Carg21893 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21893
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	increased DNA methylation 3-like
Location	Carg_Chr05: 8345097 .. 8345709 (+)
RNA-Seq Expression	Carg21893
Synteny	Carg21893

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGAAGGCCATGGCGATCAGACAAGGCTCAAACCATCAGTTATTTTAACTGGAACAGCCAATGAAGGTAGCTCTGGCCCTCCTATTGGTCTTGTTGATATTGGCGTGAGTGAAGGTGCATACCTCTTCCGCGTTGCAATGCCTGGTGTACGAAAGGATCCAAGTAAGCTCCTTGTTTTGCCTTATTTTTCTATCATTCTAACATTTGCATAGATCCCATCCTGATTATACCTCTGAAACGTTAATCCCGGACCGATCCATTTAGAGCGATAACTCGTTGGTCAAATCTCTAGGTAAGGTAAAATTTGAGATCAAAAGGGATGGTAAGGTTCGGATTGAAGGAGTGATGGCAGGTCCAGGCCTCTTAAAAGACTCATCAGCTATGTACGAGATGAAAGTCCAGCAACTGTGTCCTCCCGGACCTCTTACGGTTTCTTTTAAGCTGCCTGGACCAGTCGATCCACGGTTGTCATCTCCTAGTTTCCGGGCTGATGGTATTCTGGAAGTGGTGGTTATGAAGTCTAAAGCACCTCCAACAGTGTCTGATTCCTACCCACCATTGTGATGAGTATGATGGAGAGAGGTATCTGGTTTTGCTGTCTCCTTT

mRNA sequence

ATGGAAATGGAAGGCCATGGCGATCAGACAAGGCTCAAACCATCAGTTATTTTAACTGGAACAGCCAATGAAGGTAGCTCTGGCCCTCCTATTGGTCTTGTTGATATTGGCGTGAGTGAAGGTGCATACCTCTTCCGCGTTGCAATGCCTGGTGTACGAAAGGATCCAAGTAAGGTAAAATTTGAGATCAAAAGGGATGGTAAGGTTCGGATTGAAGGAGTGATGGCAGGTCCAGGCCTCTTAAAAGACTCATCAGCTATGTACGAGATGAAAGTCCAGCAACTGTGTCCTCCCGGACCTCTTACGGTTTCTTTTAAGCTGCCTGGACCAGTCGATCCACGGTTGTCATCTCCTAGTTTCCGGGCTGATGGTATTCTGGAAGTGGTGGTTATGAAGTCTAAAGCACCTCCAACAGTGTCTGATTCCTACCCACCATTGTGATGAGTATGATGGAGAGAGGTATCTGGTTTTGCTGTCTCCTTT

Coding sequence (CDS)

ATGGAAATGGAAGGCCATGGCGATCAGACAAGGCTCAAACCATCAGTTATTTTAACTGGAACAGCCAATGAAGGTAGCTCTGGCCCTCCTATTGGTCTTGTTGATATTGGCGTGAGTGAAGGTGCATACCTCTTCCGCGTTGCAATGCCTGGTGTACGAAAGGATCCAAGTAAGGTAAAATTTGAGATCAAAAGGGATGGTAAGGTTCGGATTGAAGGAGTGATGGCAGGTCCAGGCCTCTTAAAAGACTCATCAGCTATGTACGAGATGAAAGTCCAGCAACTGTGTCCTCCCGGACCTCTTACGGTTTCTTTTAAGCTGCCTGGACCAGTCGATCCACGGTTGTCATCTCCTAGTTTCCGGGCTGATGGTATTCTGGAAGTGGTGGTTATGAAGTCTAAAGCACCTCCAACAGTGTCTGATTCCTACCCACCATTGTGA

Protein sequence

MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

Homology

[Close]

BLAST of Carg21893 vs. NCBI nr
Match: KAG6599085.1 (Increased DNA methylation 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030022.1 Increased DNA methylation 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 5.9e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK
Sbjct: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPPL 147
           RADGILEVVVMKSKAPPTVSDSYPPL
Sbjct: 121 RADGILEVVVMKSKAPPTVSDSYPPL 146

[Close]

BLAST of Carg21893 vs. NCBI nr
Match: XP_023546049.1 (increased DNA methylation 3-like [Cucurbita pepo subsp. pepo] >XP_023546050.1 increased DNA methylation 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.2 bits (744), Expect = 5.0e-75
Identity = 144/146 (98.63%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK
Sbjct: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKRDGKVQIEGVMAGPGLLKESSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPPL 147
           RADGILEVVVMKSKAPPTVSDSYPPL
Sbjct: 121 RADGILEVVVMKSKAPPTVSDSYPPL 146

[Close]

BLAST of Carg21893 vs. NCBI nr
Match: XP_022945989.1 (increased DNA methylation 3-like [Cucurbita moschata] >XP_022945990.1 increased DNA methylation 3-like [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 143/146 (97.95%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK
Sbjct: 1   MDMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKRDGKVQIEGVMAGPGLLKESSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPPL 147
           RADGILEVVVMKSKAPPTVSDSYPPL
Sbjct: 121 RADGILEVVVMKSKAPPTVSDSYPPL 146

[Close]

BLAST of Carg21893 vs. NCBI nr
Match: XP_022999775.1 (increased DNA methylation 3-like [Cucurbita maxima] >XP_022999776.1 increased DNA methylation 3-like [Cucurbita maxima])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 142/146 (97.26%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK
Sbjct: 1   MDMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGPLT+SFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKRDGKVQIEGVMAGPGLLKESSAMYEMKVQQLCPPGPLTISFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPPL 147
           RADGILEVVVMKSKAPPTVSDSYPPL
Sbjct: 121 RADGILEVVVMKSKAPPTVSDSYPPL 146

[Close]

BLAST of Carg21893 vs. NCBI nr
Match: XP_022951227.1 (increased DNA methylation 3-like [Cucurbita moschata] >XP_022951228.1 increased DNA methylation 3-like [Cucurbita moschata] >XP_022951229.1 increased DNA methylation 3-like [Cucurbita moschata] >XP_022951230.1 increased DNA methylation 3-like [Cucurbita moschata] >XP_023538561.1 increased DNA methylation 3-like [Cucurbita pepo subsp. pepo] >XP_023538562.1 increased DNA methylation 3-like [Cucurbita pepo subsp. pepo] >XP_023538563.1 increased DNA methylation 3-like [Cucurbita pepo subsp. pepo] >XP_023538564.1 increased DNA methylation 3-like [Cucurbita pepo subsp. pepo] >XP_023538565.1 increased DNA methylation 3-like [Cucurbita pepo subsp. pepo] >KAG6585797.1 Increased DNA methylation 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 127/145 (87.59%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           M MEGHGD  +LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVK
Sbjct: 1   MVMEGHGDHMKLKPSVILTGTAKEGSSGPPIGLVDIGVSEGAYLFRVALPGVRKDRSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIK DG+V IEGVM GPGLLKDSSAMY+MKVQQLCPPG  TVSFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKSDGRVHIEGVMTGPGLLKDSSAMYQMKVQQLCPPGSFTVSFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPP 146
           R DGILEVVVMKS+APPTV+DS+PP
Sbjct: 121 RPDGILEVVVMKSRAPPTVADSHPP 145

[Close]

BLAST of Carg21893 vs. ExPASy Swiss-Prot
Match: Q9SYQ0 (Increased DNA methylation 3 OS=Arabidopsis thaliana OX=3702 GN=IDM3 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-30
Identity = 64/123 (52.03%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 13  KPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIE 72
           +PSV+ TGTA++ + G  +G+VDIGV++ AY F+VA+PGVRKD  +   EI+ DGKV +E
Sbjct: 339 EPSVVTTGTASKETLGSSVGVVDIGVNKVAYFFQVALPGVRKDYGEFSCEIESDGKVILE 398

Query: 73  G-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRADGILEVVVM 132
           G    G   +K  S ++EM +++LCPPGP  + F LPGPVDPRL SP+FR+DGI E V++
Sbjct: 399 GSTTRGEKNIKRHSRVFEMNIRKLCPPGPFKLCFNLPGPVDPRLFSPNFRSDGIFEGVII 458

Query: 133 KSK 135
           + K
Sbjct: 459 RHK 461

[Close]

BLAST of Carg21893 vs. ExPASy Swiss-Prot
Match: Q8RWL4 (Increased DNA methylation 2 OS=Arabidopsis thaliana OX=3702 GN=IDM2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 5   GHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIK 64
           G       KP V      +E   G  +GL+DIG  + AYLFRV++PGV++D      E++
Sbjct: 219 GEESDVAAKPEV-----KSEAHGGLMVGLMDIGECDDAYLFRVSLPGVKRDERYFSCEVE 278

Query: 65  RDGKVRIEGV-MAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRAD 124
            +GKV + GV   G   +K  S ++EM+ + LCPPG  +VSF+LPGPV P   S +F  D
Sbjct: 279 DNGKVLVRGVTTTGGKRVKRYSHVFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTD 338

Query: 125 GILEVVVMKSKAPPTV 140
           GILE VVMK+    TV
Sbjct: 339 GILEGVVMKNLQKQTV 349

[Close]

BLAST of Carg21893 vs. ExPASy Swiss-Prot
Match: Q84K79 (Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana OX=3702 GN=ACD22.3 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-21
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 10  TRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKV 69
           ++ K  V LTG+A  G  G  IGLVDI  SE +Y FRVA+PGV +D  +   EI+ DGK+
Sbjct: 78  SQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALPGVSRDEKEFSCEIEPDGKI 137

Query: 70  RIEG-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRADGILEV 129
            I+G    G   +   + +++M  Q LCPPG  T++F+LPGPV     + +F +DG+LE 
Sbjct: 138 MIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLPGPVSNEEFNGNFGSDGVLEG 197

Query: 130 VVMK 133
           VV K
Sbjct: 198 VVKK 201

[Close]

BLAST of Carg21893 vs. ExPASy TrEMBL
Match: A0A6J1G2H5 (increased DNA methylation 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450210 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 143/146 (97.95%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK
Sbjct: 1   MDMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKRDGKVQIEGVMAGPGLLKESSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPPL 147
           RADGILEVVVMKSKAPPTVSDSYPPL
Sbjct: 121 RADGILEVVVMKSKAPPTVSDSYPPL 146

[Close]

BLAST of Carg21893 vs. ExPASy TrEMBL
Match: A0A6J1KGJ6 (increased DNA methylation 3-like OS=Cucurbita maxima OX=3661 GN=LOC111494023 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 142/146 (97.26%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK
Sbjct: 1   MDMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGPLT+SFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKRDGKVQIEGVMAGPGLLKESSAMYEMKVQQLCPPGPLTISFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPPL 147
           RADGILEVVVMKSKAPPTVSDSYPPL
Sbjct: 121 RADGILEVVVMKSKAPPTVSDSYPPL 146

[Close]

BLAST of Carg21893 vs. ExPASy TrEMBL
Match: A0A6J1GI33 (increased DNA methylation 3-like OS=Cucurbita moschata OX=3662 GN=LOC111454130 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 127/145 (87.59%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           M MEGHGD  +LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVK
Sbjct: 1   MVMEGHGDHMKLKPSVILTGTAKEGSSGPPIGLVDIGVSEGAYLFRVALPGVRKDRSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIK DG+V IEGVM GPGLLKDSSAMY+MKVQQLCPPG  TVSFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKSDGRVHIEGVMTGPGLLKDSSAMYQMKVQQLCPPGSFTVSFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPP 146
           R DGILEVVVMKS+APPTV+DS+PP
Sbjct: 121 RPDGILEVVVMKSRAPPTVADSHPP 145

[Close]

BLAST of Carg21893 vs. ExPASy TrEMBL
Match: A0A6J1KJX1 (increased DNA methylation 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496397 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.0e-65
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 1   MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVK 60
           M MEGHGD  +LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVK
Sbjct: 1   MVMEGHGDHMKLKPSVILTGTAKEGSSGPPIGLVDIGVSEGAYLFRVALPGVRKDRSKVK 60

Query: 61  FEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSF 120
           FEIK DG+V IEGVM GPGLLKDSSAMY+MKVQQLCPPG  TVSFKLPGPVDPRLSSPSF
Sbjct: 61  FEIKSDGRVHIEGVMTGPGLLKDSSAMYQMKVQQLCPPGSFTVSFKLPGPVDPRLSSPSF 120

Query: 121 RADGILEVVVMKSKAPPTVSDSYPP 146
           R DGILEVVVMKS+APPTV+DS PP
Sbjct: 121 RPDGILEVVVMKSRAPPTVADSLPP 145

[Close]

BLAST of Carg21893 vs. ExPASy TrEMBL
Match: A0A1S3CMV5 (increased DNA methylation 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502607 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.9e-65
Identity = 127/144 (88.19%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 3   MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFE 62
           MEG+GDQT LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVKFE
Sbjct: 1   MEGNGDQTMLKPSVILTGTAKEGSSGPPIGLVDIGVSEGAYLFRVALPGVRKDRSKVKFE 60

Query: 63  IKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRA 122
           IK DGKV+IEGVM+GPG LK+SSAMY+MKVQQLCPPGP TVSFKLPGPVDPRLSSPSFR 
Sbjct: 61  IKSDGKVQIEGVMSGPGFLKESSAMYQMKVQQLCPPGPFTVSFKLPGPVDPRLSSPSFRP 120

Query: 123 DGILEVVVMKSKAPPTVSDSYPPL 147
           DGILEVVVMKS+A PTV+DS PPL
Sbjct: 121 DGILEVVVMKSRAQPTVADSQPPL 144

[Close]

BLAST of Carg21893 vs. TAIR 10
Match: AT1G76440.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 4.4e-37
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 16  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVM 75
           V  TGTA  GS GPPIGLVDIGVSE AY+FRV++PG+ K+  K+K EI+R+G+V I+GV+
Sbjct: 19  VFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQDKIKCEIQREGRVCIQGVI 78

Query: 76  AGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRADGILEVVVMK 133
               +  D+  +Y M+VQQLCPPGP +++F LPG VDPRL SP+FR+DGI EVVV+K
Sbjct: 79  PEIAIPSDTGCLYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVVK 135

[Close]

BLAST of Carg21893 vs. TAIR 10
Match: AT1G76440.2 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 4.4e-37
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 16  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVM 75
           V  TGTA  GS GPPIGLVDIGVSE AY+FRV++PG+ K+  K+K EI+R+G+V I+GV+
Sbjct: 19  VFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQDKIKCEIQREGRVCIQGVI 78

Query: 76  AGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRADGILEVVVMK 133
               +  D+  +Y M+VQQLCPPGP +++F LPG VDPRL SP+FR+DGI EVVV+K
Sbjct: 79  PEIAIPSDTGCLYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVVK 135

[Close]

BLAST of Carg21893 vs. TAIR 10
Match: AT1G76440.3 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 4.4e-37
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 16  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVM 75
           V  TGTA  GS GPPIGLVDIGVSE AY+FRV++PG+ K+  K+K EI+R+G+V I+GV+
Sbjct: 19  VFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQDKIKCEIQREGRVCIQGVI 78

Query: 76  AGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRADGILEVVVMK 133
               +  D+  +Y M+VQQLCPPGP +++F LPG VDPRL SP+FR+DGI EVVV+K
Sbjct: 79  PEIAIPSDTGCLYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVVK 135

[Close]

BLAST of Carg21893 vs. TAIR 10
Match: AT1G20870.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-31
Identity = 64/123 (52.03%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 13  KPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIE 72
           +PSV+ TGTA++ + G  +G+VDIGV++ AY F+VA+PGVRKD  +   EI+ DGKV +E
Sbjct: 339 EPSVVTTGTASKETLGSSVGVVDIGVNKVAYFFQVALPGVRKDYGEFSCEIESDGKVILE 398

Query: 73  G-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRADGILEVVVM 132
           G    G   +K  S ++EM +++LCPPGP  + F LPGPVDPRL SP+FR+DGI E V++
Sbjct: 399 GSTTRGEKNIKRHSRVFEMNIRKLCPPGPFKLCFNLPGPVDPRLFSPNFRSDGIFEGVII 458

Query: 133 KSK 135
           + K
Sbjct: 459 RHK 461

[Close]

BLAST of Carg21893 vs. TAIR 10
Match: AT1G54840.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 5   GHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIK 64
           G       KP V      +E   G  +GL+DIG  + AYLFRV++PGV++D      E++
Sbjct: 219 GEESDVAAKPEV-----KSEAHGGLMVGLMDIGECDDAYLFRVSLPGVKRDERYFSCEVE 278

Query: 65  RDGKVRIEGV-MAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRLSSPSFRAD 124
            +GKV + GV   G   +K  S ++EM+ + LCPPG  +VSF+LPGPV P   S +F  D
Sbjct: 279 DNGKVLVRGVTTTGGKRVKRYSHVFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTD 338

Query: 125 GILEVVVMKSKAPPTV 140
           GILE VVMK+    TV
Sbjct: 339 GILEGVVMKNLQKQTV 349

The following BLAST results are available for this feature:

BLAST of Carg21893 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599085.1	5.9e-76	100.00	Increased DNA methylation 3, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_023546049.1	5.0e-75	98.63	increased DNA methylation 3-like [Cucurbita pepo subsp. pepo] >XP_023546050.1 in...	[more]
XP_022945989.1	1.1e-74	97.95	increased DNA methylation 3-like [Cucurbita moschata] >XP_022945990.1 increased ...	[more]
XP_022999775.1	1.4e-74	97.26	increased DNA methylation 3-like [Cucurbita maxima] >XP_022999776.1 increased DN...	[more]
XP_022951227.1	2.7e-65	87.59	increased DNA methylation 3-like [Cucurbita moschata] >XP_022951228.1 increased ...	[more]

BLAST of Carg21893 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYQ0	3.9e-30	52.03	Increased DNA methylation 3 OS=Arabidopsis thaliana OX=3702 GN=IDM3 PE=1 SV=1	[more]
Q8RWL4	1.5e-21	43.38	Increased DNA methylation 2 OS=Arabidopsis thaliana OX=3702 GN=IDM2 PE=1 SV=1	[more]
Q84K79	1.9e-21	44.35	Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg21893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2H5	5.4e-75	97.95	increased DNA methylation 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450210 P...	[more]
A0A6J1KGJ6	7.0e-75	97.26	increased DNA methylation 3-like OS=Cucurbita maxima OX=3661 GN=LOC111494023 PE=...	[more]
A0A6J1GI33	1.3e-65	87.59	increased DNA methylation 3-like OS=Cucurbita moschata OX=3662 GN=LOC111454130 P...	[more]
A0A6J1KJX1	3.0e-65	87.59	increased DNA methylation 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496397 PE=...	[more]
A0A1S3CMV5	3.9e-65	88.19	increased DNA methylation 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502607 P...	[more]

BLAST of Carg21893 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76440.1	4.4e-37	60.68	HSP20-like chaperones superfamily protein	[more]
AT1G76440.2	4.4e-37	60.68	HSP20-like chaperones superfamily protein	[more]
AT1G76440.3	4.4e-37	60.68	HSP20-like chaperones superfamily protein	[more]
AT1G20870.1	2.8e-31	52.03	HSP20-like chaperones superfamily protein	[more]
AT1G54840.1	1.0e-22	43.38	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 33..142 e-value: 1.8E-10 score: 42.6
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 32..136
None	No IPR available	PANTHER	PTHR34661:SF2	INCREASED DNA METHYLATION 3-LIKE	coord: 1..138
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 35..132 e-value: 1.18267E-8 score: 47.5489
IPR039321	Increased DNA methylation 2/3-like	PANTHER	PTHR34661	INCREASED DNA METHYLATION 3	coord: 1..138
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 22..146 score: 11.43531

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21893-RA	Carg21893-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901537	positive regulation of DNA demethylation
cellular_component	GO:0005634	nucleus