Carg21601 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21601
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein YABBY 4-like
Location	Carg_Chr06: 4056093 .. 4057992 (+)
RNA-Seq Expression	Carg21601
Synteny	Carg21601

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCTTTTTCCCTTCCCACCACCTTCTCCCAACATCCTCCTCCTCCTTCCTCCGACCACCTTTGCTATGTCCATTGCAACGTTTGCGACACAGTTTTGGCGGTACATTCCCATTTGTTGCGACTATTAAGGTTTCTTCTTATGTTCTTTTTTTTATATATGATTGAAGTTTGTGTTTTTATTTAGGTGAGTGTTCCTTGTGCTAGTTTGTTCAAAACGGTGACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTCAACATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACTTTCATCATACTGCTTTCTTCTCTCCCAATGCTCACAATTTTCTGGTACACTAAACCCTATTTAGTATCGTTTATGTTTTCGATTTCCTTTCAAAATTTAGGTCATTCATTTTGAAACGAAATCGTTATTGAACTCAACCTATTAATTTGATTGCTAACCCTAAAGGGATCGGTAGAACTTATGCTTTTTACTTTTGGGGGTTGTTTTCAGGAAGAGATCTCAAATCCAAATCCAAATTTTGTGATGAACCAAACCGACGGAATTGATTTGGCAATGGCAACTCGGGTAGGAAACGATGTTCCAAGGCCACCCCCAAGCATAAATAGACGTGAGATAATTGAATTCATTTCTTAAATTTTGTTATGTTTTTACTACAATGTCGTTGTAGTATTAGTAGTGAGTATTCCCGCCTGAAATTTTGTTCTGTTTTTTTGTGTGGTCTTTTCATACAAATTTGGAACTCTGGATAGGTCTAAAATGGGTGCGAATGAAATCCTTTGTTTTTTAGGGGAATTGATTCTAAGGATGAACAAACCCTTTAAACACTCCCATATTTTGAAAATTTGTGACCAAATGACTCAATGTTGGAGTAAAAATAGAGAAAAACACAAGAAGATTCAAAATTGGAACGGATTAAGATTATGGTTTAAGGAATTCTTGTAGTATTTGGAGGAGGCATGTGAAGTGTTGTAAGTTGTTGAGTAGCTAAGATGATATTGAGAACAAAATTAAGGTAAGAGGAGAACATAGAAACAAAATGTTGTACAGAAATTTGAATTATGTTGTCATATTGTTTGGTTGATATATTGGATGGATTCCAAGATCATTAACTATTCTCTTCTGCAGCCCTAGTTGCTTTTCTCTTGTTTAGGGCTGCCACCTATACAACTTTCAAACAACAAAACAGTTCACGAGACCAATAAAATTATGATCAACCCTTTAATTAGTCAATATGGGACTCCTCCCCCAAACAATCCTCAACGAATTTTACTTTTAACTTAGAACGACTATGTTTTATTTTATTCTCCTCAGTGTTTGTTTGGTTTGTGAATTGAAATGGGATTAGGGTTTGGAAGTGAGATTGAAAAGGGGATTGATTTAAATTGTGACACAGCTGCAGAAAAGAAACAGAGAGTACCCTCTGCATACAACCGATTCATCAAGTGAGTACACCATTGTTTCATGTTTCTTTTCTTTTTTTATGTCTGTGGTTTGGTGTTGAGAAAGTGAGGGGTGATGTATGTATATATATATATATATATATATATATATATATTGCAATTGCAGGGAGGAGATCCAACGCATCAAGGCTGCCAATCCAGACATCTCTCACAGAGAAGCCTTCAGCGCTGCAGCTAAGAATGTATGTGAATTCATTCATTCATTCATTCGTTCGTTCGTTGGTTGGTTGGTTGATTTTAAGAGATTGATTTTGTTGTTTTGATGGGTGAAGCAGTGGGCCCACTTCCCTCACATTCATAATTTTGGTGTTCCTCCCAACAGCAACAACAACACAACCTAGCTTGCTTCTTCAACAGGTCAAACACTCCCTCCTCCTCCTCCTCTTTCTTTCTTTCGTTCTTTCTTTCTTTCTCC

mRNA sequence

ATGTCGTCTTTTTCCCTTCCCACCACCTTCTCCCAACATCCTCCTCCTCCTTCCTCCGACCACCTTTGCTATGTCCATTGCAACGTTTGCGACACAGTTTTGGCGGTGAGTGTTCCTTGTGCTAGTTTGTTCAAAACGGTGACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTCAACATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACTTTCATCATACTGCTTTCTTCTCTCCCAATGCTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTGTGATGAACCAAACCGACGGAATTGATTTGGCAATGGCAACTCGGGTAGGAAACGATGTTCCAAGGCCACCCCCAAGCATAAATAGACGTGAGATAATTGAATTCATTTCTTAAATTTTGTTATGTTTTTACTACAATGTCGTTGTAGTATTAGTAGTGAGTATTCCCGCCTGAAATTTTGTTCTGTTTTTTTGTGTGGTCTTTTCATACAAATTTGGAACTCTGGATAGGTCTAAAATGGGGTTTGGAAGTGAGATTGAAAAGGGGATTGATTTAAATTGTGACACAGCTGCAGAAAAGAAACAGAGAGTACCCTCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGCATCAAGGCTGCCAATCCAGACATCTCTCACAGAGAAGCCTTCAGCGCTGCAGCTAAGAATCAGTGGGCCCACTTCCCTCACATTCATAATTTTGGTGTTCCTCCCAACAGCAACAACAACACAACCTAGCTTGCTTCTTCAACAGGTCAAACACTCCCTCCTCCTCCTCCTCTTTCTTTCTTTCGTTCTTTCTTTCTTTCTCC

Coding sequence (CDS)

ATGTCGTCTTTTTCCCTTCCCACCACCTTCTCCCAACATCCTCCTCCTCCTTCCTCCGACCACCTTTGCTATGTCCATTGCAACGTTTGCGACACAGTTTTGGCGGTGAGTGTTCCTTGTGCTAGTTTGTTCAAAACGGTGACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTCAACATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACTTTCATCATACTGCTTTCTTCTCTCCCAATGCTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTGTGATGAACCAAACCGACGGAATTGATTTGGCAATGGCAACTCGGGTAGGAAACGATGTTCCAAGGCCACCCCCAAGCATAAATAGACGTGAGATAATTGAATTCATTTCTTAA

Protein sequence

MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRREIIEFIS

Homology

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BLAST of Carg21601 vs. NCBI nr
Match: KAG7028372.1 (Protein YABBY 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 5.1e-74
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPV 60
           MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPV
Sbjct: 1   MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPV 60

Query: 61  NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPR 120
           NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPR
Sbjct: 61  NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPR 120

Query: 121 PPPSINRREIIEFIS 136
           PPPSINRREIIEFIS
Sbjct: 121 PPPSINRREIIEFIS 135

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BLAST of Carg21601 vs. NCBI nr
Match: KAG6596843.1 (Protein YABBY 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.4 bits (677), Expect = 2.7e-67
Identity = 126/128 (98.44%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLP 60
           MSSFSLPTTFSQH PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLP
Sbjct: 1   MSSFSLPTTFSQHPPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLP 60

Query: 61  VNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVP 120
           VNMRGGMLLPSPNH HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVP
Sbjct: 61  VNMRGGMLLPSPNHVHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVP 120

Query: 121 RPPPSINR 128
           RPPPSINR
Sbjct: 121 RPPPSINR 128

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BLAST of Carg21601 vs. NCBI nr
Match: XP_022947097.1 (protein YABBY 4-like, partial [Cucurbita moschata])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 3   SFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVN 62
           SFSLPTTFSQH PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVN
Sbjct: 6   SFSLPTTFSQHPPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVN 65

Query: 63  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRP 122
           MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRP
Sbjct: 66  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRP 125

Query: 123 PPSINR 128
           PPSINR
Sbjct: 126 PPSINR 131

[Close]

BLAST of Carg21601 vs. NCBI nr
Match: XP_023539158.1 (axial regulator YABBY 3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPV 60
           MSSFSLPTT    PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTV VRCGHCANLLPV
Sbjct: 1   MSSFSLPTT----PPPPSSDHLCYVHCNICDTVLAVSVPCASLFKTVIVRCGHCANLLPV 60

Query: 61  NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPR 120
           NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEIS+PNPNFVMNQTDGIDL MATRVGN+VPR
Sbjct: 61  NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISDPNPNFVMNQTDGIDLVMATRVGNNVPR 120

Query: 121 PPPSINR 128
           PPPSIN+
Sbjct: 121 PPPSINK 123

[Close]

BLAST of Carg21601 vs. NCBI nr
Match: XP_023539156.1 (axial regulator YABBY 3-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023539157.1 axial regulator YABBY 3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPV 60
           MSSFSLPTT    PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTV VRCGHCANLLPV
Sbjct: 1   MSSFSLPTT----PPPPSSDHLCYVHCNICDTVLAVSVPCASLFKTVIVRCGHCANLLPV 60

Query: 61  NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPR 120
           NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEIS+PNPNFVMNQTDGIDL MATRVGN+VPR
Sbjct: 61  NMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISDPNPNFVMNQTDGIDLVMATRVGNNVPR 120

Query: 121 PPPSINR 128
           PPPSIN+
Sbjct: 121 PPPSINK 123

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BLAST of Carg21601 vs. ExPASy Swiss-Prot
Match: A2X7Q3 (Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.1e-22
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 16  PPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPN--- 75
           P  ++ LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHCANLL VN+R G+LLP+P    
Sbjct: 19  PSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLR-GLLLPAPAPAP 78

Query: 76  ----HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMAT 113
               HF  +     + H  L+E++   P+ +M Q     L+  T
Sbjct: 79  ANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSIT 121

[Close]

BLAST of Carg21601 vs. ExPASy Swiss-Prot
Match: Q6H668 (Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.1e-22
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 16  PPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPN--- 75
           P  ++ LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHCANLL VN+R G+LLP+P    
Sbjct: 19  PSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLR-GLLLPAPAPAP 78

Query: 76  ----HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMAT 113
               HF  +     + H  L+E++   P+ +M Q     L+  T
Sbjct: 79  ANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSIT 121

[Close]

BLAST of Carg21601 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-20
Identity = 66/146 (45.21%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPP---PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANL 60
           MSS S+ ++ +   PP    S+D LCYVHC+ CDTVLAVSVP +SLFKTVTVRCGHC+NL
Sbjct: 1   MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL 60

Query: 61  LPVNM-RGGMLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------D 120
           L V +    +LLPS ++  H+       P   N LEE+ +   N  MN            
Sbjct: 61  LSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHP 120

Query: 121 GIDLAMATRVGNDV------PRPPPS 125
              L MATR G  V      PRPPP+
Sbjct: 121 NEHLVMATRNGRSVDHLQEMPRPPPA 146

[Close]

BLAST of Carg21601 vs. ExPASy Swiss-Prot
Match: Q01JG2 (Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-19
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 5   SLPTTFS---------QHPPP-PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHC 64
           S P TFS         Q PPP    + LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHC
Sbjct: 4   SAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHC 63

Query: 65  ANLLPVNMRGGMLLPSPNHFHH-----TAFFSPNA-HNFLEEI 92
           ANLL VN+R G+LLP+     +      A  SP + H  L+E+
Sbjct: 64  ANLLSVNLR-GLLLPAAASTANQLPFGQALLSPTSPHGLLDEV 105

[Close]

BLAST of Carg21601 vs. ExPASy Swiss-Prot
Match: Q0JBF0 (Protein YABBY 5 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB5 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-19
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 5   SLPTTFS---------QHPPP-PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHC 64
           S P TFS         Q PPP    + LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHC
Sbjct: 4   SAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHC 63

Query: 65  ANLLPVNMRGGMLLPSPNHFHH-----TAFFSPNA-HNFLEEI 92
           ANLL VN+R G+LLP+     +      A  SP + H  L+E+
Sbjct: 64  ANLLSVNLR-GLLLPAAASTANQLPFGQALLSPTSPHGLLDEV 105

[Close]

BLAST of Carg21601 vs. ExPASy TrEMBL
Match: A0A6J1G5H6 (protein YABBY 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451065 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 3   SFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVN 62
           SFSLPTTFSQH PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVN
Sbjct: 6   SFSLPTTFSQHPPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVN 65

Query: 63  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRP 122
           MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRP
Sbjct: 66  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRP 125

Query: 123 PPSINR 128
           PPSINR
Sbjct: 126 PPSINR 131

[Close]

BLAST of Carg21601 vs. ExPASy TrEMBL
Match: A0A6J1KZK7 (protein YABBY 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.0e-61
Identity = 117/133 (87.97%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLP 60
           MSSFSLPTTFSQH PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTVTVRCGHCANLLP
Sbjct: 1   MSSFSLPTTFSQHPPPPPSSDHLCYVHCNICDTVLAVSVPCASLFKTVTVRCGHCANLLP 60

Query: 61  VNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRV 120
           VNMRGGMLLPSPNHFH      T FF+PNAHNFLEEISNPNPNF MNQTDGIDL M TRV
Sbjct: 61  VNMRGGMLLPSPNHFHAFPPSSTPFFTPNAHNFLEEISNPNPNFAMNQTDGIDLTMVTRV 120

Query: 121 GNDVPRPPPSINR 128
           GNDVPR P +INR
Sbjct: 121 GNDVPRAPSNINR 133

[Close]

BLAST of Carg21601 vs. ExPASy TrEMBL
Match: A0A6J1KXR1 (protein YABBY 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.0e-61
Identity = 117/133 (87.97%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLP 60
           MSSFSLPTTFSQH PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTVTVRCGHCANLLP
Sbjct: 1   MSSFSLPTTFSQHPPPPPSSDHLCYVHCNICDTVLAVSVPCASLFKTVTVRCGHCANLLP 60

Query: 61  VNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRV 120
           VNMRGGMLLPSPNHFH      T FF+PNAHNFLEEISNPNPNF MNQTDGIDL M TRV
Sbjct: 61  VNMRGGMLLPSPNHFHAFPPSSTPFFTPNAHNFLEEISNPNPNFAMNQTDGIDLTMVTRV 120

Query: 121 GNDVPRPPPSINR 128
           GNDVPR P +INR
Sbjct: 121 GNDVPRAPSNINR 133

[Close]

BLAST of Carg21601 vs. ExPASy TrEMBL
Match: A0A5D3D7E7 (Protein YABBY 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001460 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.0e-53
Identity = 108/135 (80.00%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPV 60
           MSS SLPTTFSQ PPP  SD LCYVHCN+CDTVLAVSVP  SLFK VTVRCG+CANLLPV
Sbjct: 1   MSSSSLPTTFSQLPPP--SDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGN 120
           +M GGMLLPSP+ F    H T FFSPN HNFLEEISNPNPNF+MNQT+GIDL MATRV N
Sbjct: 61  SMCGGMLLPSPSQFHGFTHSTTFFSPNTHNFLEEISNPNPNFLMNQTEGIDLTMATRVPN 120

Query: 121 DVPRPPPSINRREII 132
           DVPR PP+INRREII
Sbjct: 121 DVPRQPPTINRREII 133

[Close]

BLAST of Carg21601 vs. ExPASy TrEMBL
Match: A0A1S4DXY3 (protein YABBY 4-like OS=Cucumis melo OX=3656 GN=LOC103490918 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPV 60
           MSS SLPTTFSQ PPP  SD LCYVHCN+CDTVLAVSVP  SLFK VTVRCG+CANLLPV
Sbjct: 1   MSSSSLPTTFSQLPPP--SDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGN 120
           +M GGMLLPSP+ F    H T FFSPN HNFLEEISNPNPNF+MNQT+GIDL MATRV N
Sbjct: 61  SMCGGMLLPSPSQFHGFTHSTTFFSPNTHNFLEEISNPNPNFLMNQTEGIDLTMATRVPN 120

Query: 121 DVPRPPPSINR 128
           DVPR PP+INR
Sbjct: 121 DVPRQPPTINR 129

[Close]

BLAST of Carg21601 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-21
Identity = 66/146 (45.21%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPP---PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANL 60
           MSS S+ ++ +   PP    S+D LCYVHC+ CDTVLAVSVP +SLFKTVTVRCGHC+NL
Sbjct: 1   MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL 60

Query: 61  LPVNM-RGGMLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------D 120
           L V +    +LLPS ++  H+       P   N LEE+ +   N  MN            
Sbjct: 61  LSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHP 120

Query: 121 GIDLAMATRVGNDV------PRPPPS 125
              L MATR G  V      PRPPP+
Sbjct: 121 NEHLVMATRNGRSVDHLQEMPRPPPA 146

[Close]

BLAST of Carg21601 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-18
Identity = 62/139 (44.60%), Postives = 79/139 (56.83%), Query Frame = 0


Query: 1   MSSFSLPTTFSQHPPPPS-SDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLP 60
           MSS S P++    P   S SDHLCYV CN C T+LAV+VP  SLFKTVTVRCG C NLL 
Sbjct: 3   MSSMSSPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLS 62

Query: 61  VNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPN---FVMNQ---TDGIDL 120
           VNMR   +LP+ N        H+ F   N  + LEE+ +   N    +MNQ    + I  
Sbjct: 63  VNMR-SYVLPASNQLQLQLGPHSYF---NPQDILEELRDAPSNMNMMMMNQHPTMNDIPS 122

Query: 121 AMATRVGNDVPRPPPSINR 128
            M     +++P+ PP +NR
Sbjct: 123 FMDLHQQHEIPKAPP-VNR 136

[Close]

BLAST of Carg21601 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-13
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 18  SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHT 77
           SS+ +CYVHC+ C T+LAVSVP ASLF  VTVRCGHC NLL +N+  G+ L      H T
Sbjct: 6   SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNI--GVSL------HQT 65

Query: 78  AFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATR--------VGNDVPRPPP 124
           +  +P  H  L+    P+     +     D A ++R        +  + PR PP
Sbjct: 66  S--APPIHQDLQ----PHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPP 105

[Close]

BLAST of Carg21601 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-13
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 18 SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHT 77
          +++ LCY+ CN C+ +LAV+VPC+SLF  VTVRCGHC NL  VNM   +   S  +F  T
Sbjct: 7  ATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQAT 66

Query: 78 AFFSP 83
           +  P
Sbjct: 67 NYAVP 71

[Close]

BLAST of Carg21601 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-13
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 18 SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHT 77
          +++ LCY+ CN C+ +LAV+VPC+SLF  VTVRCGHC NL  VNM   +   S  +F  T
Sbjct: 7  ATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQAT 66

Query: 78 AFFSP 83
           +  P
Sbjct: 67 NYAVP 71

The following BLAST results are available for this feature:

BLAST of Carg21601 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028372.1	5.1e-74	100.00	Protein YABBY 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596843.1	2.7e-67	98.44	Protein YABBY 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947097.1	3.5e-67	99.21	protein YABBY 4-like, partial [Cucurbita moschata]	[more]
XP_023539158.1	2.6e-62	92.13	axial regulator YABBY 3-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023539156.1	2.6e-62	92.13	axial regulator YABBY 3-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235391...	[more]

BLAST of Carg21601 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2X7Q3	6.1e-22	50.00	Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1	[more]
Q6H668	6.1e-22	50.00	Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1	[more]
Q9XFB1	5.7e-20	45.21	Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1	[more]
Q01JG2	4.9e-19	53.40	Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2	[more]
Q0JBF0	4.9e-19	53.40	Protein YABBY 5 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB5 PE=2 SV=1	[more]

BLAST of Carg21601 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5H6	1.7e-67	99.21	protein YABBY 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451065 PE=3 SV=1	[more]
A0A6J1KZK7	7.0e-61	87.97	protein YABBY 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3...	[more]
A0A6J1KXR1	7.0e-61	87.97	protein YABBY 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3...	[more]
A0A5D3D7E7	7.0e-53	80.00	Protein YABBY 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443...	[more]
A0A1S4DXY3	1.1e-50	79.39	protein YABBY 4-like OS=Cucumis melo OX=3656 GN=LOC103490918 PE=3 SV=1	[more]

BLAST of Carg21601 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00180.1	4.1e-21	45.21	Plant-specific transcription factor YABBY family protein	[more]
AT2G45190.1	4.2e-18	44.60	Plant-specific transcription factor YABBY family protein	[more]
AT1G08465.1	5.3e-13	40.35	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	5.3e-13	49.23	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	5.3e-13	49.23	plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 18..92 e-value: 3.3E-27 score: 96.1
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 1..128
None	No IPR available	PANTHER	PTHR31675:SF0	PROTEIN YABBY 4	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21601-RA	Carg21601-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0010154	fruit development
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:2000024	regulation of leaf development
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding