Carg21736 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21736
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 1539683 .. 1541643 (-)
RNA-Seq ExpressionCarg21736
SyntenyCarg21736
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTGTCAGGGCGCCAGGTTTCATGCGCCATGAATGCGTGGCCATTCCATTTCCAGGCACTCTCCTAGTTGGTATCCATTGGAAAGTGAAATCAAGGAGTGTCATACATTGGAAATGGAACAACTCTCTCTCTCTCTGTTTAATTTACTTTTATTACTCACAATTTCAGGTAAATTCTGTGTCATTGACGGTTTTACTTGGACAGATTTAGGTAATGCACGCCTTCACCGGGTAAGATATCAATTGCTCCAATTCAGAAGGAGAAGGTACCCGTAGGAATGATTCTGGCAGACAAAGTTACAGGCTGGGCTTCTCTATAAGTCCTTTCGTTCTATAACAGAGATGAAAATCAAGCTCAAATGGGCGTTTGTCGTGCATATCTTGTATTCCATGATAGTAATTTTGATCCAATTATCTTAAAAGTAACTTCAATTGCAGGGTGCTCTGGAAGAAACCATCATCTGGGGCTGGCGAACATCAGCAGCTTTTCCAACCTCGTGGCTATAAACTCCCAATTTTTGGTTGGTTACCTACTTGCTGCATTGTTTGGCTTTTCTTTTAATATTTATACCTTGCATCGGAATCTTATCTTTGGGAGGGCTAAATCAAACCACATCTCGTTCAAATATGTCTATTGTGTTTTAGTGTCATGTTGGGTTAGGACAAATTATACTACACGAAATCAGGCATGGTTGGTCATGCTTAAAAGTTGAAATTTGGTTCACCTACCTTTACTCACAATTCAGCTTCATATGCAATCATTTAAATCTCATCTGTTCATGATTCCCAGGCCCATCATCACCCTGCGGCTGCTACCGTTTACCAATCTCATCATTCTTCATGAGATTCATGTTTAACATCTTTATTATTGACTAATTATTCATGTTTAGGATAATTAATACAGATTTGGTAAATCTAAGAAGGGTTTAATTTTAATTTTAACTTTAATTTTTTAGCCTATTATTGTTATTATTATTGTTTAAACTTGTGTTTTTTTTAGTAATATTTGTTGACGCGGGAACTCCAACGTGGTAAGCTGTATTGTAAGTTTGTAACCGTTCTCCTCTTATCCAAACACATTAATACTTTGATTCTTTATAGTTCCACGTAGTTTCTCTCTCTTAATTTGTAAATGTTTTGATCCTTTAGAAATTCATGTCGAATTATTTAATCTATATAAACACGAGAATTTAAACGAAATAATTAAAAGAAATTTGACCGTCAAGAAAAACAATTAAGAGTTAAAAGCAATGGTACGAGGTTTGGGAAACTTCAGTATTGGATAAGGACACGTAAGAGGTGAGCTGGCAAATCCCTTCTAATGCCAGCTTCACGCTATTGTTTTATTCTTGAAATGACCTGCTTCATTCGCCTAAAATCAATTACCTAATTTAACAAAAATTAATTGCAATTGCCAACTATATTTCAAAAAATTTAATGTGATTTTATCAATATAAAATACAGCATAGTCAAAACGGAGGCAAAATTTGAATTTCAAGTTAAAAGGGAGGGCTGCTTTACAAATTTTTGTAATAAAAAAGAAAAAGAATCTTTTATTTTAATTATTTTTATTTTTTGATTTCCTTGATTGCACATATCTAGCGAAGTTGAATATCAATTATCATATCATGTAACCTCAGATAACTGTCCGATCCGCGTACTTTCTTAAGATTCCGAATTAATAATAATTAATAAGAAAATCAAATTGACTGTTTTGCTTCAATTGTCTACTTCATTACAGCGTTAAACCCGCTTGCCACTGTTTTGATCGGACGGTTGAGAGGAAGCTGAAAATGGAGTTGAACCGACAGAGATGGGACCCAGTTCAACAATTTTATCAGGGTATTGATAAAGGCATGGACTTGGAAGAAATCAAGGGTCAGGATGAAGAGGGTCAATGGAAGAATGGTGGATGTGATTGCAGACGATCGAGATGGCGTCATTGACTTGAGAAGAAG

mRNA sequence

ATGAACTGTCAGGGCGCCAGCGTTAAACCCGCTTGCCACTGTTTTGATCGGACGGTTGAGAGGAAGCTGAAAATGGAGTTGAACCGACAGAGATGGGACCCAGTTCAACAATTTTATCAGGGTATTGATAAAGGCATGGACTTGGAAGAAATCAAGGGTCAGGATGAAGAGGGTCAATGGAAGAATGGTGGATGTGATTGCAGACGATCGAGATGGCGTCATTGACTTGAGAAGAAG

Coding sequence (CDS)

ATGAACTGTCAGGGCGCCAGCGTTAAACCCGCTTGCCACTGTTTTGATCGGACGGTTGAGAGGAAGCTGAAAATGGAGTTGAACCGACAGAGATGGGACCCAGTTCAACAATTTTATCAGGGTATTGATAAAGGCATGGACTTGGAAGAAATCAAGGGTCAGGATGAAGAGGGTCAATGGAAGAATGGTGGATGTGATTGCAGACGATCGAGATGGCGTCATTGA

Protein sequence

MNCQGASVKPACHCFDRTVERKLKMELNRQRWDPVQQFYQGIDKGMDLEEIKGQDEEGQWKNGGCDCRRSRWRH
Homology
[Close]
BLAST of Carg21736 vs. NCBI nr
Match: KAG7024344.1 (hypothetical protein SDJN02_13158, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.2 bits (422), Expect = 5.5e-38
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MNCQGASVKPACHCFDRTVERKLKMELNRQRWDPVQQFYQGIDKGMDLEEIKGQDEEGQW 60
          MNCQGASVKPACHCFDRTVERKLKMELNRQRWDPVQQFYQGIDKGMDLEEIKGQDEEGQW
Sbjct: 1  MNCQGASVKPACHCFDRTVERKLKMELNRQRWDPVQQFYQGIDKGMDLEEIKGQDEEGQW 60

Query: 61 KNGGCDCRRSRWRH 75
          KNGGCDCRRSRWRH
Sbjct: 61 KNGGCDCRRSRWRH 74

[Close]
BLAST of Carg21736 vs. NCBI nr
Match: KAG6591462.1 (hypothetical protein SDJN03_13808, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 1.8e-33
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 7  SVKPACHCFDRTVERKLKMELNRQRWDPVQQFYQGIDKGMDLEEIKGQDEEGQWKNGGCD 66
          +VKPACHCFDRTVERKLKMELNRQRWDPVQQFYQGIDKGMDLEEIKGQDEEGQWKNGGCD
Sbjct: 15 TVKPACHCFDRTVERKLKMELNRQRWDPVQQFYQGIDKGMDLEEIKGQDEEGQWKNGGCD 74

Query: 67 CRRSRWRH 75
          CRRSRWRH
Sbjct: 75 CRRSRWRH 82

The following BLAST results are available for this feature:
BLAST of Carg21736 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024344.15.5e-38100.00hypothetical protein SDJN02_13158, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591462.11.8e-3398.53hypothetical protein SDJN03_13808, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg21736 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21736 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21736 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21736-RACarg21736-RAmRNA