Carg21790 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21790
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1
LocationCarg_Chr09: 1288734 .. 1290639 (+)
RNA-Seq ExpressionCarg21790
SyntenyCarg21790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTTTTTCTTTGCTAAAAATTTTCGCTCCCCTTGTTCAATTCGTTCTCGATTCCACTCGTTACAAGCTTCTCCGTTTGTGGCGCCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGGGCTGGCGTCGGATTCGGTATGATATCTTCATAAATATTGAGCTTGTTTTGTTTGATATATTTTGTATATTATTATCTTTTCTTTGTTTTTTTTAACTGATTATTGCTGTTATTTTCTTGATTGGAGGTTTTGGTATCGGTTGTGGATTCGGCATCGGATGGGGTTTCGGAGGTATGTGATGTCTTACCCTAGTTATTTTCGATCGTTTTTCTCTCTTGCTTAGTTCTTTCATTTACCTGTTGTACGTCGCGAGCTTGTTCCGGAATTTCTAAGATGATTTCGGGCTTTTTGTTTATTTGCGTTCTCTCTAATTATGTTGGATTTGATATGCTAGCTGGGCGAAGTTAGCTGAAAAGAGTTTCTGGAATATTATGAAATGAATGCTACAGAACCCTGAGGCTTTTGAATTATAAATTGAAAAATATTTGGATCAGAAAGGGGGATAAATTGAAAAACTATTATTCTTCAATTGGGATCAGAAAGGGGGATAATATGTAGTTTTTTTTCCTCTGAAAATGATACGAGTTGTTCTTGTTAAGCTACGGTTGGTGTCTTGGCGATGTCTGGCTCTCTATTATTTTGAAATGACTGGCAGGCCGAGGTATGCCAATTTTAATAGGTTATTTACTTGGAATAAGTAGAGCCTTTTCTTTTGGCAAGTTTGGTGAAGATGGAGTAACTTTGTGATTTGTAGAGGCAGAACAATGAGATGAATTGGTTTGTGGTGATCTATTGACATCGTTGATCTTAAGATATCTACATCTAGCCACAGATACCACTTGGAATTCCTGTGTGACTCCCAACAGCGAGTAGTTCATGTATTTGTTTGTGAAATCTAATAGTTTCATTACTCTAAAAGAAATATGCATGTTGGGCAATATTCTAGTTCAATGAGAGCTCACAACAGAAGTTGTGGGGTATCTTGTTTTAACTCGTGACGGACTAATAGTTTTGGGTTCTTCCCATGACCTGTATTAACTACTAGTTCAATCCATGATGGTTCATCTTATGAGTTATTTAAAGGACTCAAACCATCCTTCCGCAGGTTAATTGAAAGGGTGTAAGCTGGATACCTATAGACAAGAATCTTGACGGGCTAGAAACTAAGTTCTGTGCCTTTGTTGCAACTCTCGTTTTTGCAGTTTAGGATATTAGAACAGTCTGGAATCTTAGGTTGGTATGGATTTAGTTTAAGGAACGAGAGATAAAGTAAATTGCAATGGAAGATTACGTTTTCACGTTTAGACTATCAGATTTCTGTTTGGAGTCGTTCAAAAGTTATGATTTCTGCTTAGTGTACTGGGGTTTAATTTCTGCATAGGAACCTTGAAAGTTAAGGTCCTGCACATAACTTTTAGATCCAGTTGTAGATTCCATTATTTCTCTTCAAAATTTCCAGGCACGTATTATTCTTTAACGTGGGAGTTGTAGTTTTTCTGCAATTACGTGCCCCACCTGAATGAAGATGTTTATTTTGCAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTAACAAACTAACATGCTCTACGTACAAATATTTTTCCAAATAGACATTCATCTGATTGCGTAGTTATTTATTTTGTGATTCTTTTCTGTAGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTACGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAACTTGACAACAAGGATCAAAATCAAAGTTATGACTGCAAGGACTCAAAAGACTTGTCCAGAAATTCCAGAAAAGCTTGA

mRNA sequence

TTCTTTTTTTCTTTGCTAAAAATTTTCGCTCCCCTTGTTCAATTCGTTCTCGATTCCACTCGTTACAAGCTTCTCCGTTTGTGGCGCCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGGGCTGGCGTCGGATTCGGTTTTGGTATCGGTTGTGGATTCGGCATCGGATGGGGTTTCGGAGTTTTTCTGCAATTACGTGCCCCACCTGAATGAAGATGTTTATTTTGCAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTACGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAACTTGACAACAAGGATCAAAATCAAAGTTATGACTGCAAGGACTCAAAAGACTTGTCCAGAAATTCCAGAAAAGCTTGA

Coding sequence (CDS)

ATGGGGCTGGCGTCGGATTCGGTTTTGGTATCGGTTGTGGATTCGGCATCGGATGGGGTTTCGGAGTTTTTCTGCAATTACGTGCCCCACCTGAATGAAGATGTTTATTTTGCAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTACGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAACTTGACAACAAGGATCAAAATCAAAGTTATGACTGCAAGGACTCAAAAGACTTGTCCAGAAATTCCAGAAAAGCTTGA

Protein sequence

MGLASDSVLVSVVDSASDGVSEFFCNYVPHLNEDVYFAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKDSKDLSRNSRKA
Homology
BLAST of Carg21790 vs. NCBI nr
Match: KAG7024290.1 (hypothetical protein SDJN02_13104 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 9.7e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MGLASDSVLVSVVDSASDGVSEFFCNYVPHLNEDVYFAGMPLNFLGLGAGGGCGVGLGLG 60
           MGLASDSVLVSVVDSASDGVSEFFCNYVPHLNEDVYFAGMPLNFLGLGAGGGCGVGLGLG
Sbjct: 1   MGLASDSVLVSVVDSASDGVSEFFCNYVPHLNEDVYFAGMPLNFLGLGAGGGCGVGLGLG 60

Query: 61  WGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKDSKDLSRNSRKA 108
           WGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKDSKDLSRNSRKA
Sbjct: 61  WGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKDSKDLSRNSRKA 107

BLAST of Carg21790 vs. NCBI nr
Match: XP_022937244.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937245.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937246.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_023535926.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >KAG6591411.1 hypothetical protein SDJN03_13757, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 8.8e-29
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYD KD
Sbjct: 27  FGGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDSKD 86

Query: 97  SKDLSRNSRKA 108
           SKDLSRNSRKA
Sbjct: 87  SKDLSRNSRKA 97

BLAST of Carg21790 vs. NCBI nr
Match: XP_022977146.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977147.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977148.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977149.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQ+YD KD
Sbjct: 27  FGGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQTYDSKD 86

Query: 97  SKDLSRNSRKA 108
           SKDLSRNSRKA
Sbjct: 87  SKDLSRNSRKA 97

BLAST of Carg21790 vs. NCBI nr
Match: XP_004141282.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGLGAGGGCGVGLGLGWGFGTA+GSKYRSSRMIFQGME DNKDQNQSYD KD
Sbjct: 27  FGGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKD 86

Query: 97  SKDLSRNSRK 107
           SKDLSRNSRK
Sbjct: 87  SKDLSRNSRK 96

BLAST of Carg21790 vs. NCBI nr
Match: XP_022937247.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita moschata] >XP_023535927.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.6 bits (322), Expect = 3.1e-26
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGL  GGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYD KD
Sbjct: 27  FGGMPLNFLGL--GGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDSKD 86

Query: 97  SKDLSRNSRKA 108
           SKDLSRNSRKA
Sbjct: 87  SKDLSRNSRKA 95

BLAST of Carg21790 vs. ExPASy Swiss-Prot
Match: Q8VY77 (Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD5 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-16
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMP+N LG+GAGGGCGVGLGLGWGFGTA+GS YRSSR+ FQG+EL+  D+ +      
Sbjct: 27  FGGMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKREEVVANM 86

Query: 97  SKD 100
           SK+
Sbjct: 87  SKN 89

BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A6J1F9U6 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443591 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYD KD
Sbjct: 27  FGGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDSKD 86

Query: 97  SKDLSRNSRKA 108
           SKDLSRNSRKA
Sbjct: 87  SKDLSRNSRKA 97

BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A6J1IHM9 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477300 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.5e-29
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQ+YD KD
Sbjct: 27  FGGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQTYDSKD 86

Query: 97  SKDLSRNSRKA 108
           SKDLSRNSRKA
Sbjct: 87  SKDLSRNSRKA 97

BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A0A0L0F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGLGAGGGCGVGLGLGWGFGTA+GSKYRSSRMIFQGME DNKDQNQSYD KD
Sbjct: 27  FGGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKD 86

Query: 97  SKDLSRNSRK 107
           SKDLSRNSRK
Sbjct: 87  SKDLSRNSRK 96

BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A6J1FAN4 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443591 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGL  GGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYD KD
Sbjct: 27  FGGMPLNFLGL--GGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDSKD 86

Query: 97  SKDLSRNSRKA 108
           SKDLSRNSRKA
Sbjct: 87  SKDLSRNSRKA 95

BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A1S3BVF8 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMPLNFLGLGAGGGCGVGLGLGWGFGTA+GSKYRSSRMIFQGME D+KDQNQSYD KD
Sbjct: 27  FGGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKD 86

Query: 97  SKDLSRNSRK 107
           SKD SRNSRK
Sbjct: 87  SKDSSRNSRK 96

BLAST of Carg21790 vs. TAIR 10
Match: AT1G27695.1 (glycine-rich protein )

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-17
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMP+N LG+GAGGGCGVGLGLGWGFGTA+GS YRSSR+ FQG+EL+  D+ +      
Sbjct: 27  FGGMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKREEVVANM 86

Query: 97  SKD 100
           SK+
Sbjct: 87  SKN 89

BLAST of Carg21790 vs. TAIR 10
Match: AT1G27695.2 (glycine-rich protein )

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-17
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 37  FAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKD 96
           F GMP+N LG+GAGGGCGVGLGLGWGFGTA+GS YRSSR+ FQG+EL+  D+ +      
Sbjct: 27  FGGMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKREEVVANM 86

Query: 97  SKD 100
           SK+
Sbjct: 87  SKN 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024290.19.7e-52100.00hypothetical protein SDJN02_13104 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022937244.18.8e-2997.18protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita mosch... [more]
XP_022977146.12.0e-2895.77protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxim... [more]
XP_004141282.12.8e-2794.29protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus... [more]
XP_022937247.13.1e-2694.37protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita mosch... [more]
Match NameE-valueIdentityDescription
Q8VY775.2e-1665.08Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=... [more]
Match NameE-valueIdentityDescription
A0A6J1F9U64.3e-2997.18protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita mos... [more]
A0A6J1IHM99.5e-2995.77protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita max... [more]
A0A0A0L0F81.4e-2794.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1[more]
A0A6J1FAN41.5e-2694.37protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucurbita mos... [more]
A0A1S3BVF82.6e-2691.43protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo ... [more]
Match NameE-valueIdentityDescription
AT1G27695.13.7e-1765.08glycine-rich protein [more]
AT1G27695.23.7e-1765.08glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..107
NoneNo IPR availablePANTHERPTHR19359CYTOCHROME B5coord: 25..99
NoneNo IPR availablePANTHERPTHR19359:SF115PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 5, CHLOROPLASTICcoord: 25..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21790-RACarg21790-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding