Carg21577 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21577
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr18: 10150213 .. 10152103 (-)
RNA-Seq Expression	Carg21577
Synteny	Carg21577

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGATAAGAAAGCTTTGATGCAATGGGAGAAGAGAAGAGAAGAGACCACTGACAAAGCTCTTGGAGGGACAGAGGTTTTAAAATACACAGCCACGTCAAAAGGACAAATATGGTGGAAGATACCATAAGGATACAGGTATTGACTTTAGGTCATGAAAAAAATGAACTTTTTATAATCTATTCAACTACCAAGTTGCCTTATTTTGAATTAGTTCATAATCTTTGGTTGTTTTCTCATTAGTCATTTTTCATGCGCGAAAAAAAAAAAAAAAAAAAAGGAAAAACCATGTTTTAATCGTTAGGGTTTTGTAATTAGTTAAAACAGAAATTTTAATGGTAGCTAACATGGTAAATCCTCAAATGTCGAACAAAGGACACCAAAAGAAAAAGGAGTTGAGCCTCGATTAAGGGGAGGTGTACTTTGTTTGTTCGATGGGAAGTGTTGGATGATGAAAGTCACACATCGGCTAATTTAGGGAATGGTCATGAGTTTATAAGTGAGAAACACTATCTCCAGGTACGATGCTTTTTGCGAAATGTTATGTTCAAAGTGGACAAATCATACCATTGTAGAGAGTCAAATAATGTGCGACAAATTTTTAAACTTTTAATTTTACATGCATAAGATTTATAGTTAAATAGAAACAAATTTAAAATATCTTAAAAAATCAAATTTATAATATAACCATAAATGTGAACACAAGTACGGACAAAAAGTCACAATAATTACAAGTGAATGAAACGTGTAGAAAAGAAAAAGGGAAGGTATTGGTTTTGACGCGGTTGGCGTGTGAAAAAAACTAACATCGAAATCAGTGTAACCATCGAAACGAAGAACTCAAGGGTAGAGACCGGTCTTCCTGATCTACCGCCACAAGCACGTATTTTAGTGGTCCGATTTATAACCCATGTTCTTCGTAAGTATTCCATTTTTAAATCTACCACGTATATTGTCAAAACCTGTAGTTAAGATTGAAAAGAATGGAATCGATTACGATTACGATTACTCTAGAACATGAAGAATAATCCACTTTTATGACAAGGGAACCAGCTAAACTTTTTAAACAAGGTAGATTTAAAAAAAAAAATACTTAAAATTTGTAAAACACTTTTGCTAACATTCATGCTAGAAACGATTTCATTGTTTATAGTAATTTCATTAATGTACTTTCATATTATTTAGTGCTTGAATCTAACCAATACAATAATTTAGTCCTAATATTTTAAAATTTGTGACAAATTAATCCCACTATAAAATAATACCATCAAAATTATAATTATCAGTTTTGTTATGCAGCAACTCAATTTTTGTTGTCTATAAACAAAATAGGTCTTGAATCGGTAAAAAATTTCATTAAATCTTAGTACAAAACTTAAATCATTATAAACTAAAATTCAAGAATTTAAATAGTATTTCAAGAACGAAGTGTCATACCTAAGAGATTTTAAGGAAAAGTTGGTATCACCCAAGATGAAAATCTGCACACGTTAGCAGGTGGTGAAAACCTATCCCAGCTGGAAAATTAAACAAGTGAATAGGTGAAATAATGATACAAAAAACCATTATTAGCTTTTTATTGAAAGACTTTTTTTCACTTCTGATTTCAAGGGAAGAGATGATTGGGTCAAGTACGATACCTACCGAGTCTTGCTGTAAATGCGAATCCGAGTGTCTAGAAAGCTGAAGAATTTTCTGAATGACCCTTCAGATGAATAAAGCATAATAGCAATTTCGTAGATATTGCCTTGCTTTAGAACCACCAAAACACACAAAAGATTGCCAAAGACCTGAAATATGAGGGGGCCCATGCTATTGACGACGAAGGGGAAATCCATCGGATTGACTTCCTCCCCAAGCGAATAGCGGTGAAGTACAGGAATTAG

mRNA sequence

ATGGCGGCTGATAAGAAAGCTTTGATGCAATGGGAGAAGAGAAGAGAAGAGACCACTGACAAAGCTCTTGGAGGGACAGAGAACCACCAAAACACACAAAAGATTGCCAAAGACCTGAAATATGAGGGGGCCCATGCTATTGACGACGAAGGGGAAATCCATCGGATTGACTTCCTCCCCAAGCGAATAGCGGTGAAGTACAGGAATTAG

Coding sequence (CDS)

ATGGCGGCTGATAAGAAAGCTTTGATGCAATGGGAGAAGAGAAGAGAAGAGACCACTGACAAAGCTCTTGGAGGGACAGAGAACCACCAAAACACACAAAAGATTGCCAAAGACCTGAAATATGAGGGGGCCCATGCTATTGACGACGAAGGGGAAATCCATCGGATTGACTTCCTCCCCAAGCGAATAGCGGTGAAGTACAGGAATTAG

Protein sequence

MAADKKALMQWEKRREETTDKALGGTENHQNTQKIAKDLKYEGAHAIDDEGEIHRIDFLPKRIAVKYRN

Homology

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BLAST of Carg21577 vs. NCBI nr
Match: KAG7013035.1 (hypothetical protein SDJN02_25791, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MAADKKALMQWEKRREETTDKALGGTENHQNTQKIAKDLKYEGAHAIDDEGEIHRIDFLP 60
          MAADKKALMQWEKRREETTDKALGGTENHQNTQKIAKDLKYEGAHAIDDEGEIHRIDFLP
Sbjct: 1  MAADKKALMQWEKRREETTDKALGGTENHQNTQKIAKDLKYEGAHAIDDEGEIHRIDFLP 60

Query: 61 KRIAVKYRN 70
          KRIAVKYRN
Sbjct: 61 KRIAVKYRN 69

The following BLAST results are available for this feature:

BLAST of Carg21577 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013035.1	1.8e-30	100.00	hypothetical protein SDJN02_25791, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg21577 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21577 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21577 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21577-RA	Carg21577-RA	mRNA