Carg21898 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21898
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein 24-A
Location	Carg_Chr05: 8313438 .. 8317502 (+)
RNA-Seq Expression	Carg21898
Synteny	Carg21898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAATCTCCTCCTGATTTTCTCTGTAAATCCTCTCAATTCATAAGGGTTTTCCTAGGGGTTTGATTTTTCTATGTGGGTTCCTCTCTAATCCTCCCCTAATCTTCCACTTGATCGAATCTCACTTACCCTTTGTGTCTCTGTTTATATTGTATATTGGGTGTTCACTTATTTCTCTCTTCTTCCTTTGGTTCTTAAGTTTCTCCATTAATAATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACTACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAGGATATGGTTTCGTGAGTATTAATGGTTTTTACTTTAATGGGTTTTTGTTAACTTTGTACTTTTGTTTCTACTTTCTTAAAGTAACAGCCTTAGAACATTCGTTTTGACCATTTTTTTGTAACAGCTAGTCGAATCTAATTGCTTGCTCATTAATATCTATATTGTCCACATTTGGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAATTATTGATGGAAGGCGAGCTAATTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGTATTATTTGCTTATTTGGTCTTTATTGTTTAGCAAATCGTGTTGTTTGTTCATGTCATGTGTATATGTATGATCAAGAGACTTTTCCTGGTTTATACAAAGGAAATGACGGTCAGAAATTCCTTGAAACGCTCGATTGATCGGTCTTTACTTCTACACTGTTGTTTCTTACAGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGCAACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACGGGTGTGTCCCCGAGGTTCCTCTTTGTGCATCCAAGCGTGCCGATATATCAAATTTAATTATTTTGTTAAACCTTGATATCTTTCGTTTTGCTTTATCACAACCTTTACATCTTGTAGTATGACTCTGTGGGGCTTGGTTTGCTTTAAAAAAATCGAAATTATGCTTTCCGGTTTGGTATTTCATTTTAAGTACCACAACCATGCGTGTTCTTTGAATGGACCTTTAGTTTTCTTGGTTTCTTAAAATGGTTTATAGACATTACTTGCTTGGTATTCATCCTCTGCAATGCCCTCTTAACGTTAGTATTCATCTTTAAAGACACTAGAGGCATAATATCAATCACTACATGCAACATTCCTTAGGATATGCTTCTTTGTCACCTCCTAGAAACCAGGATTGATACCTGGTCAGTGATGTGGCACATTGTGATTGGTAATTTTAGGAATACCATAAAATTTATTTGAAGATATGTGCCAAGACTAATGTAATTGAGCTAGAAGAAGCATGGCTAGTATTATTGGAGAAGTTTTATTTCTTGCTTTCACTTGCATTCGTAGTTTATACGAGAAGTCAAGTTAGTAGGATTTGATCACTCTGGTCTCTAGTGAATTGGGATACCAAATACTTGTCTTCCGGTATCGCAATGGACTGTGGGTTATAAAGTGATTCCGCCTGCTAAGTCTGCACCGCTTCAATTTATTCTACTATCTAGATTTCTGCTTTCATATTCTTATGTTTTAGAATATTTATAATATTTTCCCTCTTTCGTTTTTATGCAGTTATGCTACTTATGGACCGGAGTATGTCTACCCACAGGTATAGCTATAGCTTTATTTACTTGTGTCTGCAATTCTGTGTTTGGAGGGTGGAAGTAGGGAAGGGCGATACGTAGGGTATCTTGAAAAGTTTCTTAAGGTTTTCGATTGTTTTAGCATAATATGCTCGTTGGTTTTGATTTTTTGTGTCTTGTATTCTTTGCATAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGGTATTTTGCGTCGTATGCATATACTCCGTGCTGTTGTTATATGAAGATCACTCTTGTTTGCAACATCGCATAATATCAGTTTTGACTAGTCTTTTTAGGTATTTTTCTTTGTATTTGTATTTTTATTATCATCAATTGGATCTTTTTGTGTAATTGTGTAGTCTTTTCTGGATTCTCCTTCGGTTTGGTCCTTCGGTCTTTCTCTCGAGTCCATTTTTTTGTTCTTTATTTATTTTTCAGCAATGCCTTGTCTTAAAAATCTAGAAGAAGTGTGTTCGTCAACTCGTGTTCAATCATTGCATTGACATAGTTATGTGATGAACAACAGGACAAGGATCCATGCGGGTCAATGAGGAGAATAAGTTTGTTTTACTATAGAACCAAGAAGATATAATGTATCGAGACGTCTTCGTTGTTTAATACTATTTAGCTCACATTTCTGTATGTTTTACTTGTACCATGTTCTTGATCATCTGATGAGGAATAAAGGAAAACGAAAATAATATGCTTTTGCACGATCGATATGCTTGATTAGGAAAATGTGTTCGTTTATTTCATCAGGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGGTAAACTCCAAATTTTGCTGTTAATATTTGAAATTGTCCTTCCTATCTCTATCACCAGCAGTCTCTAACGGCCCACAATTTGACTACGTTCATAGGTATCAATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGTGTGGCGGGCTTCGGATCTAGCCTTGCAAATAATTTATCATGCATTCTAGAGGTAGTCTTATGCTCGCTGCATCGCTTTTTCAACAATTTTCATCTGTGGTCAGGATAACAACTATTTGAAAAGCATGTGTTAAAATCTTTGCTGTCATATCTTATTTCATATAGGATTATAGCAGAATGGTATGGTGAGTTCTGGAATATGAGCCCATGACATAGGGAACAACTAATCTGTGGGGGGTTTAAGGTTAGAATTGATGATGTGTTTGGATACTCATAGGAACGAGTGTGTAGGATGTCTAAACCGTGTAAACTGCCATGAATTGGCCGAGTGGTCGATAAAGATTATGTAAATAATAAAGGGTTTGAAGGGAATAGGTTCAAGACAATGGTGGCAACTTACTTCGCATATAAATATCTTTGACTACTAAATGCAATAGGATCAGGTAGTTGTCTCCTCGTGAGAATAGTCTTAGGTGCATCTTTCATTTCCACTTGCATTTGATTTTAAAAGTTCTCTTACTTAACTGCAGTTCTTCACAGTCATGCTCACCAGAGAAGTCGGATGGTGTCGAGTCGCTCCAGATGGTGGAGAAAGCATATGGAAGAGATGCAGGGCTGCTCTTTCTCTAATACCTTTGTTCTTCCCCAGTGTTTATAAAACTCTTATACACTGCCAATGCTCTGGAGAGCGGCAGGTCGTCATGGATTGATTGATGGGTGCTTGAAATCGGTTTTAAGCATCCATTTAGGAATAAAAACGTGTAAAAAAGAAGTCGAAAATAGAATCAACATATGATTCTTTTATAGTGAACTCCCAGCATTTTGGGTGTTGTATAGGAAGTGTCTCTGGTGGCTTTATGTGGTCATGGGTCTATCATCATCATCATCATCATCATCTTGGTACTCGTATATGATTTCCTTTAAGTTCATGTGCATATTAGTTCTAGGATTTCTTT

mRNA sequence

TTTCAATCTCCTCCTGATTTTCTCTGTAAATCCTCTCAATTCATAAGGGTTTTCCTAGGGGTTTGATTTTTCTATGTGGGTTCCTCTCTAATCCTCCCCTAATCTTCCACTTGATCGAATCTCACTTACCCTTTGTGTCTCTGTTTATATTGTATATTGGGTGTTCACTTCTTAAGTTTCTCCATTAATAATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACTACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAATTATTGATGGAAGGCGAGCTAATTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGCAACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACGGTTATGCTACTTATGGACCGGAGTATGTCTACCCACAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGCAATGCCTTGTCTTAAAAATCTAGAAGAAGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGTTCTTCACAGTCATGCTCACCAGAGAAGTCGGATGGTGTCGAGTCGCTCCAGATGGTGGAGAAAGCATATGGAAGAGATGCAGGGCTGCTCTTTCTCTAATACCTTTGTTCTTCCCCAGTGTTTATAAAACTCTTATACACTGCCAATGCTCTGGAGAGCGGCAGGTCGTCATGGATTGATTGATGGGTGCTTGAAATCGGTTTTAAGCATCCATTTAGGAATAAAAACGTGTAAAAAAGAAGTCGAAAATAGAATCAACATATGATTCTTTTATAGTGAACTCCCAGCATTTTGGGTGTTGTATAGGAAGTGTCTCTGGTGGCTTTATGTGGTCATGGGTCTATCATCATCATCATCATCATCATCTTGGTACTCGTATATGATTTCCTTTAAGTTCATGTGCATATTAGTTCTAGGATTTCTTT

Coding sequence (CDS)

ATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACTACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAATTATTGATGGAAGGCGAGCTAATTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGCAACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACGGTTATGCTACTTATGGACCGGAGTATGTCTACCCACAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGCAATGCCTTGTCTTAAAAATCTAGAAGAAGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGTTCTTCACAGTCATGCTCACCAGAGAAGTCGGATGGTGTCGAGTCGCTCCAGATGGTGGAGAAAGCATATGGAAGAGATGCAGGGCTGCTCTTTCTCTAA

Protein sequence

MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMPCLKNLEEGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISSSQSCSPEKSDGVESLQMVEKAYGRDAGLLFL

Homology

[Close]

BLAST of Carg21898 vs. NCBI nr
Match: KAG7030017.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 672.5 bits (1734), Expect = 1.8e-189
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
           VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSAMPCLKNLEEGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISS 300
           SSPMPTIQAPYPSAMPCLKNLEEGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISS
Sbjct: 241 SSPMPTIQAPYPSAMPCLKNLEEGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISS 300

Query: 301 SQSCSPEKSDGVESLQMVEKAYGRDAGLLFL 332
           SQSCSPEKSDGVESLQMVEKAYGRDAGLLFL
Sbjct: 301 SQSCSPEKSDGVESLQMVEKAYGRDAGLLFL 331

[Close]

BLAST of Carg21898 vs. NCBI nr
Match: XP_022946505.1 (RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protein 24-A [Cucurbita moschata])

HSP 1 Score: 527.3 bits (1357), Expect = 9.4e-146
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
           VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSAMP 257
           SSPMPTIQAPYPS +P
Sbjct: 241 SSPMPTIQAPYPSGIP 256

[Close]

BLAST of Carg21898 vs. NCBI nr
Match: KAG6599081.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 527.3 bits (1357), Expect = 9.4e-146
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
           VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSAMP 257
           SSPMPTIQAPYPS +P
Sbjct: 241 SSPMPTIQAPYPSGIP 256

[Close]

BLAST of Carg21898 vs. NCBI nr
Match: XP_023546044.1 (RNA-binding protein 24-A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 522.3 bits (1344), Expect = 3.0e-144
Identity = 251/256 (98.05%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGRGPSSISGSSSSS FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTP+IDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPY YATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
           VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSAMP 257
           SSPMPTIQAPYPS +P
Sbjct: 241 SSPMPTIQAPYPSGIP 256

[Close]

BLAST of Carg21898 vs. NCBI nr
Match: XP_022999744.1 (RNA-binding protein 24-A [Cucurbita maxima] >XP_022999745.1 RNA-binding protein 24-A [Cucurbita maxima])

HSP 1 Score: 521.5 bits (1342), Expect = 5.1e-144
Identity = 250/256 (97.66%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKN+GRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LRPPAVYVGGMQPNRGNY GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
           VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFGGPNVNPLT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSAMP 257
           SSPMPTIQAPYPS +P
Sbjct: 241 SSPMPTIQAPYPSGIP 256

[Close]

BLAST of Carg21898 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.6e-31
Identity = 94/211 (44.55%), Postives = 116/211 (54.98%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQ-PNR 136
           FVTF+D ++A RAC D TPII+GRRANCNLASLG        GRLR         Q P  
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG--------GRLRKSPTMTSPQQGPKN 121

Query: 137 GN-----YIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNPFVGQ- 196
           GN     ++GN   +  P  +  QQ       A P YGY +    YV P   +N  VG  
Sbjct: 122 GNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPS---AYVAPNMTFNQKVGYV 181

Query: 197 -------QYLQIYGVPGS-ASPAIYHYGQLG 207
                   Y Q+   P S   P  YH+   G
Sbjct: 182 GGTYMNGYYAQMQPQPQSQPQPQYYHHHMYG 201

[Close]

BLAST of Carg21898 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27
Identity = 82/201 (40.80%), Postives = 101/201 (50.25%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACVDPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+  P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQIHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQ 207
             Y Y Q    P        P        Y  +    Y Q      +A+   Y Y     
Sbjct: 127 AHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA---- 186

Query: 208 TVPGGHGY--GAVHGYAMPSP 227
             P   GY   A +GYA+P P
Sbjct: 187 ASPAATGYVTAAGYGYAVPQP 195

[Close]

BLAST of Carg21898 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.4e-27
Identity = 86/212 (40.57%), Postives = 104/212 (49.06%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACVDPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+  P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+ A   Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPSPQIVQFGGP 235
           Q      P   GY    GY     Q +    P
Sbjct: 187 QYPYAASPAAAGYVTAGGYGYAVQQPITAAAP 206

[Close]

BLAST of Carg21898 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.1e-27
Identity = 84/206 (40.78%), Postives = 105/206 (50.97%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 88  RACVDPTPIIDGRRANCNLASLG-RPR---PPISYGRLRPPAVYVGGMQPNRGNYIGNFG 147
           RAC DP PIIDGR+AN NLA LG +PR   P  ++G    P ++   +Q           
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG---VPQIHPAFIQR---------P 126

Query: 148 YQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGG--YNPFVGQQYLQIYGVPGSASPAIY- 207
           Y  P  Y Y Q    P        P          Y  + G  Y Q      +A+ A Y 
Sbjct: 127 YGIPTHYVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYE 186

Query: 208 HYGQLGQTVPGGHGYGAVHGYAMPSP 227
            Y         G+   A +GYAM  P
Sbjct: 187 QYPYAASPAATGYVAAAGYGYAMQQP 200

[Close]

BLAST of Carg21898 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-27
Identity = 85/212 (40.09%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACVDPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+  P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+ A   Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPSPQIVQFGGP 235
           Q      P   GY    GY+    Q +    P
Sbjct: 187 QYPYAASPAAAGYVTTGGYSYAVQQPITAAAP 206

[Close]

BLAST of Carg21898 vs. ExPASy TrEMBL
Match: A0A6J1G3W1 (RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.5e-146
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
           VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSAMP 257
           SSPMPTIQAPYPS +P
Sbjct: 241 SSPMPTIQAPYPSGIP 256

[Close]

BLAST of Carg21898 vs. ExPASy TrEMBL
Match: A0A6J1KGG8 (RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.5e-144
Identity = 250/256 (97.66%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKN+GRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LRPPAVYVGGMQPNRGNY GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
           VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFGGPNVNPLT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSAMP 257
           SSPMPTIQAPYPS +P
Sbjct: 241 SSPMPTIQAPYPSGIP 256

[Close]

BLAST of Carg21898 vs. ExPASy TrEMBL
Match: A0A0A0KHA9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 5.4e-139
Identity = 245/258 (94.96%), Postives = 248/258 (96.12%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSAMP 257
           LTSSPMPTIQAPYPS +P
Sbjct: 241 LTSSPMPTIQAPYPSGIP 258

[Close]

BLAST of Carg21898 vs. ExPASy TrEMBL
Match: A0A5D3CHF9 (RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00070 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 9.1e-139
Identity = 245/258 (94.96%), Postives = 248/258 (96.12%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSAMP 257
           LTSSPMPTIQAPYPS +P
Sbjct: 241 LTSSPMPTIQAPYPSGIP 258

[Close]

BLAST of Carg21898 vs. ExPASy TrEMBL
Match: A0A1S3CME8 (RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 9.1e-139
Identity = 245/258 (94.96%), Postives = 248/258 (96.12%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSAMP 257
           LTSSPMPTIQAPYPS +P
Sbjct: 241 LTSSPMPTIQAPYPSGIP 258

[Close]

BLAST of Carg21898 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 350.5 bits (898), Expect = 1.5e-96
Identity = 174/265 (65.66%), Postives = 206/265 (77.74%), Query Frame = 0


Query: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ   G        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILE
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGRPRPP+ Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY- 180
                GRLRP + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQF 240
             QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   I+Q 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 GGPNVNPLTSSPMPTIQAPYPSAMP 257
           GGP V+ +T+S MP +QAPYPS +P
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIP 256

[Close]

BLAST of Carg21898 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 317.0 bits (811), Expect = 1.8e-86
Identity = 162/250 (64.80%), Postives = 190/250 (76.00%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-------GRLRPPA 134
           KGYGFVTFRDPE+ARRACVDPTPIIDGRRANCNLASLGR RPP+ Y       GR+RPP+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q G        +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

[Close]

BLAST of Carg21898 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 317.0 bits (811), Expect = 1.8e-86
Identity = 162/250 (64.80%), Postives = 190/250 (76.00%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-------GRLRPPA 134
           KGYGFVTFRDPE+ARRACVDPTPIIDGRRANCNLASLGR RPP+ Y       GR+RPP+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q G        +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

[Close]

BLAST of Carg21898 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 187.2 bits (474), Expect = 2.1e-47
Identity = 125/261 (47.89%), Postives = 149/261 (57.09%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRP--PISYGRLRPPAVYVGGMQPN 136
           FVTFRD +SA RA  DP P+IDGR+ANCN+AS GRPRP  P   G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYGV 196
                   G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 PGSASPAI-------YHYGQLGQTVPGGH---GYGAVH--------GYAMPSPQIVQFGG 255
            G+ SP+        Y+Y Q     P  H    Y   H           +PS        
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

[Close]

BLAST of Carg21898 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 181.8 bits (460), Expect = 9.0e-46
Identity = 121/258 (46.90%), Postives = 145/258 (56.20%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPR--PPISYGRLRPPAVYVGGMQPN 136
           FVTFR+ +SA RA  DP P+IDGR+ANCN+AS GRPR  PP   G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
              Y    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YG----VPGSA------SPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPN--V 255
           YG     P S+      SP  Y Y      VP  H +     Y        +F  P+  V
Sbjct: 182 YGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLV 241

The following BLAST results are available for this feature:

BLAST of Carg21898 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030017.1	1.8e-189	100.00	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022946505.1	9.4e-146	99.22	RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protei...	[more]
KAG6599081.1	9.4e-146	99.22	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023546044.1	3.0e-144	98.05	RNA-binding protein 24-A [Cucurbita pepo subsp. pepo]	[more]
XP_022999744.1	5.1e-144	97.66	RNA-binding protein 24-A [Cucurbita maxima] >XP_022999745.1 RNA-binding protein ...	[more]

BLAST of Carg21898 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	3.6e-31	44.55	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	1.1e-27	40.80	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9BX46	2.4e-27	40.57	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q76LC6	3.1e-27	40.78	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
D3Z4I3	4.1e-27	40.09	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]

BLAST of Carg21898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3W1	4.5e-146	99.22	RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1	[more]
A0A6J1KGG8	2.5e-144	97.66	RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1	[more]
A0A0A0KHA9	5.4e-139	94.96	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV...	[more]
A0A5D3CHF9	9.1e-139	94.96	RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CME8	9.1e-139	94.96	RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1	[more]

BLAST of Carg21898 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76460.1	1.5e-96	65.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.8e-86	64.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.8e-86	64.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	2.1e-47	47.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	9.0e-46	46.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..105 e-value: 9.4E-24 score: 94.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..89 e-value: 4.6E-17 score: 61.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 32..109 score: 17.301737
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 10..120 e-value: 9.0E-25 score: 89.2
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..259
None	No IPR available	PANTHER	PTHR11176:SF32	RNA-BINDING PROTEIN 38-LIKE ISOFORM X1	coord: 1..259
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 32..107 e-value: 1.69188E-45 score: 147.762
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21898-RA	Carg21898-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding