Carg21936 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21936
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionElf4-like
LocationCarg_Chr11: 3267481 .. 3270633 (-)
RNA-Seq ExpressionCarg21936
SyntenyCarg21936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTGTAATTCTCAAGGATTCAGAGAGCGGGGGCGGTAGGGGCGGTAGGGGCTTGTTTCGGAGATTCCATTGAAGCCGCGAACCTTTTCTCTTCTCTTTGGATTTCTGTGTTCTTTGTGTGCTTTCCTTTTGCCCTTTTGCTTTTCTCTCTTCCTTTATACTGCGCTCCTCGTCCTTCCGAACCATTTTTTCATTTTTCAATCCGTGTGTATCTTCTTCTCTCCCGATGTAATGTTCCAGATTTTCAAGGTACTCACTCTTTACTAATCTTTGTCAATCTCTTTGTACGATTATAGAAGGAATTACTAATCATAATCAATCTCATGTCTCTTCGGAGTTACTTTTTTTTTTTTTTTGTGTTTCTGTTTCTCTGAGACATTGATTTTGATATTATCTGCCGGTGTTGCTGTTGATTTTGTGATTCTTTTGGAATTAGTGTTTTAATTTGACGATTCTGGCTTCTGCGTTGTGATTTTTGTTATGAATTGAGTTCTGGGTTGTGATTTGAATTTGTGTTTGTTGATGAATTTGCCGCGTTTTGGGAGTTTGGAGAGTTCGTAATCCTTCCCAATCTCGAGATGTGTTTGAGGAAATTTGGATTTAGTTTCTCTTTGAATGTGTTCATGAGTTCATAGGTTGAGTATGTGTTTGAGAGGGTCAATAATGGTGTCTCGCTATTCAGATGCTCTGATGGGCTCATATTTCTGCATCATTGACTGGTTTTTTTGGGTCCTTGGAATACCTGTTTAGAACTCTGAGCCTTAGTGGGTTTTCTCTGAGCACATTAAAAAAGGTTCCCTTTTATAGAAATGTTTTCTGCTTTTTTCTCTATCTCATCATAAATCAATTAAAATATCACATAATTATTATAAATCCTCCATCTTTGTTTATCTGATTCCTCTGTTTCGATTCTGGATTGTGGTGCTCATCATTCCTTTCTACTGTTCTTGTCTCATGTGCTTAAATTTCAAATTAAACAGAAATTCATGAATTACAAACTCATGATCTTCTTGTTGTTCTTCTTCCATGTTCTGATGCTCAGAAGATTCTGATTTGATAGACTTCTCAGCTGTAAAACTATGGAGGGCGACACATTTTCAGGGATTGGGAGTACTGCACAGATCGATAGCAAGATTTTACAGACATTTCATAAGAACTTTGTTCAAGTTCAAAACATATTGGATCAAAACAAGCTGCTGATTAGCGAGATAAACCAAAACCACGAATCAAAGATCCCTGATAATCTAAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTGTTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCCTTGAAGTCAGATGGTAAAGCAGGCCAGAAGAGGAACAGGGCTGTCTAGGCCACAAAATTCTTCCTTCTCCATTCTTTGGCGTGGTGGGACACAAGGAAAACATTGCTCATCTCTGTCAAAAAAGGCTAGTATTTCAATAGATTCCCTGTAACTTTCTTGTATGATTTAACTCTCTAGTTTTACTTAGTTCTTAATCATCCTTGCATTGCTTAGAGAAAAATAATCGTCCTGATTCTGTATTTAATTGCTGTTCTCAACTGTGGATCTGCTTGGCGAAATTAGCATAAAGTTCTCATCTGATTTCTTGTTTTGGTTTCTAACTTTGATGCCCTGTGTACCTGCATAGACTTGGTTAGATAGCATTTGTTTCTTGTCTTAGTTTTTTTTAGAGATTCAAAACTTTGACCTCTTTATCGATGATATATGTGAAAAATTCAAAATTCTGAACTTTTGATAGATGATATATGTGAAATGACTATCACATACGACTAGAAATGATTACGATAAACAAGAAACAATAAATAAGAACAGATTTCTGCCCCTAATGGTACAAAAGTTCTTTCTTCAATACTTTTTTGGCCAAAATCTCATCTGGGTTCTAGCTTTCTGCCCCTAATTATAGCTTATAGGCTACTGTTTTGGGTCTTATGAACTCAGATCTCTTCTGTTGGTGGTTTCTGCTTTAAATAAAAAAAAAAATTTACTGTCCATAATTGAGTTTTGTTAGGGAGTAGAACAAACCATTCTTTATGAAAGGTGTAGAAATCTCTCCTTAGAAGATGCGTTTTAAGAGAAAACCCAAAGAGGACATTCCTAATGTCTTTTGAAAATCCGTAAGGGGAAGTCTGTAAGGGAAAATCCAAAACGGACAATATCTATGCTAGCGGTGGGCTTGAGATATTACAGAGCTTGTTCTACAATACGAAAACGGAAGATAACTCTGAACATCAGGATTCAGCTGGTTTCTCTTTTGATCTTCATCAAACACCAACCAAACAGAATCTGAGATAAAGGATGATTAGCTTTTTGACCCTTTTTTGTTTGCGTTTTGTTTTGGAATTATAGATATTATGGAAGTCTTGCATTCTATTCCATGTGAACAGTTACCATTTCTTGGTGGGATCTGCTTTGCAAATTATAGTATTCTTTGGATAGTTCAAAATGAAGCACTCAGAGTTCAAACAGCCATTCTGAAGTAGAAGACAAAGTTCCAAAACAAGCCTCTGTTGTGTGGATTGGGCAATGACCTCTAAAATTTCCCACCCTTCTTTTTCTTTTACCTTACAAAAAGGTATATTCTTGAACAACAAAAGCTGGAAAAACACTTCCAAGTTATGTTCCATAAGTCTTGTTTGATCATGATTTGATTCCTCAACCCCCTCTCCTTTTCCTTCTTATCTTTGTGCTTCTAACCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTTTAATTCTCATACTCGCAAGATCTAACTATACTTTTTGACTATGATATTCGATGAACTTTAGTTTATGCCAAAAGCCAAAGAAGTTAGTTGCTTTTTCGAGCTTTAAACTATAAAAATAAGCTCAGATCTATGTTAAAAGGAAAAAAGAAGAACTACAGCAAAGCTCAAACGAGCAACTCTATTCATATTATCGACTTGAAACAAGTCGTAATCGATTCAATCCCGTTTCTCGATTTTGGGTCGTAGAGTTTATTGGTATTGATGTTCTTCTTTAAGGGACAAGGGTAA

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTGTAATTCTCAAGGATTCAGAGAGCGGGGGCGGTAGGGGCGGTAGGGGCTTGTTTCGGAGATTCCATTGAAGCCGCGAACCTTTTCTCTTCTCTTTGGATTTCTGTGTTCTTTGTGTGCTTTCCTTTTGCCCTTTTGCTTTTCTCTCTTCCTTTATACTGCGCTCCTCGTCCTTCCGAACCATTTTTTCATTTTTCAATCCGTGTGTATCTTCTTCTCTCCCGATGTAATGTTCCAGATTTTCAAGAAGATTCTGATTTGATAGACTTCTCAGCTGTAAAACTATGGAGGGCGACACATTTTCAGGGATTGGGAGTACTGCACAGATCGATAGCAAGATTTTACAGACATTTCATAAGAACTTTGTTCAAGTTCAAAACATATTGGATCAAAACAAGCTGCTGATTAGCGAGATAAACCAAAACCACGAATCAAAGATCCCTGATAATCTAAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTGTTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCCTTGAAGTCAGATGGTAAAGCAGGCCAGAAGAGGAACAGGGCTGGACAAGGGTAA

Coding sequence (CDS)

ATGGAGGGCGACACATTTTCAGGGATTGGGAGTACTGCACAGATCGATAGCAAGATTTTACAGACATTTCATAAGAACTTTGTTCAAGTTCAAAACATATTGGATCAAAACAAGCTGCTGATTAGCGAGATAAACCAAAACCACGAATCAAAGATCCCTGATAATCTAAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTGTTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCCTTGAAGTCAGATGGTAAAGCAGGCCAGAAGAGGAACAGGGCTGGACAAGGGTAA

Protein sequence

MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAGQG
Homology
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BLAST of Carg21936 vs. NCBI nr
Match: KAG7021961.1 (Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.7 bits (561), Expect = 6.6e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAGQG 117
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAGQG
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAGQG 116

[Close]
BLAST of Carg21936 vs. NCBI nr
Match: XP_022933909.1 (protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022933910.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022933911.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022968596.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022968604.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022968613.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_023529215.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023529216.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >KAG6588067.1 Protein ELF4-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. NCBI nr
Match: XP_022961237.1 (protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022961238.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022961239.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022987288.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022987289.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022987290.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_023516901.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023516902.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023516903.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >KAG6590027.1 Protein ELF4-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023688.1 Protein ELF4-LIKE 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 2.0e-50
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. NCBI nr
Match: XP_004144022.1 (protein ELF4-LIKE 4 [Cucumis sativus] >XP_008450908.1 PREDICTED: protein ELF4-LIKE 4 [Cucumis melo] >XP_008450909.1 PREDICTED: protein ELF4-LIKE 4 [Cucumis melo] >XP_008450910.1 PREDICTED: protein ELF4-LIKE 4 [Cucumis melo] >XP_011660014.1 protein ELF4-LIKE 4 [Cucumis sativus] >XP_031736193.1 protein ELF4-LIKE 4 [Cucumis sativus] >XP_031736194.1 protein ELF4-LIKE 4 [Cucumis sativus] >XP_038878351.1 protein ELF4-LIKE 4 [Benincasa hispida] >XP_038878352.1 protein ELF4-LIKE 4 [Benincasa hispida] >KAA0055791.1 protein ELF4-LIKE 4-like isoform X2 [Cucumis melo var. makuwa] >KGN66281.1 hypothetical protein Csa_007334 [Cucumis sativus] >TYK10042.1 protein ELF4-LIKE 4-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 3.4e-50
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS+ QIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. NCBI nr
Match: XP_022147541.1 (protein ELF4-LIKE 4 [Momordica charantia])

HSP 1 Score: 194.9 bits (494), Expect = 3.9e-46
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS AQID KILQ F KNFVQVQ+ILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSGAQIDGKILQRFQKNFVQVQSILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNR 113
           GLIRELNNNIRRVVDLYADLS +FTRS+EVSSEGDSSGALKSDGKAGQKRNR
Sbjct: 61  GLIRELNNNIRRVVDLYADLSYNFTRSVEVSSEGDSSGALKSDGKAGQKRNR 112

[Close]
BLAST of Carg21936 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.8e-37
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGD  SG G    +D K+LQ+F K+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAG 115
           GLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG LKSDGKA QKR R+G
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

[Close]
BLAST of Carg21936 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.3e-35
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGD +SG G   Q+D K+LQ F K+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKA-GQKRNRAG 115
           GLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G LKSDGKA  QKR R+G
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

[Close]
BLAST of Carg21936 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.9e-33
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 0 

Query: 1  MEGDTFSG-IGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRN 60
          MEGDT S  +GS  Q+D KILQTF K+FVQVQNILD N+LLI+EINQNHESKIPDNL RN
Sbjct: 1  MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61 VGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS 98
          VGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Sbjct: 61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSS 98

[Close]
BLAST of Carg21936 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 16  DSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVD 75
           D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 76  LYADLSCSFTRSMEVSSEGDSSG 99
           +Y+DL+ SF+        G   G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGG 104

[Close]
BLAST of Carg21936 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-13
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 0 

Query: 2   EGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVG 61
           E D      S A  D ++  T    F + Q  LDQN+ LI  +N+NH S+IPDN++RNVG
Sbjct: 20  ENDGEDVAASAAVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVG 79

Query: 62  LIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS 98
           LI E+N NI +V+++Y+DLS +F +  +     + +GD++
Sbjct: 80  LINEINGNISQVMEIYSDLSLNFAKKFDQRRRTTKDGDTT 119

[Close]
BLAST of Carg21936 vs. ExPASy TrEMBL
Match: A0A6J1I047 (protein ELF4-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111467765 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. ExPASy TrEMBL
Match: A0A6J1F126 (protein ELF4-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441179 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. ExPASy TrEMBL
Match: A0A6J1JGF0 (protein ELF4-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111484884 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.6e-51
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. ExPASy TrEMBL
Match: A0A6J1H9N1 (protein ELF4-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111461807 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.6e-51
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. ExPASy TrEMBL
Match: A0A1S3BQA6 (protein ELF4-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103492357 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS+ QIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]
BLAST of Carg21936 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-38
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGD  SG G    +D K+LQ+F K+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAG 115
           GLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG LKSDGKA QKR R+G
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

[Close]
BLAST of Carg21936 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-38
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGD  SG G    +D K+LQ+F K+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAG 115
           GLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG LKSDGKA QKR R+G
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

[Close]
BLAST of Carg21936 vs. TAIR 10
Match: AT1G72630.1 (ELF4-like 2 )

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-36
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 0 

Query: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGD +SG G   Q+D K+LQ F K+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKA-GQKRNRAG 115
           GLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G LKSDGKA  QKR R+G
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

[Close]
BLAST of Carg21936 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-34
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 0 

Query: 1  MEGDTFSG-IGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRN 60
          MEGDT S  +GS  Q+D KILQTF K+FVQVQNILD N+LLI+EINQNHESKIPDNL RN
Sbjct: 1  MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61 VGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS 98
          VGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Sbjct: 61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSS 98

[Close]
BLAST of Carg21936 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 16  DSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVD 75
           D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 76  LYADLSCSFTRSMEVSSEGDSSG 99
           +Y+DL+ SF+        G   G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGG 104

The following BLAST results are available for this feature:
BLAST of Carg21936 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021961.16.6e-54100.00Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022933909.12.1e-52100.00protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022933910.1 protein ELF4-LIKE ... [more]
XP_022961237.12.0e-5096.46protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022961238.1 protein ELF4-LIKE ... [more]
XP_004144022.13.4e-5096.46protein ELF4-LIKE 4 [Cucumis sativus] >XP_008450908.1 PREDICTED: protein ELF4-LI... [more]
XP_022147541.13.9e-4691.96protein ELF4-LIKE 4 [Momordica charantia][more]
BLAST of Carg21936 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q570U65.8e-3771.05Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1[more]
Q94BS89.3e-3569.57Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1[more]
Q8S8F53.9e-3376.53Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1[more]
O042112.0e-1342.17Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1[more]
O808773.4e-1340.00Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1[more]
BLAST of Carg21936 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0471.0e-52100.00protein ELF4-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111467765 PE=3 SV=1[more]
A0A6J1F1261.0e-52100.00protein ELF4-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441179 PE=3 SV=1[more]
A0A6J1JGF09.6e-5196.46protein ELF4-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111484884 PE=3 SV=1[more]
A0A6J1H9N19.6e-5196.46protein ELF4-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111461807 PE=3 SV=1[more]
A0A1S3BQA61.6e-5096.46protein ELF4-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103492357 PE=3 SV=1[more]
BLAST of Carg21936 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G17455.14.1e-3871.05ELF4-like 4 [more]
AT1G17455.24.1e-3871.05ELF4-like 4 [more]
AT1G72630.16.6e-3669.57ELF4-like 2 [more]
AT2G06255.12.8e-3476.53ELF4-like 3 [more]
AT2G40080.11.4e-1442.17Protein of unknown function (DUF1313) [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009741Protein EARLY FLOWERING 4 domainPFAMPF07011Elf4coord: 14..95
e-value: 3.9E-39
score: 132.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..116
NoneNo IPR availablePANTHERPTHR33469:SF16PROTEIN ELF4-LIKE 3coord: 1..113
IPR040462Protein EARLY FLOWERING 4PANTHERPTHR33469PROTEIN ELF4-LIKE 4coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21936-RACarg21936-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009649 entrainment of circadian clock
biological_process GO:0042753 positive regulation of circadian rhythm
cellular_component GO:0005634 nucleus