATGATTATTAATTTTCAAAATAATAAAATTAGGTTGCCAAGTTGAGTCTCACTCTCAGATTAATCCCTTTTTATTTGGTTAGTGCTTGGTGTTCTAACCCATTATTTAGTGTAACTTATCTTTTCAGACTTTTCCATCCTATAATTATTGGAGTTTGAATTTTCATCTAATTTTATTTTTCAAAATTAATAATAATATCTTTTACAATTTGAAATTATTTAATGAAAATAAATAAATCTAAAAATAATTATCAACTATTCTCATTTAATTAGTGTTTTTGTCTTCAAAACCCATTAATTTATAATTTAACTTATTTTTTCAATAGTTAAAAAAAAAAAAAAACAAAAAAAATAGTTAGATATCAATCAAATTCATTAAATAGATAGTGCGGGGCCATTAACTGCTCGACTTTTTGTACAATTTTCTTCCATCGTATAATAGACGCAACCTTTTCTTTCCCCTAATTATTAATGTAGTTTTGTAAAATAGAAAACTACCATTAATGAAATTTAATATCATTTATTTGTTTATTTCTTCATTCTTTTCCCTCTTACTATTTATGACAAGGAATTTTTCTAATTTTTTTCAATGCAGAAGCGACGTGTAAGTTTCATGACGACAATGGAAGCAGGGACTGAAATTGCAGTAGCATCTTAATTATCGAGAAGAACAAGATTCATGAATAAGCATATTGAAGTAATACAGTAATGATCTACGGGAAGTGCTACGTTATGACTTTTACTTCAGTTTAAAAACATTTGAATCTTGTGAGAGCTTGCTTTTGTAGAATATACATAGAACTCACTATG ATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCACCGGGGAAACCATGAAGCTGAACACCCCGGTTCAAGCCGGAGATGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCCGTGAAGCACTACGGTGTCCGCGCAAAGCCGTTGGAACCCCACCAAAACCTCAGCAGGAAGCGCCTCTATTTTCTGGTGGACCTGCCTAAGCTTCCAAACCAACCGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAACCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACCACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCCAAAAGTGCGCCAAAACAGGAGAAGGAGGATGGCATCAAGCCACGTGAGAAGCGACGTGTAAGTTTCATGACGACAATGGAAGCAGGGACTGAAATTGCAGTAGCATCTTAATTATCGAGAAGAACAAGATTCATGAATAAGCATATTGAAGTAATACAGTAATGATCTACGGGAAGTGCTACGTTATGACTTTTACTTCAGTTTAAAAACATTTGAATCTTGTGAGAGCTTGCTTTTGTAGAATATACATAGAACTCACTATG ATGGGAAACGCGTTTGGAGGTAAGAAGACAGTGAAGGTGATGAAGGTCACCGGGGAAACCATGAAGCTGAACACCCCGGTTCAAGCCGGAGATGTTGTCAAAGATTATCCCGGCTTCGTTCTGCTGGATTCCGAGGCCGTGAAGCACTACGGTGTCCGCGCAAAGCCGTTGGAACCCCACCAAAACCTCAGCAGGAAGCGCCTCTATTTTCTGGTGGACCTGCCTAAGCTTCCAAACCAACCGCCACCACGCCGCATACGTTCCGCAATCCACATGAGCGCCAAGGACAGGCTAGAGAGTTTGATGCTGGCACGGCGCTCCGCATCAGACCTAACTATCATGAAACCAAAGAGTGTGTTGGCGGAGGAGGACGCCGGGGAGGGGTCATCGGGAGCGGGAACCACACGGCTGAAGGTGAGGCTGCCGAGGGCGGAGGTGGAGAAACTGTTGAAGGAAAGCAAAGATAAGGGAGAGGCGGCGGAGAAGATCGTGGGACTGTACGGACTTTACATGGATAAAACCACACAAAGTGCCTCCAAAAGTGCGCCAAAACAGGAGAAGGAGGATGGCATCAAGCCACGTGAGAAGCGACGTGTAAGTTTCATGACGACAATGGAAGCAGGGACTGAAATTGCAGTAGCATCTTAA MGNAFGGKKTVKVMKVTGETMKLNTPVQAGDVVKDYPGFVLLDSEAVKHYGVRAKPLEPHQNLSRKRLYFLVDLPKLPNQPPPRRIRSAIHMSAKDRLESLMLARRSASDLTIMKPKSVLAEEDAGEGSSGAGTTRLKVRLPRAEVEKLLKESKDKGEAAEKIVGLYGLYMDKTTQSASKSAPKQEKEDGIKPREKRRVSFMTTMEAGTEIAVAS Homology
BLAST of Carg22002 vs. NCBI nr
Match: XP_022941735.1 (uncharacterized protein At1g66480-like [Cucurbita moschata] >KAG7030578.1 hypothetical protein SDJN02_04615, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
BLAST of Carg22002 vs. NCBI nr
Match: KAG6599897.1 (hypothetical protein SDJN03_05130, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 409.5 bits (1051), Expect = 1.8e-110 Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 0
BLAST of Carg22002 vs. NCBI nr
Match: XP_023511768.1 (uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 407.1 bits (1045), Expect = 9.2e-110 Identity = 211/215 (98.14%), Postives = 214/215 (99.53%), Query Frame = 0
BLAST of Carg22002 vs. NCBI nr
Match: XP_022986741.1 (uncharacterized protein At1g66480-like [Cucurbita maxima] >XP_022986749.1 uncharacterized protein At1g66480-like [Cucurbita maxima]) HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104 Identity = 207/215 (96.28%), Postives = 211/215 (98.14%), Query Frame = 0
BLAST of Carg22002 vs. NCBI nr
Match: XP_008454773.1 (PREDICTED: uncharacterized protein At1g66480 isoform X2 [Cucumis melo]) HSP 1 Score: 306.2 bits (783), Expect = 2.2e-79 Identity = 167/217 (76.96%), Postives = 187/217 (86.18%), Query Frame = 0
BLAST of Carg22002 vs. ExPASy Swiss-Prot
Match: Q6NLC8 (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 4.4e-38 Identity = 105/231 (45.45%), Postives = 146/231 (63.20%), Query Frame = 0
BLAST of Carg22002 vs. ExPASy TrEMBL
Match: A0A6J1FUK8 (uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC111447013 PE=4 SV=1) HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
BLAST of Carg22002 vs. ExPASy TrEMBL
Match: A0A6J1JGY1 (uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC111484405 PE=4 SV=1) HSP 1 Score: 389.8 bits (1000), Expect = 7.3e-105 Identity = 207/215 (96.28%), Postives = 211/215 (98.14%), Query Frame = 0
BLAST of Carg22002 vs. ExPASy TrEMBL
Match: A0A1S3C0K8 (uncharacterized protein At1g66480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495093 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 1.1e-79 Identity = 167/217 (76.96%), Postives = 187/217 (86.18%), Query Frame = 0
BLAST of Carg22002 vs. ExPASy TrEMBL
Match: A0A1S3BZC7 (uncharacterized protein At1g66480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495093 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 2.6e-78 Identity = 167/218 (76.61%), Postives = 187/218 (85.78%), Query Frame = 0
BLAST of Carg22002 vs. ExPASy TrEMBL
Match: A0A6J1DRH0 (uncharacterized protein At1g66480 OS=Momordica charantia OX=3673 GN=LOC111022499 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 9.3e-76 Identity = 163/222 (73.42%), Postives = 183/222 (82.43%), Query Frame = 0
BLAST of Carg22002 vs. TAIR 10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection. ) HSP 1 Score: 191.8 bits (486), Expect = 5.6e-49 Identity = 118/227 (51.98%), Postives = 149/227 (65.64%), Query Frame = 0
BLAST of Carg22002 vs. TAIR 10
Match: AT1G71015.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 172.2 bits (435), Expect = 4.6e-43 Identity = 94/200 (47.00%), Postives = 135/200 (67.50%), Query Frame = 0
BLAST of Carg22002 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 ) HSP 1 Score: 159.5 bits (402), Expect = 3.1e-39 Identity = 105/231 (45.45%), Postives = 146/231 (63.20%), Query Frame = 0
BLAST of Carg22002 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 143.3 bits (360), Expect = 2.3e-34 Identity = 85/171 (49.71%), Postives = 111/171 (64.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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