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Carg21975 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTTTTCCTGTCATTTCATTTCTTTACCCCTTCCATACCATTCATTCATCTTCCATCTCTTTGAGAACACTGTGTTTGAGGCTCCCTTTTTCTGAACTTGTTGTTCAGTTGAGAGAAATGCAAAGCAGCAGCGTTTCAGAAACAGAAGAGGGAAGCATTAAGGCTGAAAGAAGATCAGGAATGGAAGCTCAGGTGGTTGAAGTGGACATGGAGTTTTGGCCATTGCAGCATCCCACGGAACCTGATGATGAAGACCGCCCTGTCGTTTGCCCAATGCCCAACTCTTCTTCCATTCTTGACGTAACACTTCTTTTTCATTTACTTCCACCACGCCATGTGTTATCATCACACCTACCTCATACCTTCATCTCACAACAACTATAACTGTTTGTTAAACTGATGTTTGAAATGGAAAACAGGAAGGAACCATGCACAACGGCAAGAGGGCACCAGAAAGCTGGAGGAAAAGAACAGAAGTGTCTAGAGAAGTTAAAGCATCAGCCGAGACGGCGGTGAGGGTGGTGCGGAAGCGGCACCACCATACGCTCAGCCGACCCGACCACCTGATGGGAGGAATGTCGCCGGTTCCTCTGCTGCCGACCACCCAGAACTTCACCATCTTCCAAATGCTTCAGCAGTTGGACAAATTTGAGTCTTGACAATGAAACAAAAGGGCACGGCAGCTATAAGGTCAAATTACCAAAGTGACAGATAATGCAAATATATTTTGATATGTTTAGTGATTATTATTTTATATATATAGATATATGGATATGGATATTTTGTGTTGAGAGATATGATATGGGTGTGAATTAGAAGACATATTTTGTGTTTGGATTTTGTGTATTTGGTAAAGTTGAAACTGTGCCGTTGTGGACTCCAATTGTTAAAGTGAAGTATGGAGGGGTTTGGTATAAAGGAAAAAGTAAATTTACTGAGAAGGAAGT TGTTTTCCTGTCATTTCATTTCTTTACCCCTTCCATACCATTCATTCATCTTCCATCTCTTTGAGAACACTGTGTTTGAGGCTCCCTTTTTCTGAACTTGTTGTTCAGTTGAGAGAAATGCAAAGCAGCAGCGTTTCAGAAACAGAAGAGGGAAGCATTAAGGCTGAAAGAAGATCAGGAATGGAAGCTCAGGTGGTTGAAGTGGACATGGAGTTTTGGCCATTGCAGCATCCCACGGAACCTGATGATGAAGACCGCCCTGTCGTTTGCCCAATGCCCAACTCTTCTTCCATTCTTGACGAAGGAACCATGCACAACGGCAAGAGGGCACCAGAAAGCTGGAGGAAAAGAACAGAAGTGTCTAGAGAAGTTAAAGCATCAGCCGAGACGGCGGTGAGGGTGGTGCGGAAGCGGCACCACCATACGCTCAGCCGACCCGACCACCTGATGGGAGGAATGTCGCCGGTTCCTCTGCTGCCGACCACCCAGAACTTCACCATCTTCCAAATGCTTCAGCAGTTGGACAAATTTGAGTCTTGACAATGAAACAAAAGGGCACGGCAGCTATAAGGTCAAATTACCAAAGTGACAGATAATGCAAATATATTTTGATATGTTTAGTGATTATTATTTTATATATATAGATATATGGATATGGATATTTTGTGTTGAGAGATATGATATGGGTGTGAATTAGAAGACATATTTTGTGTTTGGATTTTGTGTATTTGGTAAAGTTGAAACTGTGCCGTTGTGGACTCCAATTGTTAAAGTGAAGTATGGAGGGGTTTGGTATAAAGGAAAAAGTAAATTTACTGAGAAGGAAGT TGTTTTCCTGTCATTTCATTTCTTTACCCCTTCCATACCATTCATTCATCTTCCATCTCTTTGAGAACACTGTGTTTGAGGCTCCCTTTTTCTGAACTTGTTGTTCAGTTGAGAGAAATGCAAAGCAGCAGCGTTTCAGAAACAGAAGAGGGAAGCATTAAGGCTGAAAGAAGATCAGGAATGGAAGCTCAGGTGGTTGAAGTGGACATGGAGTTTTGGCCATTGCAGCATCCCACGGAACCTGATGATGAAGACCGCCCTGTCGTTTGCCCAATGCCCAACTCTTCTTCCATTCTTGACGAAGGAACCATGCACAACGGCAAGAGGGCACCAGAAAGCTGGAGGAAAAGAACAGAAGTGTCTAGAGAAGTTAAAGCATCAGCCGAGACGGCGGTGAGGGTGGTGCGGAAGCGGCACCACCATACGCTCAGCCGACCCGACCACCTGATGGGAGGAATGTCGCCGGTTCCTCTGCTGCCGACCACCCAGAACTTCACCATCTTCCAAATGCTTCAGCAGTTGGACAAATTTGAGTCTTGA CFPVISFLYPFHTIHSSSISLRTLCLRLPFSELVVQLREMQSSSVSETEEGSIKAERRSGMEAQVVEVDMEFWPLQHPTEPDDEDRPVVCPMPNSSSILDEGTMHNGKRAPESWRKRTEVSREVKASAETAVRVVRKRHHHTLSRPDHLMGGMSPVPLLPTTQNFTIFQMLQQLDKFES Homology
BLAST of Carg21975 vs. NCBI nr
Match: KAG7030551.1 (hypothetical protein SDJN02_04588, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 355.5 bits (911), Expect = 2.6e-94 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
BLAST of Carg21975 vs. NCBI nr
Match: XP_022942644.1 (uncharacterized protein LOC111447618 [Cucurbita moschata] >XP_022984750.1 uncharacterized protein LOC111482932 [Cucurbita maxima] >KAG6599867.1 hypothetical protein SDJN03_05100, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg21975 vs. NCBI nr
Match: XP_023551192.1 (uncharacterized protein LOC111808825 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 278.5 bits (711), Expect = 4.1e-71 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg21975 vs. NCBI nr
Match: XP_022156065.1 (uncharacterized protein LOC111023031 [Momordica charantia]) HSP 1 Score: 189.5 bits (480), Expect = 2.5e-44 Identity = 101/141 (71.63%), Postives = 112/141 (79.43%), Query Frame = 0
BLAST of Carg21975 vs. NCBI nr
Match: XP_004140415.1 (uncharacterized protein LOC101204044 [Cucumis sativus] >KGN50779.1 hypothetical protein Csa_004700 [Cucumis sativus]) HSP 1 Score: 183.0 bits (463), Expect = 2.3e-42 Identity = 93/120 (77.50%), Postives = 100/120 (83.33%), Query Frame = 0
BLAST of Carg21975 vs. ExPASy TrEMBL
Match: A0A6J1J9G4 (uncharacterized protein LOC111482932 OS=Cucurbita maxima OX=3661 GN=LOC111482932 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 5.2e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg21975 vs. ExPASy TrEMBL
Match: A0A6J1FRX2 (uncharacterized protein LOC111447618 OS=Cucurbita moschata OX=3662 GN=LOC111447618 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 5.2e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg21975 vs. ExPASy TrEMBL
Match: A0A6J1DP94 (uncharacterized protein LOC111023031 OS=Momordica charantia OX=3673 GN=LOC111023031 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 1.2e-44 Identity = 101/141 (71.63%), Postives = 112/141 (79.43%), Query Frame = 0
BLAST of Carg21975 vs. ExPASy TrEMBL
Match: A0A0A0KPE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G258200 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.1e-42 Identity = 93/120 (77.50%), Postives = 100/120 (83.33%), Query Frame = 0
BLAST of Carg21975 vs. ExPASy TrEMBL
Match: A0A5A7SM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00230 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 7.3e-42 Identity = 91/120 (75.83%), Postives = 99/120 (82.50%), Query Frame = 0
BLAST of Carg21975 vs. TAIR 10
Match: AT2G01913.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08 Identity = 43/137 (31.39%), Postives = 67/137 (48.91%), Query Frame = 0
BLAST of Carg21975 vs. TAIR 10
Match: AT2G35585.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31940.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05 Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 0
BLAST of Carg21975 vs. TAIR 10
Match: AT1G31940.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04 Identity = 23/64 (35.94%), Postives = 34/64 (53.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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