Carg21755 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21755
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA binding protein
Location	Carg_Chr09: 1451303 .. 1451871 (-)
RNA-Seq Expression	Carg21755
Synteny	Carg21755

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCAAGAGTTGCATTGCAGCCGCGAAAAAACGCCCGTGAAGAGTGGAGCGGCAACGTCGCATGAGCTGCAATGGTGGAGTTTTCACACTCCGATCCAGGCCTCTGGAGCGAAGCTCTTTCTTCTTATCCTTCTCAAATCGAAGCCTTGGGCAAGCCGAATTTGGTTTCTCTGGATGATTTTTACCGGAACGAACTCCCTCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCATCGCGGAAAATGGAGGTCACCACTGCTCTGTTTCTCTTACTCTTCATTTAGGTTGCCTATCGATTTTATTGACAATTAGTTTACGAATTTCAGGCCGCGGCTATTGGACTTTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACTCCGCTCAAAGGCGTCGGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGTGA

mRNA sequence

GACCAAGAGTTGCATTGCAGCCGCGAAAAAACGCCCGTGAAGAGTGGAGCGGCAACGTCGCATGAGCTGCAATGGTGGAGTTTTCACACTCCGATCCAGGCCTCTGGAGCGAAGCTCTTTCTTCTTATCCTTCTCAAATCGAAGCCTTGGGCAAGCCGAATTTGGTTTCTCTGGATGATTTTTACCGGAACGAACTCCCTCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCATCGCGGAAAATGGAGGCCGCGGCTATTGGACTTTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACTCCGCTCAAAGGCGTCGGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGTGA

Coding sequence (CDS)

ATGGTGGAGTTTTCACACTCCGATCCAGGCCTCTGGAGCGAAGCTCTTTCTTCTTATCCTTCTCAAATCGAAGCCTTGGGCAAGCCGAATTTGGTTTCTCTGGATGATTTTTACCGGAACGAACTCCCTCCTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTTATGCAATGGAAGCTCATCGCGGAAAATGGAGGCCGCGGCTATTGGACTTTGTTTCATCGTTGGATGAATCGCTCGTCAAATTGGCCTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTATCTGAGCTTACTCCGCTCAAAGGCGTCGGTCCGGCTACTGCCTCGGCGGTTCTGGCCGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGTGA

Protein sequence

MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSELSKLMQWKLIAENGGRGYWTLFHRWMNRSSNWPLRRPSNAFLIFPKPYLSLLRSKASVRLLPRRFWPPTRRMLRLSCPTR

Homology

[Close]

BLAST of Carg21755 vs. NCBI nr
Match: KAG7024325.1 (hypothetical protein SDJN02_13139 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.4 bits (755), Expect = 2.5e-76
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60
           MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL
Sbjct: 1   MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLIAENGGRGYWTLFHRWMNRSSNWPLRRPSNAFLIFPKPYLSLLRSKASVRLL 120
           SKLMQWKLIAENGGRGYWTLFHRWMNRSSNWPLRRPSNAFLIFPKPYLSLLRSKASVRLL
Sbjct: 61  SKLMQWKLIAENGGRGYWTLFHRWMNRSSNWPLRRPSNAFLIFPKPYLSLLRSKASVRLL 120

Query: 121 PRRFWPPTRRMLRLSCPTR 140
           PRRFWPPTRRMLRLSCPTR
Sbjct: 121 PRRFWPPTRRMLRLSCPTR 139

[Close]

BLAST of Carg21755 vs. NCBI nr
Match: KAG6591445.1 (hypothetical protein SDJN03_13791, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 71/78 (91.03%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60
          MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL
Sbjct: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLIAENGGRGYW 79
          SKLMQWKL      RG W
Sbjct: 61 SKLMQWKLT-----RGKW 73

[Close]

BLAST of Carg21755 vs. NCBI nr
Match: XP_022977105.1 (uncharacterized protein LOC111477273 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 5.5e-31
Identity = 70/78 (89.74%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60
          MVEF+HSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL
Sbjct: 1  MVEFAHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLIAENGGRGYW 79
          SKLMQWKL      RG W
Sbjct: 61 SKLMQWKLT-----RGKW 73

[Close]

BLAST of Carg21755 vs. NCBI nr
Match: XP_023536029.1 (uncharacterized protein LOC111797290 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-30
Identity = 69/78 (88.46%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60
          MVEFSHS+PGLWSEAL SYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL
Sbjct: 1  MVEFSHSEPGLWSEALCSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLIAENGGRGYW 79
          SKLMQWKL      RG W
Sbjct: 61 SKLMQWKLT-----RGKW 73

[Close]

BLAST of Carg21755 vs. NCBI nr
Match: XP_022936826.1 (uncharacterized protein LOC111443296 [Cucurbita moschata])

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-29
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 2  VEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSELS 61
          +EFSHSDPGLWSEALSSYPS+IEALGKPNLVSLD+FYRNELPPLLHKRNPSPYITTSELS
Sbjct: 1  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60

Query: 62 KLMQWKLIAENGGRGYW 79
          KLMQWKL      RG W
Sbjct: 61 KLMQWKLT-----RGKW 72

[Close]

BLAST of Carg21755 vs. ExPASy TrEMBL
Match: A0A6J1ILC1 (uncharacterized protein LOC111477273 OS=Cucurbita maxima OX=3661 GN=LOC111477273 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.7e-31
Identity = 70/78 (89.74%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60
          MVEF+HSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL
Sbjct: 1  MVEFAHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLIAENGGRGYW 79
          SKLMQWKL      RG W
Sbjct: 61 SKLMQWKLT-----RGKW 73

[Close]

BLAST of Carg21755 vs. ExPASy TrEMBL
Match: A0A6J1F8K0 (uncharacterized protein LOC111443296 OS=Cucurbita moschata OX=3662 GN=LOC111443296 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.5e-30
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 2  VEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSELS 61
          +EFSHSDPGLWSEALSSYPS+IEALGKPNLVSLD+FYRNELPPLLHKRNPSPYITTSELS
Sbjct: 1  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60

Query: 62 KLMQWKLIAENGGRGYW 79
          KLMQWKL      RG W
Sbjct: 61 KLMQWKLT-----RGKW 72

[Close]

BLAST of Carg21755 vs. ExPASy TrEMBL
Match: A0A6J1CCK9 (uncharacterized protein LOC111010256 OS=Momordica charantia OX=3673 GN=LOC111010256 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.7e-26
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60
          MVEF +SDP LW EALSSYPSQIEALGKPNLVSLD FYRNELP LLHKRNP+PYITT EL
Sbjct: 1  MVEFQNSDPILWGEALSSYPSQIEALGKPNLVSLDHFYRNELPNLLHKRNPNPYITTPEL 60

Query: 61 SKLMQWKLIAENGGRGYW 79
          SKLMQWKL      RG W
Sbjct: 61 SKLMQWKLT-----RGKW 73

[Close]

BLAST of Carg21755 vs. ExPASy TrEMBL
Match: A0A0A0L3W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60
          M+EFS SDP LW EALS+Y SQIEALGKPNLVSLDDFYRNELP +LHKRNPSPYITTSEL
Sbjct: 1  MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLIAENGGRGYW 79
          SKLMQWKL      RG W
Sbjct: 61 SKLMQWKLT-----RGKW 73

[Close]

BLAST of Carg21755 vs. ExPASy TrEMBL
Match: A0A5D3D9C6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002390 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.3e-25
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 2  VEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSELS 61
          ++FS+SDP LW EALSSY SQIEALGKPNLVSLDDFYRNELP +LHKR PSPYITTSELS
Sbjct: 1  MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62 KLMQWKLIAENGGRGYW 79
          KLMQWKL      RG W
Sbjct: 61 KLMQWKLT-----RGKW 72

[Close]

BLAST of Carg21755 vs. TAIR 10
Match: AT3G12210.2 (DNA binding )

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 2  VEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSELS 61
          +EF  SD G+W EALSSY S+IE+L KP LVSLD FYR +LP LLH R+P+PY+TTSELS
Sbjct: 3  LEFKCSDVGVWKEALSSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELS 62

Query: 62 KLMQWKLIAENGGRGYW 79
          +LM+WKL      RG W
Sbjct: 63 QLMKWKL-----SRGKW 74

[Close]

BLAST of Carg21755 vs. TAIR 10
Match: AT3G12210.1 (DNA binding )

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 2  VEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSELS 61
          +EF  SD G+W EALSSY S+IE+L KP LVSLD FYR +LP LLH R+P+PY+TTSELS
Sbjct: 3  LEFKCSDVGVWKEALSSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELS 62

Query: 62 KLMQWKLIAENGGRGYW 79
          +LM+WKL      RG W
Sbjct: 63 QLMKWKL-----SRGKW 74

The following BLAST results are available for this feature:

BLAST of Carg21755 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024325.1	2.5e-76	100.00	hypothetical protein SDJN02_13139 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591445.1	2.5e-31	91.03	hypothetical protein SDJN03_13791, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022977105.1	5.5e-31	89.74	uncharacterized protein LOC111477273 [Cucurbita maxima]	[more]
XP_023536029.1	2.7e-30	88.46	uncharacterized protein LOC111797290 [Cucurbita pepo subsp. pepo]	[more]
XP_022936826.1	1.8e-29	87.01	uncharacterized protein LOC111443296 [Cucurbita moschata]	[more]

BLAST of Carg21755 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21755 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILC1	2.7e-31	89.74	uncharacterized protein LOC111477273 OS=Cucurbita maxima OX=3661 GN=LOC111477273...	[more]
A0A6J1F8K0	8.5e-30	87.01	uncharacterized protein LOC111443296 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1CCK9	5.7e-26	80.77	uncharacterized protein LOC111010256 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A0A0L3W6	7.5e-26	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1	[more]
A0A5D3D9C6	6.3e-25	79.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg21755 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12210.2	1.1e-21	63.64	DNA binding	[more]
AT3G12210.1	1.1e-21	63.64	DNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21521	UNCHARACTERIZED	coord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21755-RA	Carg21755-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane