Carg21560 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21560
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 10257237 .. 10260148 (-)
RNA-Seq ExpressionCarg21560
SyntenyCarg21560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTAGTTTGGTCGCTCTTCTGGATTTGAAATTTTTAGGGTACAGCCGGCTGTTCAGATTTGGGGGTTCACTTGAAAACTTCATAGGTTATTCATATTTAGGGGTTAAAAAATAATTCAAGTGAACAAAATAAAATGATCCAGTGGTCAAAAGAAGCTAAAAAGGATATAATAAGGCATTCCAATTGATAGCATCCTCTGATTAAGTTATCAATTGTGACATATATGTAGATTCTTCTCTATACAAACGTTTTACCGATTTGAACTTCAGTTCTCAGTGTTTTATGTTTTCAATGTGTGAATTAACCCTGCAAATTTAAGGACGAACTTTGTTTTATTTTTTAATAAGTTTAGAGTTAATTTTTTTGACATTTTCTCTGCATTACATTTTTTTTAAAGGTAGAAGAAAGAATTTGGTCAGCTGAAGAGGAAAAGGCAGAGTCTAAGAAAGAATTTGGTGCAGAGTCTAAAAAGATGTAAGTTTCTGATGGAAGTGAATTTCAAATGTGAAAATTCCTAGAAAGTTTTTGTCTTGCTAGCTTGTGTCAGGTGAAAAAATGTGGAAAAATTTTCAAAGTTGATATTTGTGCACGAGAGATATAGATTGGCCTATCAAATTTGGATCATGTAAATATTATTTTAGATGATTCTATTCACACACTTCAATTCTTAAGAATAACACGCTAGAATCAGTTCTATTTACAGGTCAAACTTTAACAAAAAAATGTTCATGGTTTCAAATTATCCACGTCTCATTGGTTTGTTATTATTGCACATATTTCCTTTGCTAATGCAGAAGATTTTGGTTAGTAACTATGTTGTGGAAATTTCAGATGGAAATGGTGGACATTATGGAGATAAATAAAGTTGAGGTCATTCTACGAGGAATCCCACTCCGATTGCTACTTTGAACACTCCATAATGTAAGAATTTTCTATTTGACATCATGAACTACCATATATCCGGTCTGGTTCTCGCAGGAATTACATTTTTGGCAATGTTGTGGTCCTAATAAGGTTAGATTCCTAAGTTTAACTTTTATTATGTCTTTGTTTTTCTTTTTTGATGTTCTTTGTGCTTCCGATATCACGTTTTTATTCTTTTAAACTACAATAAAGGATTTAATGAATGTTAAAGTCAAAGAGGTTCATGAGTAAGGAATTAAATTGCATCTTTTGTTTTATGAACTTTTTAGGTAGTTATGAATAGATCCTTGTGAAGCTTTCATTAAGATCAAATAAAAGAATACAAGAGGAACACTAGAAAACCATCCCAAGAGGAACCCAATTGACCTATAAAAGTGCTCAAATCAAGCAAAATAAAACCTTAAGGACAGTTTAAAAGAAACGGGTGTCATGTCCCAAGAGGATCCCAATTGACCTAAAAAGATACTCCAATTAAACAAAATAAGATTTAGAGGTAATTACAAAATATTATACACACTCCCCAGAGGTGTGATCTAATAAGGCTTCACTGCACCCCAAGAACTTCCAATCCTTTCCTATTGTTTCTTTCAACATAAAGATTCCATAAAATTTCAAGAAAGTGGATGAAGAAGAAGCTCTTCCACCGTAGGAGAGATGATCCAGATATTTTGATATGAACTAAGAGACATCAATCATACAATATGCTTCAATGAAGATGTGAAGAAAATATTGTTGAAATTATCAAAAGATATTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTCATGTTATAAATTTTGGGTAGATTATAATTTAGAATAATTTAGATTTATTGTATTTCATTAATGTATTTTAAGACTTTTTATTTACTTTAGGTTACAATACATAATTGGTTATTTATGAACATTCAGTTTGTAGGTAGACTTGAAAAATATAGTAAAAGGAGCATTTGTGCTTTCTTTAGCCAATGGCTAAGTTTCTTTGCGATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCAACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGCAAGTGTTCTTTGCCTTGAGATATTTGATTAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTAGGGTGATTCAAATCTCAAACAATGTTCTTGTCTTGAGATATTCGATCAACAAGGTAGTCCGACCGATCATGTTGATCGAATAATATCCGATCGGATTACCTTGTTGATCGAATATCTTAAGACAAGAACATTGTTTGAGATTTGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCTATCTCAAGACACTTGCTTGAGATTTGAATCACTCCACAAGCAAGATTGATCATATCGAGCTTGAATGATTCTACATGCAATCTAAACTACATAGAATTGCAAATAAACTTAGTTATTGGCTAAAGAAAGCACAAATGCTCCTTTTACTATATTTTTCAAGTCTCCCTACAAATACAACATACATGGCTTTATATAGTCTCATAATGAAACTACTAAAGTCATTCCAAGAGTTGTAACATTCATACTTAATGACCATAATTAACCATTATGTAATTGTAACCTAAAGTAAATAAAAAGTCTTAAAATACATTAATAAAATACAATAAATCTAAATTATTCTAAATTGTAATCCACCCAAAATTTATAACATAAAACTTCATTCTTCTTCAATGTGGCATGAATTGAAATATCTTTTGATGATTTCAACAATATTTTCTTCACATTCTTCATTGAAACATATTGTATGATTGATGTCTCTTGATTCATATCATCCTTAGTCATTCCTTATAAAAGATACAACACTAGGGCCTATTCTAAAGTGGTGAATTCCTTTTTGTGTACAGAGTTTTTGTGATTTTTTTGAATTAGAGATAATGATCAAGCAACTAAGCAAGGGCAAGGAGGTTTGTTTTACGGAAAATGA

mRNA sequence

ATGCGTAGTTTGGTCGCTCTTCTGGATTTGAAATTTTTAGGGTACAGCCGGCTGTTCAGATTTGGGGGTTCACTTGAAAACTTCATAGAAGAAAGAATTTGGTCAGCTGAAGAGGAAAAGGCAGAGTCTAAGAAAGAATTTGGTGCAGAGTCTAAAAAGATAGATAATGATCAAGCAACTAAGCAAGGGCAAGGAGGTTTGTTTTACGGAAAATGA

Coding sequence (CDS)

ATGCGTAGTTTGGTCGCTCTTCTGGATTTGAAATTTTTAGGGTACAGCCGGCTGTTCAGATTTGGGGGTTCACTTGAAAACTTCATAGAAGAAAGAATTTGGTCAGCTGAAGAGGAAAAGGCAGAGTCTAAGAAAGAATTTGGTGCAGAGTCTAAAAAGATAGATAATGATCAAGCAACTAAGCAAGGGCAAGGAGGTTTGTTTTACGGAAAATGA

Protein sequence

MRSLVALLDLKFLGYSRLFRFGGSLENFIEERIWSAEEEKAESKKEFGAESKKIDNDQATKQGQGGLFYGK
Homology
[Close]
BLAST of Carg21560 vs. NCBI nr
Match: KAG7013052.1 (hypothetical protein SDJN02_25808, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.4e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRSLVALLDLKFLGYSRLFRFGGSLENFIEERIWSAEEEKAESKKEFGAESKKIDNDQAT 60
          MRSLVALLDLKFLGYSRLFRFGGSLENFIEERIWSAEEEKAESKKEFGAESKKIDNDQAT
Sbjct: 1  MRSLVALLDLKFLGYSRLFRFGGSLENFIEERIWSAEEEKAESKKEFGAESKKIDNDQAT 60

Query: 61 KQGQGGLFYGK 72
          KQGQGGLFYGK
Sbjct: 61 KQGQGGLFYGK 71

The following BLAST results are available for this feature:
BLAST of Carg21560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013052.13.4e-29100.00hypothetical protein SDJN02_25808, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21560 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21560-RACarg21560-RAmRNA