Carg21540 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21540
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 10386507 .. 10386910 (-)
RNA-Seq ExpressionCarg21540
SyntenyCarg21540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCCCATTTGCAGTTCTCCTTGGTGGAATCCTGGCTTGGTATGATCTTGAGCTATTGAAAATCAAACAATTTGATAGCTTGTGGCTTTGTTTTCTCTCTCGCATGAAGTAAGGTATCAATCAACCATATCCATCTCCTCTATGTAGATTTGTACATCGAATCCTAGAGAAGTCTCTGAGTTTTCTTCTTGTGAACATATTAAACAGCTAAATTATGTGGTGTATCTACATCTGTACTTATTATTGTGTAGGATTTGAAACGTCCAAATCGAATCACTCAATTCTGAGTAAATGAATAAAATGCGATTCAGCCATTTGTTCTATGATCACAGACTTGGGAGGCATCATCCAATGGAAATAGAGCACGTCGGACAGCAAAGGTACATTTCTTAGAGCATGTAATT

mRNA sequence

GTGCCCATTTGCAGTTCTCCTTGGTGGAATCCTGGCTTGGATTTGAAACGTCCAAATCGAATCACTCAATTCTGAGTAAATGAATAAAATGCGATTCAGCCATTTGTTCTATGATCACAGACTTGGGAGGCATCATCCAATGGAAATAGAGCACGTCGGACAGCAAAGGTACATTTCTTAGAGCATGTAATT

Coding sequence (CDS)

GTGCCCATTTGCAGTTCTCCTTGGTGGAATCCTGGCTTGGATTTGAAACGTCCAAATCGAATCACTCAATTCTGA

Protein sequence

VPICSSPWWNPGLDLKRPNRITQF
Homology
[Close]
BLAST of Carg21540 vs. NCBI nr
Match: KAG7013071.1 (hypothetical protein SDJN02_25827, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  VPICSSPWWNPGLDLKRPNRITQF 25
          VPICSSPWWNPGLDLKRPNRITQF
Sbjct: 1  VPICSSPWWNPGLDLKRPNRITQF 24

The following BLAST results are available for this feature:
BLAST of Carg21540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013071.11.1e-06100.00hypothetical protein SDJN02_25827, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21540-RACarg21540-RAmRNA