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Carg21978 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTTTAGTAGTGTAGGCTCTCATACAGTTAGCAAGAACTTGATTACTGATGTGTAATTTGATCGAAGATGTCAACATTTTGACCATCTGAAAAACTTGAGTGAAACGATTGGTTCAGTCTACGACAAGGTATCATAAATCAATTGTTTGAGTTCTCAATTGCAACCTAAATTATGTATGTTGCAACTTGAAAAGAAAAGAATTCCTTGAGCTCCTGGCTATTTGGTATTCTAAATAATCTTTATGCGCTATGTTCAAGATTTCAGATGCAAGACATTGCTTAATGTTGTAATTTTTCTAGTTTATAAAGACCTAATACAATCATCTTCAGGAAAACGGTGATATTGCCATCGATGATGGAATCCATCGAGGAGTTCAATATCCCTTTGCAGTAAATGAAAAGGTCCTAATAAAGGTGAACAATTTTCTATCATATTCTGACTTTTTTCTTTTTAACTACTTGATGAAGTTCAGAATTTGAGAAGCGTTCTGGTATATCTTAGGGAAATAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACATCCCAGTGTCTGAATGGCTGGTTAGTACGCGTATTACAAAGTGATAGTTCATGTTCTTCTATAGGACTACATAGTTCGTTGTCTCATCAGACATTGTAGTTATAATTTTCTTCCTTAACCTTCAGGTATTTACTAAAAATCATTGGGACTGGAGAAAATGTTCGGTTGCAATATCGGTCTCTTAGGAAGATCCTGAACACGACACCAGCTAACGAGGATAGCTGTCCCTCACAGCCCCTTCAGCACAGCAGCTCATAG ATGCCTTTTAGTAGTGTAGGCTCTCATACAGAAAACGGTGATATTGCCATCGATGATGGAATCCATCGAGGAGTTCAATATCCCTTTGCAGTAAATGAAAAGGTCCTAATAAAGAATTTGAGAAGCGTTCTGGGAAATAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACATCCCAGTGTCTGAATGGCTGGTTAGTACGCGTATTACAAAGTGATAGTTCATGTTCTTCTATAGGACTACATAGTTCGTTGTCTCATCAGACATTGTATTTACTAAAAATCATTGGGACTGGAGAAAATGTTCGGTTGCAATATCGGTCTCTTAGGAAGATCCTGAACACGACACCAGCTAACGAGGATAGCTGTCCCTCACAGCCCCTTCAGCACAGCAGCTCATAG ATGCCTTTTAGTAGTGTAGGCTCTCATACAGAAAACGGTGATATTGCCATCGATGATGGAATCCATCGAGGAGTTCAATATCCCTTTGCAGTAAATGAAAAGGTCCTAATAAAGAATTTGAGAAGCGTTCTGGGAAATAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACATCCCAGTGTCTGAATGGCTGGTTAGTACGCGTATTACAAAGTGATAGTTCATGTTCTTCTATAGGACTACATAGTTCGTTGTCTCATCAGACATTGTATTTACTAAAAATCATTGGGACTGGAGAAAATGTTCGGTTGCAATATCGGTCTCTTAGGAAGATCCTGAACACGACACCAGCTAACGAGGATAGCTGTCCCTCACAGCCCCTTCAGCACAGCAGCTCATAG MPFSSVGSHTENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQHSSS Homology
BLAST of Carg21978 vs. NCBI nr
Match: KAG7030554.1 (U-box domain-containing protein 62, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 274.2 bits (700), Expect = 5.9e-70 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Carg21978 vs. NCBI nr
Match: XP_023511739.1 (uncharacterized protein LOC111776223 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40 Identity = 95/126 (75.40%), Postives = 95/126 (75.40%), Query Frame = 0
BLAST of Carg21978 vs. NCBI nr
Match: XP_022990573.1 (uncharacterized protein LOC111487410 [Cucurbita maxima]) HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40 Identity = 95/126 (75.40%), Postives = 95/126 (75.40%), Query Frame = 0
BLAST of Carg21978 vs. NCBI nr
Match: KAG6599871.1 (U-box domain-containing protein 62, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40 Identity = 95/126 (75.40%), Postives = 95/126 (75.40%), Query Frame = 0
BLAST of Carg21978 vs. NCBI nr
Match: XP_022942565.1 (uncharacterized protein LOC111447566 [Cucurbita moschata]) HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40 Identity = 95/126 (75.40%), Postives = 95/126 (75.40%), Query Frame = 0
BLAST of Carg21978 vs. ExPASy Swiss-Prot
Match: Q6DBN5 (U-box domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=PUB62 PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Carg21978 vs. ExPASy Swiss-Prot
Match: Q58FY4 (U-box domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=PUB63 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.5e-09 Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 0
BLAST of Carg21978 vs. ExPASy TrEMBL
Match: A0A6J1JTN9 (uncharacterized protein LOC111487410 OS=Cucurbita maxima OX=3661 GN=LOC111487410 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 8.1e-41 Identity = 95/126 (75.40%), Postives = 95/126 (75.40%), Query Frame = 0
BLAST of Carg21978 vs. ExPASy TrEMBL
Match: A0A6J1FWI9 (uncharacterized protein LOC111447566 OS=Cucurbita moschata OX=3662 GN=LOC111447566 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 8.1e-41 Identity = 95/126 (75.40%), Postives = 95/126 (75.40%), Query Frame = 0
BLAST of Carg21978 vs. ExPASy TrEMBL
Match: A0A6J1DMB0 (uncharacterized protein LOC111022323 OS=Momordica charantia OX=3673 GN=LOC111022323 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 2.0e-39 Identity = 92/126 (73.02%), Postives = 93/126 (73.81%), Query Frame = 0
BLAST of Carg21978 vs. ExPASy TrEMBL
Match: A0A5A7SSH6 (RING/U-box superfamily protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G001180 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 4.6e-36 Identity = 87/126 (69.05%), Postives = 91/126 (72.22%), Query Frame = 0
BLAST of Carg21978 vs. ExPASy TrEMBL
Match: A0A5D3CRE0 (RING/U-box superfamily protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00920 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 4.6e-36 Identity = 87/126 (69.05%), Postives = 91/126 (72.22%), Query Frame = 0
BLAST of Carg21978 vs. TAIR 10
Match: AT3G19895.1 (RING/U-box superfamily protein ) HSP 1 Score: 115.5 bits (288), Expect = 3.2e-26 Identity = 65/125 (52.00%), Postives = 78/125 (62.40%), Query Frame = 0
BLAST of Carg21978 vs. TAIR 10
Match: AT5G05230.1 (RING/U-box superfamily protein ) HSP 1 Score: 67.8 bits (164), Expect = 7.8e-12 Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Carg21978 vs. TAIR 10
Match: AT2G40640.1 (RING/U-box superfamily protein ) HSP 1 Score: 62.8 bits (151), Expect = 2.5e-10 Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 0
BLAST of Carg21978 vs. TAIR 10
Match: AT2G40640.2 (RING/U-box superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 2.8e-09 Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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