Carg21790 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTCTTTTTTTCTTTGCTAAAAATTTTCGCTCCCCTTGTTCAATTCGTTCTCGATTCCACTCGTTACAAGCTTCTCCGTTTGTGGCGCCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGGGCTGGCGTCGGATTCGGTATGATATCTTCATAAATATTGAGCTTGTTTTGTTTGATATATTTTGTATATTATTATCTTTTCTTTGTTTTTTTTAACTGATTATTGCTGTTATTTTCTTGATTGGAGGTTTTGGTATCGGTTGTGGATTCGGCATCGGATGGGGTTTCGGAGGTATGTGATGTCTTACCCTAGTTATTTTCGATCGTTTTTCTCTCTTGCTTAGTTCTTTCATTTACCTGTTGTACGTCGCGAGCTTGTTCCGGAATTTCTAAGATGATTTCGGGCTTTTTGTTTATTTGCGTTCTCTCTAATTATGTTGGATTTGATATGCTAGCTGGGCGAAGTTAGCTGAAAAGAGTTTCTGGAATATTATGAAATGAATGCTACAGAACCCTGAGGCTTTTGAATTATAAATTGAAAAATATTTGGATCAGAAAGGGGGATAAATTGAAAAACTATTATTCTTCAATTGGGATCAGAAAGGGGGATAATATGTAGTTTTTTTTCCTCTGAAAATGATACGAGTTGTTCTTGTTAAGCTACGGTTGGTGTCTTGGCGATGTCTGGCTCTCTATTATTTTGAAATGACTGGCAGGCCGAGGTATGCCAATTTTAATAGGTTATTTACTTGGAATAAGTAGAGCCTTTTCTTTTGGCAAGTTTGGTGAAGATGGAGTAACTTTGTGATTTGTAGAGGCAGAACAATGAGATGAATTGGTTTGTGGTGATCTATTGACATCGTTGATCTTAAGATATCTACATCTAGCCACAGATACCACTTGGAATTCCTGTGTGACTCCCAACAGCGAGTAGTTCATGTATTTGTTTGTGAAATCTAATAGTTTCATTACTCTAAAAGAAATATGCATGTTGGGCAATATTCTAGTTCAATGAGAGCTCACAACAGAAGTTGTGGGGTATCTTGTTTTAACTCGTGACGGACTAATAGTTTTGGGTTCTTCCCATGACCTGTATTAACTACTAGTTCAATCCATGATGGTTCATCTTATGAGTTATTTAAAGGACTCAAACCATCCTTCCGCAGGTTAATTGAAAGGGTGTAAGCTGGATACCTATAGACAAGAATCTTGACGGGCTAGAAACTAAGTTCTGTGCCTTTGTTGCAACTCTCGTTTTTGCAGTTTAGGATATTAGAACAGTCTGGAATCTTAGGTTGGTATGGATTTAGTTTAAGGAACGAGAGATAAAGTAAATTGCAATGGAAGATTACGTTTTCACGTTTAGACTATCAGATTTCTGTTTGGAGTCGTTCAAAAGTTATGATTTCTGCTTAGTGTACTGGGGTTTAATTTCTGCATAGGAACCTTGAAAGTTAAGGTCCTGCACATAACTTTTAGATCCAGTTGTAGATTCCATTATTTCTCTTCAAAATTTCCAGGCACGTATTATTCTTTAACGTGGGAGTTGTAGTTTTTCTGCAATTACGTGCCCCACCTGAATGAAGATGTTTATTTTGCAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTAACAAACTAACATGCTCTACGTACAAATATTTTTCCAAATAGACATTCATCTGATTGCGTAGTTATTTATTTTGTGATTCTTTTCTGTAGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTACGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAACTTGACAACAAGGATCAAAATCAAAGTTATGACTGCAAGGACTCAAAAGACTTGTCCAGAAATTCCAGAAAAGCTTGA TTCTTTTTTTCTTTGCTAAAAATTTTCGCTCCCCTTGTTCAATTCGTTCTCGATTCCACTCGTTACAAGCTTCTCCGTTTGTGGCGCCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGGGCTGGCGTCGGATTCGGTTTTGGTATCGGTTGTGGATTCGGCATCGGATGGGGTTTCGGAGTTTTTCTGCAATTACGTGCCCCACCTGAATGAAGATGTTTATTTTGCAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTACGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAACTTGACAACAAGGATCAAAATCAAAGTTATGACTGCAAGGACTCAAAAGACTTGTCCAGAAATTCCAGAAAAGCTTGA ATGGGGCTGGCGTCGGATTCGGTTTTGGTATCGGTTGTGGATTCGGCATCGGATGGGGTTTCGGAGTTTTTCTGCAATTACGTGCCCCACCTGAATGAAGATGTTTATTTTGCAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTACGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAACTTGACAACAAGGATCAAAATCAAAGTTATGACTGCAAGGACTCAAAAGACTTGTCCAGAAATTCCAGAAAAGCTTGA MGLASDSVLVSVVDSASDGVSEFFCNYVPHLNEDVYFAGMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKDSKDLSRNSRKA Homology
BLAST of Carg21790 vs. NCBI nr
Match: KAG7024290.1 (hypothetical protein SDJN02_13104 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 213.4 bits (542), Expect = 9.7e-52 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Carg21790 vs. NCBI nr
Match: XP_022937244.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937245.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937246.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_023535926.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >KAG6591411.1 hypothetical protein SDJN03_13757, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 137.1 bits (344), Expect = 8.8e-29 Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0
BLAST of Carg21790 vs. NCBI nr
Match: XP_022977146.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977147.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977148.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977149.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28 Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0
BLAST of Carg21790 vs. NCBI nr
Match: XP_004141282.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27 Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of Carg21790 vs. NCBI nr
Match: XP_022937247.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita moschata] >XP_023535927.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 128.6 bits (322), Expect = 3.1e-26 Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0
BLAST of Carg21790 vs. ExPASy Swiss-Prot
Match: Q8VY77 (Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD5 PE=1 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 5.2e-16 Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0
BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A6J1F9U6 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443591 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29 Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0
BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A6J1IHM9 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477300 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 9.5e-29 Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0
BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A0A0L0F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27 Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A6J1FAN4 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443591 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26 Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0
BLAST of Carg21790 vs. ExPASy TrEMBL
Match: A0A1S3BVF8 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26 Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0
BLAST of Carg21790 vs. TAIR 10
Match: AT1G27695.1 (glycine-rich protein ) HSP 1 Score: 85.1 bits (209), Expect = 3.7e-17 Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0
BLAST of Carg21790 vs. TAIR 10
Match: AT1G27695.2 (glycine-rich protein ) HSP 1 Score: 85.1 bits (209), Expect = 3.7e-17 Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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