Carg21788 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21788
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	4F5 domain-containing protein/zf-met2 domain-containing protein
Location	Carg_Chr09: 1292249 .. 1292933 (+)
RNA-Seq Expression	Carg21788
Synteny	Carg21788

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTGTGCTATCATCACTGGCTCCCATTTTACCCGACGGCGAAGAAACTGCTATATATATGCACAGAGTTCTTCTCTGAGGCGACGCGATCGATTCTAAATTTGAAACCCTCCCTCTTGCGAAATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAACAAAAGTCCTCCTCAAGAGGTAATTAAGCTGCCACCCAATTCTTTCTGATTGATGATTTCCCTCTTAAGAGTTAGTTGATTATGATTGTAATAATTTTCACAGGAAGTCAGCTGGAAAAGAACAAGAAAGCCATGACAATACAGGTAAAGTTCTGAGTCTCAATTATGTATCTAATTTGGTTCCTCGAGACTTAGAGATAAAACACAAAACCCATTAGCAGCTCCATGTGAGATTGAAATGGAAGTGTTAATGAAAGTGGGTGGTTGTGAATGGTTACAGTGCAAGGTATGCATGCAGACATTTATATGCACGACGACGGAGGTGAAGTGCAGGGAGCATGCAGAAGCAAGGCACCCAAAATCTGATGTTTACGCCTGTTTTCCCCATCTTAAGAATCCCAACTCCTCCTAGAGGAGGCTGCCTGTAACAACATATGCTTCTGCTAAAATATACTGATAAAAATCCAACATTTCTTTCGATAAACATAATTTTCACAAATGATT

mRNA sequence

TATTTGTGCTATCATCACTGGCTCCCATTTTACCCGACGGCGAAGAAACTGCTATATATATGCACAGAGTTCTTCTCTGAGGCGACGCGATCGATTCTAAATTTGAAACCCTCCCTCTTGCGAAATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAACAAAAGTCCTCCTCAAGAGGAAGTCAGCTGGAAAAGAACAAGAAAGCCATGACAATACAGTGCAAGGTATGCATGCAGACATTTATATGCACGACGACGGAGGTGAAGTGCAGGGAGCATGCAGAAGCAAGGCACCCAAAATCTGATGTTTACGCCTGTTTTCCCCATCTTAAGAATCCCAACTCCTCCTAGAGGAGGCTGCCTGTAACAACATATGCTTCTGCTAAAATATACTGATAAAAATCCAACATTTCTTTCGATAAACATAATTTTCACAAATGATT

Coding sequence (CDS)

ATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAACAAAAGTCCTCCTCAAGAGGAAGTCAGCTGGAAAAGAACAAGAAAGCCATGACAATACAGTGCAAGGTATGCATGCAGACATTTATATGCACGACGACGGAGGTGAAGTGCAGGGAGCATGCAGAAGCAAGGCACCCAAAATCTGATGTTTACGCCTGTTTTCCCCATCTTAAGAATCCCAACTCCTCCTAG

Protein sequence

MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSDVYACFPHLKNPNSS

Homology

[Close]

BLAST of Carg21788 vs. NCBI nr
Match: XP_022937248.1 (uncharacterized protein At2g23090-like [Cucurbita moschata] >KAG6591413.1 hypothetical protein SDJN03_13759, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024292.1 hypothetical protein SDJN02_13106 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKNPNSS 83
          EARHPKSDVYACFPHLKNPNSS
Sbjct: 61 EARHPKSDVYACFPHLKNPNSS 82

[Close]

BLAST of Carg21788 vs. NCBI nr
Match: XP_023535928.1 (uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEK KSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKLKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKNPNSS 83
          EARHPKSDVYACFPHLKNPNSS
Sbjct: 61 EARHPKSDVYACFPHLKNPNSS 82

[Close]

BLAST of Carg21788 vs. NCBI nr
Match: XP_022977152.1 (uncharacterized protein At2g23090-like [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKNPNSS 83
          EARHPKS VYACFPHLKNPNSS
Sbjct: 61 EARHPKSGVYACFPHLKNPNSS 82

[Close]

BLAST of Carg21788 vs. NCBI nr
Match: XP_038897649.1 (uncharacterized protein At2g23090-like [Benincasa hispida])

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-31
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMARE+NLEKQK SSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMARERNLEKQK-SSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLK 78
          EARHPKSDVYACFPHLK
Sbjct: 61 EARHPKSDVYACFPHLK 76

[Close]

BLAST of Carg21788 vs. NCBI nr
Match: XP_027347192.1 (uncharacterized protein At2g23090 [Abrus precatorius])

HSP 1 Score: 144.8 bits (364), Expect = 3.2e-31
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMARE+NLEKQK+ S+GSQLE NKKAMTIQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNGQKSKMARERNLEKQKAGSKGSQLESNKKAMTIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLK 78
          EA+HPKSDVYACFPHLK
Sbjct: 61 EAKHPKSDVYACFPHLK 77

[Close]

BLAST of Carg21788 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-29
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QKS MAR KNLEK K++ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLK 78
          EA+HPK+DV ACFPHLK
Sbjct: 61 EAKHPKADVVACFPHLK 77

[Close]

BLAST of Carg21788 vs. ExPASy TrEMBL
Match: A0A6J1FFL3 (uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC111443593 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKNPNSS 83
          EARHPKSDVYACFPHLKNPNSS
Sbjct: 61 EARHPKSDVYACFPHLKNPNSS 82

[Close]

BLAST of Carg21788 vs. ExPASy TrEMBL
Match: A0A6J1IHN4 (uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC111477302 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKNPNSS 83
          EARHPKS VYACFPHLKNPNSS
Sbjct: 61 EARHPKSGVYACFPHLKNPNSS 82

[Close]

BLAST of Carg21788 vs. ExPASy TrEMBL
Match: A0A5A7VFF4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002860 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQK+KMARE+NLEKQK SSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKAKMARERNLEKQK-SSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLK 78
          EARHPKSDVYACFPHLK
Sbjct: 61 EARHPKSDVYACFPHLK 76

[Close]

BLAST of Carg21788 vs. ExPASy TrEMBL
Match: A0A5B6WMP6 (4F5 domain-containing protein/zf-met2 domain-containing protein OS=Gossypium australe OX=47621 GN=EPI10_004701 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 69/77 (89.61%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK++++GSQLE NKKAM+IQCKVCMQTF+CTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKAAAKGSQLESNKKAMSIQCKVCMQTFMCTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLK 78
          EA+HPKSDVYACFPHLK
Sbjct: 61 EAKHPKSDVYACFPHLK 77

[Close]

BLAST of Carg21788 vs. ExPASy TrEMBL
Match: A0A1S3BU86 (uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQK+KMARE+NLEKQK SSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKAKMARERNLEKQK-SSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLK 78
          EARHPKSDVYACFPHLK
Sbjct: 61 EARHPKSDVYACFPHLK 76

[Close]

BLAST of Carg21788 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-30
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QKS MAR KNLEK K++ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLK 78
          EA+HPK+DV ACFPHLK
Sbjct: 61 EAKHPKADVVACFPHLK 77

The following BLAST results are available for this feature:

BLAST of Carg21788 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937248.1	3.9e-37	100.00	uncharacterized protein At2g23090-like [Cucurbita moschata] >KAG6591413.1 hypoth...	[more]
XP_023535928.1	2.6e-36	98.78	uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977152.1	2.6e-36	98.78	uncharacterized protein At2g23090-like [Cucurbita maxima]	[more]
XP_038897649.1	2.5e-31	96.10	uncharacterized protein At2g23090-like [Benincasa hispida]	[more]
XP_027347192.1	3.2e-31	90.91	uncharacterized protein At2g23090 [Abrus precatorius]	[more]

BLAST of Carg21788 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64818	1.8e-29	81.82	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P...	[more]

BLAST of Carg21788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFL3	1.9e-37	100.00	uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1IHN4	1.2e-36	98.78	uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC1114773...	[more]
A0A5A7VFF4	2.7e-31	94.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5B6WMP6	2.7e-31	89.61	4F5 domain-containing protein/zf-met2 domain-containing protein OS=Gossypium aus...	[more]
A0A1S3BU86	2.7e-31	94.81	uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 P...	[more]

BLAST of Carg21788 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23090.1	1.3e-30	81.82	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 3..36 e-value: 7.0E-7 score: 30.0
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..78 e-value: 3.6E-33 score: 115.8
IPR039438	At2g23090-like, zinc-binding domain	PFAM	PF12907	zf-met2	coord: 39..76 e-value: 2.2E-20 score: 72.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33788:SF19	SUBFAMILY NOT NAMED	coord: 1..77
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..77
IPR039713	At2g23090-like	PANTHER	PTHR33788	OS07G0114300 PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21788-RA	Carg21788-RA	mRNA