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Carg21977 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCTCGCCGGCTGCTTCTCCCTTTTAGTAGCTCTGTTCTGTCTTCCGACTGTGCCGCCGCAGCCTCCCTCCTAGCGGATTTTCTCTGATTTTCTACTCTCTTCTTGTTACTGCTATTCTCCCAGTCTTCATGTGCGTCTTTTTTCTCGGTTGAACTATTCGGATTAAGACATATGTCTGCATTTTTCTTTATGACATATATCTGTCAATTGGGCTTTCATCATCTGTATATCTTTTGCTAATAATTAACTTATTCTTTGCTTGTGTTTCGGGAGCCCAGAGTGAGATGGATAGACGGACGAAGAAGCGCGACAAAAGGCTTCGCGAGAGTAACACCGAACCTGCCGTTGCAAAGGGTTTGTTTTTTACTTGCTACCTTGTATACTATATGCTTACTTTCTCATTACTTCTTCAGTTATCTTCGAACGGACTAGAACAAAGGTTGAAGAATATCTGCTTCTGGACTCCATTAATACCTTGAACTCCTAATTGTGTCTCCCTTCCTTCGGCACAGCATGTTTTTGTTTATTGGTTTTTAGTGCTTACCCCTATGGGTGATGGGGTTACCTATTTAATCCTCGTGCTCTGTTTTCATCCATGTCCACTTTCGTTCATTCCTTTATTTTCTAGAATGAAGGGGTTTAATATTATTGGTCATCTCGTATCGTTACTGAATTTCATTTCTTTTGTTTTTTCAGGCAGTATCGCCACTGAAGTTGATGAAGAAAAGAAGCGGAGAAGGTCATCGAAGAGGAGACTTCAACAAACGTCTTCCGATGAGACCCATCAACTCAATGTTAAGGCAGTAAATGCTTTAGAAGCACGTAACGGTATGTCAACTTCCTAAGTTCAGTACCGCAACCCTGTAGGTCCTTGTGAAAATAAATTGTTTTGTTGTTAATTGGTATATTCTATCTACGTCCTCTGATAGCATGCGTTAACTTTCTTTTTTATTGTTGCTATGAAGCTTTTGCTTTCTTTGGTCTCATCTTAAATAAGGGTGGTTTGAGGCTTGTTGCTTTGGGTATACATGGGGTATTGCCAGTTGAGTTGGTTAAGCCATTGTTTTCTTGTTTAATATCTTGATAATTAGGCGAGTTTGGTGAGGGATTTCAATTTCCTAGGGTTCTTGTGGTGAAAATGAGTGAGGGTGGCTTTTCCAGGTTTGTGAGGGAGTTTAATACGTTTATCAAGGAATTAGGATTTGAACTCTTGGACCTTCCTCTTGTTAATAGTAGATTTATGTGGCCCTGACTTAATGACTTGGAGTTAGTTTTCTTTTAATCATTGGCCTATCTTTTGGGGTATAGGTCATACGTTTATCAAGGAATTAGGATTTGAACTCTTGGTCCTTCCTCTTGTTAATAGTAGATTTATGTGGCCCGACTTAATGACTTGGAGTTACTTTTCTTTTGATCATTGGCCTATCTTTTGGGGTATAGGTCCTATTTCGTGTGGTCCTGCCCTTCTAGATTTGGAAATATATTGCTCTCTCATCCCTCTTTAACATGCTCATTCCTTTTCTAGTGGTGACCTTTAAGGAGTCATTGATTATTTGGGCTATCAGTTTTCTTATTCTCTTTGGAGTCGTTGCCTTGTGCTTGGGGTGGTGTGGGTGCATAACAAGGATTGTCTAACCATGGTTAAGGAGATCTTGATGGACTCACCCTTTTGTGAAAAGGGAAGAGTGTTGTGGCAATGTTCCTTCTCTATTTTATGGGAGGTGCGGCTTGAGAGGATTTACATTATGTTTAGAGGGGCTGAGAGATATTTGGAAGAGCTGTAGGAGGTGTTGAGGTTTAATAGCTCTTTATGGGCATCCCTGAATTTGATTTTTTGTTGTAATTATCAGATAGGTTTTATTCTTTTGGATCAAAGTCCTTATAGATAGTCGAGGACTCCTTTTGTGGCTTTGTTTTGTATGTCTTTGTACATTGTTTACTTTTTTTCAATAAAAGCTTGGTTTCATGTCAACAAAAAAATCTCTCCTTTCCTAGTGGGGTGTGTCGATGATGATGGTGGGAGGGTTTTCAATTATGTTAAAGTTGTTCTCGGTAAAGTTGGTTTTAAGAGTCTGGAACAGGAATAGTGATGTGTTTGAGGGTTGTAAGTAAAAAAAAAAAAAAAACAGGAGCTGTTAGTCAGTGGGATTCAAGGTAAATCAATAGGTGTTTCACATAGAGTGGGGAACAAATCAGTTAAGGGGGAAATATTGTCTTCTGTACTTTTCTTGTACACTATGCCCCTTTGTGGAAGACTGAAAGCCTTAAAATGGTGCCAAGTTTAGATAAGGATAGGGGAAGTCTAGTGGCCCTTTTTCATACTGGAAGAGATTAGGAAGATGGTTGTGGTTCTGAGTGGCTTGGTGAAGGTAGAGTAGGATGATGTGTTTCAGCGAGTTAGATGAGAGAGGTATCTTGTACTATAATAATCCAAGGTTTCATTGAGAAATATAATTTGTACAAGAGCATAACAAACAGCATCTAACAAACTACAGAAAGCAATCCCAATCCAAAAGAATAACGCCTAAATAATAGAATGCAAATAGGTTGATAAAGGACAGTATGACTAATATATTTGAAGTATTACAGCTCTACTAATATTAGCATAGTCTCAGGGATATTGTTAGATGTGATGTCTTTTTGTTGTGGGTGTTGGTTGCTCCATTTTTTTAAATTATTAGATAGCTCTTATTCTTTCAAACTGGAATCTATTTCTTAGATAGTGTTTGGACTCCTGTTGTGGGGCTTCTTTTTTCCCCCTTGTATATTGGTTCATTATGGTCAATGAAAGTTTGATTTGTCATTAAAGAAAAAAGAAAAAAAACTGATCCAGAAGTTGTCGTATTTGATCTTTGGGGTCTAGCGGTTTGTTTTGTGTACTAGTGCTTCTGAGGGTGCCCGAGACATTGTTGTGCCAAGGAACATTGCTTAGCACACCTTCAAGACTAGAGGATGCTTTGGTGTGTTCATTCTTATTTCCTTATGAAGCATTGGCATGAGATGAATAATATAATTTTTTGAGTGATCAGCCTGGGTTAAGTTCTATTTGTCTCTTTGGGTTTACGTGACCAAGGAAGTTGTGTAATTATTATGTCTTCTTTTAGAATTCTACCTACTATCTTTTCATTATTTTCTTTTTGTACTTCTTTGTCCCTGTCATGTAATTTATTAACTTGTTTATCTTCGTCCTGCAATTTAAGGCGTAAGTGTAGTCAAGGAAGATTGGGATCAATTTGATGTGGAGGGAGAAGATGCTGAAAAGCCCAGGAAAACTGGTAACTTAAACTGCCTCAACCTTTTTTGCAGCTGTCAGTCAATGTTACTGTTGCTGTGTGTGCCACCTTGGGAGTCTTTAGACATAACTGGTAGTTTTATTTGTAGATGAAGTAAAGAAAGAAAGGAAAAATAAAAAGAACCGCAAATCCTCAAACAATTGTGAAAACTCATTAGAAAATGGAAGAGCTACGCAGCCGGAAGCTTATCAGCCCCTGGAGGACAGTGGTGCATTCTTGAAAGGTATTAAAAATAGGGATGGAGTTTAAGTGATATATTTTACTACTAGAATATCTCTTGAACTGATGTACTAACAGAAAAGTTTCTTGTAGGCAAGGCCAAAAAATCTTCCAAAAAGAAAAGAAATGATTCAAATTCTCTGGATCCCAAGAAGTCGATAGAATCAAGTGATGATGTTAATGAAAATGATGTCTATCAAGTTTCTGTTGGAGATGAAGACACTTCAAAAGGGATGAAAAGTAAGAATTATGGGCATAATGTCATTTTATCTCAATGCTGCTCAATCTTCCCGCTTATTGCCAGAATTGTTTTTTATTATTAGTGCCTCGGTTGTAATAACCCGCCCTTCCCTCTCCTGATGGCTGTGAAATAAACCTTTCAAGTTCTCTTTAACTTTTTCTTAATCATTTGCTGAAGCATTGGCCTGCTTTGCGAGTTTAGAGGGAGATTACTGTATCATTCACATTTTAATAAAATATTCTGTTGGGTCTTTTAAATTTCACATTGACAACATTTTGGTCTGCAGAATGGATCAAAGAATATTATGAAAGTAGACCGGGATTGAAGGTACTGCAACAACGTATAGATGATTATATAACTGCACATGAGGCACGCCTAGAACAGGTAATGAATGTTTCCTTGAGCAACGACTCAACGTAAACCGTACATCCTTATTTATCATGGCAAGTTCTGCCTCTTAAACTGATTTCATGAATTTTGAGTGTGATTTGGAGCTATATATCCCTTTAGGACGAAGAACACCAAAATACTTTTAAGATGCTGAAGATACTTGAGCATTGATTATGTCATCTAATAACAGTCATGCATCAGATGTGCATATTTAGCCGTGTATTGAGCTGTTCACTTTGTTGTCACACAGGAAAAGGAAGAAAGGGAGGCTCAAGCAGCTGAAGGGGGATGGACAGTTGTTGTACATCAGAAAGGGAGAAAAAAGACCACGGATGCTGAAAGTGGGGTTACTGTGGGTTCGGTAGCGCAAAATGCTGTAGAGGATAAAATTTCCAAAAAGAAGCGGAAAGAAGTTGGGCTGGATTTCTATCGGTTCCAAAGAAGAGAAGCACAGAGGAATGGTATGGACAGTTATACTCCTAAAATCATAATAGATTTTATTCACACTTTCATATTTCAGCAGTCCTTGGAATTTTTATATTTCATGGTACTGGAGAAAGTAGTCCCAAGCGACTATTGGAATGGAGATTGTGTGTGCAGTGTCATTGCCTAATGTCTCATTCATTTTAACATTTTTTTTTTTTTTTATCTGTTGTGATATGTGTTCGCCATTGTTTTCCTTGAGCTTTCTGTATTCAGTTGGGGCCATATCAATGGTTGGTCTGCATGCATGCAAATTTTATTGGTTCAAAATTAAATGTTTTCTTCTTGATTTTGTTTTACTCAAACTCTAGTATTTCCCTTCTAGGAGGGTTATTTCTTTTAGGAATGTGCTGATACATAGCTGCTAACTTGGGGTGCGATAAACACTGGATATCCTATTCTAATTTCATTCGTCAATTTCTCATACAAGTGGATTGTTACAAGTGAAAGAAACAGAAGATTTGACTTCACTTAATATCTTATTTGATGCAGAGATTCTGATGTTACAAAGTAAATTTGAGCAAGACAAGAAACGGATACAGCAATTGAGAGCTGCTAGAAAATTCCGTCCTTATTGA TCTCGCCGGCTGCTTCTCCCTTTTAGTAGCTCTGTTCTGTCTTCCGACTGTGCCGCCGCAGCCTCCCTCCTAGCGGATTTTCTCTGATTTTCTACTCTCTTCTTGTTACTGCTATTCTCCCAGTCTTCATGTGCGTCTTTTTTCTCGGTTGAACTATTCGGATTAAGACATATGTCTGCATTTTTCTTTATGACATATATCTGTCAATTGGGCTTTCATCATCTGTATATCTTTTGCTAATAATTAACTTATTCTTTGCTTGTGTTTCGGGAGCCCAGAGTGAGATGGATAGACGGACGAAGAAGCGCGACAAAAGGCTTCGCGAGAGTAACACCGAACCTGCCGTTGCAAAGGGCAGTATCGCCACTGAAGTTGATGAAGAAAAGAAGCGGAGAAGGTCATCGAAGAGGAGACTTCAACAAACGTCTTCCGATGAGACCCATCAACTCAATGTTAAGGCAGTAAATGCTTTAGAAGCACGTAACGGCGTAAGTGTAGTCAAGGAAGATTGGGATCAATTTGATGTGGAGGGAGAAGATGCTGAAAAGCCCAGGAAAACTGATGAAGTAAAGAAAGAAAGGAAAAATAAAAAGAACCGCAAATCCTCAAACAATTGTGAAAACTCATTAGAAAATGGAAGAGCTACGCAGCCGGAAGCTTATCAGCCCCTGGAGGACAGTGGTGCATTCTTGAAAGGCAAGGCCAAAAAATCTTCCAAAAAGAAAAGAAATGATTCAAATTCTCTGGATCCCAAGAAGTCGATAGAATCAAGTGATGATGTTAATGAAAATGATGTCTATCAAGTTTCTGTTGGAGATGAAGACACTTCAAAAGGGATGAAAAAATGGATCAAAGAATATTATGAAAGTAGACCGGGATTGAAGGTACTGCAACAACGTATAGATGATTATATAACTGCACATGAGGCACGCCTAGAACAGGAAAAGGAAGAAAGGGAGGCTCAAGCAGCTGAAGGGGGATGGACAGTTGTTGTACATCAGAAAGGGAGAAAAAAGACCACGGATGCTGAAAGTGGGGTTACTGTGGGTTCGGTAGCGCAAAATGCTGTAGAGGATAAAATTTCCAAAAAGAAGCGGAAAGAAGTTGGGCTGGATTTCTATCGGTTCCAAAGAAGAGAAGCACAGAGGAATGAGATTCTGATGTTACAAAGTAAATTTGAGCAAGACAAGAAACGGATACAGCAATTGAGAGCTGCTAGAAAATTCCGTCCTTATTGA ATGGATAGACGGACGAAGAAGCGCGACAAAAGGCTTCGCGAGAGTAACACCGAACCTGCCGTTGCAAAGGGCAGTATCGCCACTGAAGTTGATGAAGAAAAGAAGCGGAGAAGGTCATCGAAGAGGAGACTTCAACAAACGTCTTCCGATGAGACCCATCAACTCAATGTTAAGGCAGTAAATGCTTTAGAAGCACGTAACGGCGTAAGTGTAGTCAAGGAAGATTGGGATCAATTTGATGTGGAGGGAGAAGATGCTGAAAAGCCCAGGAAAACTGATGAAGTAAAGAAAGAAAGGAAAAATAAAAAGAACCGCAAATCCTCAAACAATTGTGAAAACTCATTAGAAAATGGAAGAGCTACGCAGCCGGAAGCTTATCAGCCCCTGGAGGACAGTGGTGCATTCTTGAAAGGCAAGGCCAAAAAATCTTCCAAAAAGAAAAGAAATGATTCAAATTCTCTGGATCCCAAGAAGTCGATAGAATCAAGTGATGATGTTAATGAAAATGATGTCTATCAAGTTTCTGTTGGAGATGAAGACACTTCAAAAGGGATGAAAAAATGGATCAAAGAATATTATGAAAGTAGACCGGGATTGAAGGTACTGCAACAACGTATAGATGATTATATAACTGCACATGAGGCACGCCTAGAACAGGAAAAGGAAGAAAGGGAGGCTCAAGCAGCTGAAGGGGGATGGACAGTTGTTGTACATCAGAAAGGGAGAAAAAAGACCACGGATGCTGAAAGTGGGGTTACTGTGGGTTCGGTAGCGCAAAATGCTGTAGAGGATAAAATTTCCAAAAAGAAGCGGAAAGAAGTTGGGCTGGATTTCTATCGGTTCCAAAGAAGAGAAGCACAGAGGAATGAGATTCTGATGTTACAAAGTAAATTTGAGCAAGACAAGAAACGGATACAGCAATTGAGAGCTGCTAGAAAATTCCGTCCTTATTGA MDRRTKKRDKRLRESNTEPAVAKGSIATEVDEEKKRRRSSKRRLQQTSSDETHQLNVKAVNALEARNGVSVVKEDWDQFDVEGEDAEKPRKTDEVKKERKNKKNRKSSNNCENSLENGRATQPEAYQPLEDSGAFLKGKAKKSSKKKRNDSNSLDPKKSIESSDDVNENDVYQVSVGDEDTSKGMKKWIKEYYESRPGLKVLQQRIDDYITAHEARLEQEKEEREAQAAEGGWTVVVHQKGRKKTTDAESGVTVGSVAQNAVEDKISKKKRKEVGLDFYRFQRREAQRNEILMLQSKFEQDKKRIQQLRAARKFRPY Homology
BLAST of Carg21977 vs. NCBI nr
Match: KAG7030553.1 (Ribosomal RNA-processing protein 7-like A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 580.9 bits (1496), Expect = 6.8e-162 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
BLAST of Carg21977 vs. NCBI nr
Match: XP_022942572.1 (uncharacterized protein DDB_G0283697 isoform X1 [Cucurbita moschata] >XP_022942575.1 uncharacterized protein DDB_G0283697 isoform X1 [Cucurbita moschata]) HSP 1 Score: 575.5 bits (1482), Expect = 2.9e-160 Identity = 315/317 (99.37%), Postives = 316/317 (99.68%), Query Frame = 0
BLAST of Carg21977 vs. NCBI nr
Match: KAG6599870.1 (Ribosomal RNA-processing protein 7-like A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 572.8 bits (1475), Expect = 1.9e-159 Identity = 314/317 (99.05%), Postives = 316/317 (99.68%), Query Frame = 0
BLAST of Carg21977 vs. NCBI nr
Match: XP_022942576.1 (uncharacterized protein DDB_G0283697 isoform X2 [Cucurbita moschata]) HSP 1 Score: 566.6 bits (1459), Expect = 1.3e-157 Identity = 313/317 (98.74%), Postives = 314/317 (99.05%), Query Frame = 0
BLAST of Carg21977 vs. NCBI nr
Match: XP_023553366.1 (uncharacterized protein DDB_G0283697 [Cucurbita pepo subsp. pepo] >XP_023554046.1 uncharacterized protein DDB_G0283697 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 565.8 bits (1457), Expect = 2.3e-157 Identity = 310/317 (97.79%), Postives = 315/317 (99.37%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy Swiss-Prot
Match: Q9Y3A4 (Ribosomal RNA-processing protein 7 homolog A OS=Homo sapiens OX=9606 GN=RRP7A PE=1 SV=2) HSP 1 Score: 74.3 bits (181), Expect = 2.7e-12 Identity = 50/147 (34.01%), Postives = 83/147 (56.46%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy Swiss-Prot
Match: Q5RA17 (Ribosomal RNA-processing protein 7 homolog A OS=Pongo abelii OX=9601 GN=RRP7A PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 4.6e-12 Identity = 50/147 (34.01%), Postives = 83/147 (56.46%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy Swiss-Prot
Match: Q9D1C9 (Ribosomal RNA-processing protein 7 homolog A OS=Mus musculus OX=10090 GN=Rrp7a PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.5e-10 Identity = 48/147 (32.65%), Postives = 81/147 (55.10%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy Swiss-Prot
Match: O94683 (Ribosomal RNA-processing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp7 PE=3 SV=2) HSP 1 Score: 56.2 bits (134), Expect = 7.7e-07 Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy Swiss-Prot
Match: P25368 (Ribosomal RNA-processing protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP7 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 2.7e-04 Identity = 36/117 (30.77%), Postives = 66/117 (56.41%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy TrEMBL
Match: A0A6J1FWJ5 (uncharacterized protein DDB_G0283697 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447572 PE=3 SV=1) HSP 1 Score: 575.5 bits (1482), Expect = 1.4e-160 Identity = 315/317 (99.37%), Postives = 316/317 (99.68%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy TrEMBL
Match: A0A6J1FP89 (uncharacterized protein DDB_G0283697 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447572 PE=3 SV=1) HSP 1 Score: 566.6 bits (1459), Expect = 6.5e-158 Identity = 313/317 (98.74%), Postives = 314/317 (99.05%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy TrEMBL
Match: A0A6J1JSI4 (uncharacterized protein LOC111487444 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487444 PE=3 SV=1) HSP 1 Score: 565.5 bits (1456), Expect = 1.4e-157 Identity = 311/317 (98.11%), Postives = 314/317 (99.05%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy TrEMBL
Match: A0A6J1JJB4 (uncharacterized protein DDB_G0283697 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487444 PE=3 SV=1) HSP 1 Score: 559.7 bits (1441), Expect = 7.9e-156 Identity = 310/317 (97.79%), Postives = 313/317 (98.74%), Query Frame = 0
BLAST of Carg21977 vs. ExPASy TrEMBL
Match: A0A6J1DMA0 (uncharacterized protein LOC111022313 OS=Momordica charantia OX=3673 GN=LOC111022313 PE=3 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 2.4e-120 Identity = 247/317 (77.92%), Postives = 281/317 (88.64%), Query Frame = 0
BLAST of Carg21977 vs. TAIR 10
Match: AT5G38720.1 (unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). ) HSP 1 Score: 201.1 bits (510), Expect = 1.4e-51 Identity = 140/317 (44.16%), Postives = 201/317 (63.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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