Carg21786 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21786
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Glycosyl hydrolase family 35 protein
Location	Carg_Chr09: 1295960 .. 1296326 (+)
RNA-Seq Expression	Carg21786
Synteny	Carg21786

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGAGCCACCACCATGTCAATCCAAACGAATGCTTGTCTGACATACCCTTTAACAGGAAGCTGAAGGTACTACCCTTTTAAAGCCTTTAAACCCAACAACTCACTTTCATAATGCATCTCTGTTCTTGATTAATGAGATTGGTTACAACTTTTTGGTTCCCAGTTCCAGACTGATAAACATAATAGCCTGGGGAAAAAGAAGGTTCACCCAGGTGATCTTAAACTTGATGACTACCCTTCCATTGACCCAGTTCCAAGCTCAAAGACATCAGTCAAACCCGGGCCAATAGAGCATGGGGCTCCTCTCCTTCCTCATATGCCAATTCCTCCTCCTCCTGACCAGCCGGGCGATTATGCTTAG

mRNA sequence

ATGGCTTTGAGCCACCACCATGTCAATCCAAACGAATGCTTGTCTGACATACCCTTTAACAGGAAGCTGAAGTTCCAGACTGATAAACATAATAGCCTGGGGAAAAAGAAGGTTCACCCAGGTGATCTTAAACTTGATGACTACCCTTCCATTGACCCAGTTCCAAGCTCAAAGACATCAGTCAAACCCGGGCCAATAGAGCATGGGGCTCCTCTCCTTCCTCATATGCCAATTCCTCCTCCTCCTGACCAGCCGGGCGATTATGCTTAG

Coding sequence (CDS)

ATGGCTTTGAGCCACCACCATGTCAATCCAAACGAATGCTTGTCTGACATACCCTTTAACAGGAAGCTGAAGTTCCAGACTGATAAACATAATAGCCTGGGGAAAAAGAAGGTTCACCCAGGTGATCTTAAACTTGATGACTACCCTTCCATTGACCCAGTTCCAAGCTCAAAGACATCAGTCAAACCCGGGCCAATAGAGCATGGGGCTCCTCTCCTTCCTCATATGCCAATTCCTCCTCCTCCTGACCAGCCGGGCGATTATGCTTAG

Protein sequence

MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTSVKPGPIEHGAPLLPHMPIPPPPDQPGDYA

Homology

[Close]

BLAST of Carg21786 vs. NCBI nr
Match: KAG7024294.1 (hypothetical protein SDJN02_13108, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 5.6e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
          MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS
Sbjct: 1  MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60

Query: 61 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
          VKPGPIEHGAPLLPHMPIPPPPDQPGDYA
Sbjct: 61 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 89

[Close]

BLAST of Carg21786 vs. NCBI nr
Match: KAG6591414.1 (hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 5.6e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS
Sbjct: 104 MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 163

Query: 61  VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
           VKPGPIEHGAPLLPHMPIPPPPDQPGDYA
Sbjct: 164 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 192

[Close]

BLAST of Carg21786 vs. NCBI nr
Match: XP_022937047.1 (uncharacterized protein LOC111443464 [Cucurbita moschata])

HSP 1 Score: 187.6 bits (475), Expect = 4.7e-44
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           MALSHHHV+PNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYP+IDPVPSSKTS
Sbjct: 87  MALSHHHVSPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPTIDPVPSSKTS 146

Query: 61  VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
           VKPGPIEHGAPLLPHMPIPPPPDQPGDYA
Sbjct: 147 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Carg21786 vs. NCBI nr
Match: XP_022977124.1 (uncharacterized protein LOC111477287 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           MALSHHHVNPNECLSD+PFNRKLKFQTD+HNSLGKK VHPGDLKLDDYP+IDPVPSSKTS
Sbjct: 87  MALSHHHVNPNECLSDLPFNRKLKFQTDEHNSLGKKMVHPGDLKLDDYPTIDPVPSSKTS 146

Query: 61  VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
           VKPGPIEHGAPLLPHMPIPPPPDQPGDYA
Sbjct: 147 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Carg21786 vs. NCBI nr
Match: XP_023536374.1 (uncharacterized protein LOC111797561 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           MALSHHHVNPNECL DIPFNRKLKFQT KHNSLGKKKV+PGDLKLDDYP+IDPVPSSKTS
Sbjct: 34  MALSHHHVNPNECLYDIPFNRKLKFQTYKHNSLGKKKVNPGDLKLDDYPTIDPVPSSKTS 93

Query: 61  VKPGPIEHGAPLLPHMPI-PPPPDQPGDYA 90
           VKPGPIEHGAPLLPHMPI PPPPDQPGDYA
Sbjct: 94  VKPGPIEHGAPLLPHMPIPPPPPDQPGDYA 123

[Close]

BLAST of Carg21786 vs. ExPASy TrEMBL
Match: A0A6J1FA15 (uncharacterized protein LOC111443464 OS=Cucurbita moschata OX=3662 GN=LOC111443464 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-44
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           MALSHHHV+PNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYP+IDPVPSSKTS
Sbjct: 87  MALSHHHVSPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPTIDPVPSSKTS 146

Query: 61  VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
           VKPGPIEHGAPLLPHMPIPPPPDQPGDYA
Sbjct: 147 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Carg21786 vs. ExPASy TrEMBL
Match: A0A6J1IQK4 (uncharacterized protein LOC111477287 OS=Cucurbita maxima OX=3661 GN=LOC111477287 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           MALSHHHVNPNECLSD+PFNRKLKFQTD+HNSLGKK VHPGDLKLDDYP+IDPVPSSKTS
Sbjct: 87  MALSHHHVNPNECLSDLPFNRKLKFQTDEHNSLGKKMVHPGDLKLDDYPTIDPVPSSKTS 146

Query: 61  VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
           VKPGPIEHGAPLLPHMPIPPPPDQPGDYA
Sbjct: 147 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Carg21786 vs. ExPASy TrEMBL
Match: A0A5A7VB21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002820 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
          +AL+ HHVN  +CLSD+P NRKLKFQTD+H++LG+KKVHPGDL LDDY  IDPVPSSKTS
Sbjct: 5  IALNQHHVNAKKCLSDMPLNRKLKFQTDEHSNLGRKKVHPGDLNLDDYHPIDPVPSSKTS 64

Query: 61 VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
          VKPGPIEH APLLPHMP PPPP+QPG YA
Sbjct: 65 VKPGPIEHSAPLLPHMPNPPPPNQPGGYA 93

[Close]

BLAST of Carg21786 vs. ExPASy TrEMBL
Match: A0A1S3BV38 (uncharacterized protein LOC103493595 OS=Cucumis melo OX=3656 GN=LOC103493595 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           +AL+ HHVN  +CLSD+P NRKLKFQTD+H++LG+KKVHPGDL LDDY  IDPVPSSKTS
Sbjct: 34  IALNQHHVNAKKCLSDMPLNRKLKFQTDEHSNLGRKKVHPGDLNLDDYHPIDPVPSSKTS 93

Query: 61  VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
           VKPGPIEH APLLPHMP PPPP+QPG YA
Sbjct: 94  VKPGPIEHSAPLLPHMPNPPPPNQPGGYA 122

[Close]

BLAST of Carg21786 vs. ExPASy TrEMBL
Match: A0A0A0L2J3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642400 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.9e-33
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKTS 60
           +AL+HHHVN N+CLSDI  NRKLKFQTD+H + G+KKVHP DL LDDY  IDPVPSSKTS
Sbjct: 34  IALNHHHVNANKCLSDILLNRKLKFQTDEHCNHGRKKVHPDDLNLDDYHPIDPVPSSKTS 93

Query: 61  VKPGPIEHGAPLLPHMPIPPPPDQPGDYA 90
           VKPGPIEHGAPLLPHMP PPPP QPG YA
Sbjct: 94  VKPGPIEHGAPLLPHMPNPPPPSQPGGYA 122

[Close]

BLAST of Carg21786 vs. TAIR 10
Match: AT5G01075.1 (Glycosyl hydrolase family 35 protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 45 LDDYP-SIDPVPSSKTSVKPGPIEHGAPLLPHMPIPPPP 83
          L+DY   +DP P++K S+KPGPIEHG PL P++P PP P
Sbjct: 30 LEDYNFPVDPTPTTKASIKPGPIEHGTPLNPYIPKPPSP 68

The following BLAST results are available for this feature:

BLAST of Carg21786 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024294.1	5.6e-45	100.00	hypothetical protein SDJN02_13108, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591414.1	5.6e-45	100.00	hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022937047.1	4.7e-44	97.75	uncharacterized protein LOC111443464 [Cucurbita moschata]	[more]
XP_022977124.1	3.1e-43	95.51	uncharacterized protein LOC111477287 [Cucurbita maxima]	[more]
XP_023536374.1	1.1e-40	94.44	uncharacterized protein LOC111797561 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg21786 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FA15	2.3e-44	97.75	uncharacterized protein LOC111443464 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A6J1IQK4	1.5e-43	95.51	uncharacterized protein LOC111477287 OS=Cucurbita maxima OX=3661 GN=LOC111477287...	[more]
A0A5A7VB21	1.4e-33	78.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV38	1.4e-33	78.65	uncharacterized protein LOC103493595 OS=Cucumis melo OX=3656 GN=LOC103493595 PE=...	[more]
A0A0A0L2J3	6.9e-33	79.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642400 PE=4 SV=1	[more]

BLAST of Carg21786 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01075.1	1.9e-06	58.97	Glycosyl hydrolase family 35 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..89
None	No IPR available	PANTHER	PTHR37249	OS03G0206201 PROTEIN	coord: 6..87
None	No IPR available	PANTHER	PTHR37249:SF3	BNAANNG14020D PROTEIN	coord: 6..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21786-RA	Carg21786-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane