Carg21689 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21689
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 4506501 .. 4507521 (+)
RNA-Seq ExpressionCarg21689
SyntenyCarg21689
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCAGGATACCCATTTCTGCTGTTATATGACACCATTTGCTTGCACCAGGTCCTTGTAGCCTTGCGGTTACTGGTGGCTAGAAACTACTTGAGTAATCTTTATCCGGTCTTGCTGCTCATGGATTTCCCAAGCTGGGGTCTTGAGGGCTAAAATACATGTACTTCAATACCATCTCCCTGGTGAAACTTAAGTTGGTCGAATCAGATCATCAAAAATCTACTGCCGAGAAGAATTGGGATGTCAGTCGAAACGGCCAAGAGCTTACCCTATTCTCCCGATCCCAACTTATGTAACTTGCGAAAGTTCTTAGCCAGAAGATCAATCTCAATTTTATCAGAACTCATGAACTGTCTTCAATGTATTATCAGATAAGCTGATGGAAGTGTGTTGATATAAAATTAAATGTATAAAGGAAGTAGGAATATGATTCTGTGCTTATCAGTTTCTATTGGAAAGCATGCTCTGCAGGAAGTGCATAGTTTTATGGTTTAACATTGCAAGCAAATCATATCGATTTACAACCCCCAATACACTGTGCATAAGCATAAGCTTCCCAGTCAATAAACGATGTTGGCAAAGACATTACAAGAAAATCCTAATCGAACATATATATTTCTTGGAACAAATACTGAAAAAATCAATACAAATCATCTGTGTATACATTGCATCTCTGAGCTGATCATCTGTTTTTGTGCAGCCACAAACAGATTCATGTCGTTTTGAGACATACATGGTGCCTGCCTTATACTCTTCCCCTGGCAAAGGCATGAGCTTCTGTGTCAGTTCGATTCTATGCTACTGGATTCCTTCTATGAATCTGAACAAGAATTCAAGCCTAAACTTCTTCAACGAGCAAGATATTCAGAATAGCTGCAATACTTCTTGCCGCCTCATCTCTGGTATAGACGCTAAACATGGCTACCTTGACACATTTTCTAATTTGATGGCAGTACTTTCTGTTGGGCTAATAACATTGATCTATTCAATTGTGCAACTTGTTGCAGTAGTTGGCTGA

mRNA sequence

ATGTCGGCAGGATACCCATTTCTGCTGTTATATGACACCATTTGCTTGCACCAGGTCCTTGTAGCCTTGCGGTTACTGGTGGCTAGAAACTACTTGAGTAATCTTTATCCGCCACAAACAGATTCATGTCGTTTTGAGACATACATGGTGCCTGCCTTATACTCTTCCCCTGGCAAAGGCATGAGCTTCTGTGTCAGTTCGATTCTATGCTACTGGATTCCTTCTATGAATCTGAACAAGAATTCAAGCCTAAACTTCTTCAACGAGCAAGATATTCAGAATAGCTGCAATACTTCTTGCCGCCTCATCTCTGGTATAGACGCTAAACATGGCTACCTTGACACATTTTCTAATTTGATGGCAGTACTTTCTGTTGGGCTAATAACATTGATCTATTCAATTGTGCAACTTGTTGCAGTAGTTGGCTGA

Coding sequence (CDS)

ATGTCGGCAGGATACCCATTTCTGCTGTTATATGACACCATTTGCTTGCACCAGGTCCTTGTAGCCTTGCGGTTACTGGTGGCTAGAAACTACTTGAGTAATCTTTATCCGCCACAAACAGATTCATGTCGTTTTGAGACATACATGGTGCCTGCCTTATACTCTTCCCCTGGCAAAGGCATGAGCTTCTGTGTCAGTTCGATTCTATGCTACTGGATTCCTTCTATGAATCTGAACAAGAATTCAAGCCTAAACTTCTTCAACGAGCAAGATATTCAGAATAGCTGCAATACTTCTTGCCGCCTCATCTCTGGTATAGACGCTAAACATGGCTACCTTGACACATTTTCTAATTTGATGGCAGTACTTTCTGTTGGGCTAATAACATTGATCTATTCAATTGTGCAACTTGTTGCAGTAGTTGGCTGA

Protein sequence

MSAGYPFLLLYDTICLHQVLVALRLLVARNYLSNLYPPQTDSCRFETYMVPALYSSPGKGMSFCVSSILCYWIPSMNLNKNSSLNFFNEQDIQNSCNTSCRLISGIDAKHGYLDTFSNLMAVLSVGLITLIYSIVQLVAVVG
Homology
[Close]
BLAST of Carg21689 vs. NCBI nr
Match: KAG7037121.1 (hypothetical protein SDJN02_00742, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSAGYPFLLLYDTICLHQVLVALRLLVARNYLSNLYPPQTDSCRFETYMVPALYSSPGKG 60
           MSAGYPFLLLYDTICLHQVLVALRLLVARNYLSNLYPPQTDSCRFETYMVPALYSSPGKG
Sbjct: 1   MSAGYPFLLLYDTICLHQVLVALRLLVARNYLSNLYPPQTDSCRFETYMVPALYSSPGKG 60

Query: 61  MSFCVSSILCYWIPSMNLNKNSSLNFFNEQDIQNSCNTSCRLISGIDAKHGYLDTFSNLM 120
           MSFCVSSILCYWIPSMNLNKNSSLNFFNEQDIQNSCNTSCRLISGIDAKHGYLDTFSNLM
Sbjct: 61  MSFCVSSILCYWIPSMNLNKNSSLNFFNEQDIQNSCNTSCRLISGIDAKHGYLDTFSNLM 120

Query: 121 AVLSVGLITLIYSIVQLVAVVG 143
           AVLSVGLITLIYSIVQLVAVVG
Sbjct: 121 AVLSVGLITLIYSIVQLVAVVG 142

[Close]
BLAST of Carg21689 vs. NCBI nr
Match: KAG6607464.1 (hypothetical protein SDJN03_00806, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-16
Identity = 50/69 (72.46%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 1  MSAGYPFLLLYDTICLHQVLVALRLLVARNYLSNLYPPQTDSCRFETYMVPALYSSPGKG 60
          MSAGYPFLLLYDTICLHQ                   PQTDSCRFETYMVPALYSSPGKG
Sbjct: 27 MSAGYPFLLLYDTICLHQ-------------------PQTDSCRFETYMVPALYSSPGKG 76

Query: 61 MSFCVSSIL 70
          MSFCVSSIL
Sbjct: 87 MSFCVSSIL 76

The following BLAST results are available for this feature:
BLAST of Carg21689 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037121.16.5e-72100.00hypothetical protein SDJN02_00742, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607464.11.8e-1672.46hypothetical protein SDJN03_00806, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg21689 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21689 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21689 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21689-RACarg21689-RAmRNA