Carg21436 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21436
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 6066186 .. 6066894 (-)
RNA-Seq ExpressionCarg21436
SyntenyCarg21436
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTTTCTCGCTTGTTAGTCAAACCCTTTTAGATATTTCGGAAAAACTATTATTATTTTTTTTGTTCCTCTTTTCTTGTCTATGGAAGTTGGTGTTAAAGCTATATCAGCTTGAGGCTAGTGTAATAGACGGCTTCCTTGGCATTCCTAATCCAGTGGGAGGCGGGATATGGCCAGACTATAAGAAAAAGCTACGAATGTATGTGATGGACAGATTCCATCTCGAGAGCACCAGTAGGCTATATCCGGCCGTTCTTTTCAACGGTCTTGTTAGGAACGAATGGTTCGGATGAAATTGGAAATATATATATATATATTTTTTTTGTAATTAGGGAGTGGACCCAGATTAAGATTGTCTTGATGTTCATCCGGTGGAGATTTGGAATTGGGTGTGTTGGGTAAGGGTGTGACGCCATTGTGGATGCAGGTGCAGCACAGCTTGGAAGATTGACGCCATCCCTTTCGTCATGGGAACGACTTCATCTGCTACCCCAACAGTACTCACATTAATCTCCCTCTCTTTCCCTTTTCCAATCAGTCCCCACGATTTTCCTCTCCCTTTCTCTCTCTTCAATTCCCCATTTCTGCTCCATAGGAAGGAGTCCTAGCTTTTTGGGTTCCTGAAAGCGACGAACAAACTCCTGGTTGCCGCCACTTCTGGGTTTGCTTTTTGATTTCTGTTGCTTCCTCGTTAGGGTATCCCTAA

mRNA sequence

ATGGACTTGGTGTTAAAGCTATATCAGCTTGAGGCTAGTGTAATAGACGGCTTCCTTGGCATTCCTAATCCAGTGGGAGGCGGGATATGGCCAGACTATAAGAAAAAGCTACGAATGTATGTGATGGACAGATTCCATCTCGAGAGCACCAGTAGGCTATATCCGGCCGTTCTTTTCAACGGTCTTGTTAGGAACGAATGGTGCAGCACAGCTTGGAAGATTGACGCCATCCCTTTCGTCATGGGAACGACTTCATCTGCTACCCCAACAGAAGGAGTCCTAGCTTTTTGGGTTCCTGAAAGCGACGAACAAACTCCTGGTTGCCGCCACTTCTGGGTTTGCTTTTTGATTTCTGTTGCTTCCTCGTTAGGGTATCCCTAA

Coding sequence (CDS)

ATGGACTTGGTGTTAAAGCTATATCAGCTTGAGGCTAGTGTAATAGACGGCTTCCTTGGCATTCCTAATCCAGTGGGAGGCGGGATATGGCCAGACTATAAGAAAAAGCTACGAATGTATGTGATGGACAGATTCCATCTCGAGAGCACCAGTAGGCTATATCCGGCCGTTCTTTTCAACGGTCTTGTTAGGAACGAATGGTGCAGCACAGCTTGGAAGATTGACGCCATCCCTTTCGTCATGGGAACGACTTCATCTGCTACCCCAACAGAAGGAGTCCTAGCTTTTTGGGTTCCTGAAAGCGACGAACAAACTCCTGGTTGCCGCCACTTCTGGGTTTGCTTTTTGATTTCTGTTGCTTCCTCGTTAGGGTATCCCTAA

Protein sequence

MDLVLKLYQLEASVIDGFLGIPNPVGGGIWPDYKKKLRMYVMDRFHLESTSRLYPAVLFNGLVRNEWCSTAWKIDAIPFVMGTTSSATPTEGVLAFWVPESDEQTPGCRHFWVCFLISVASSLGYP
Homology
[Close]
BLAST of Carg21436 vs. NCBI nr
Match: KAG7019435.1 (hypothetical protein SDJN02_18396, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.5 bits (698), Expect = 9.3e-70
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MDLVLKLYQLEASVIDGFLGIPNPVGGGIWPDYKKKLRMYVMDRFHLESTSRLYPAVLFN 60
           MDLVLKLYQLEASVIDGFLGIPNPVGGGIWPDYKKKLRMYVMDRFHLESTSRLYPAVLFN
Sbjct: 1   MDLVLKLYQLEASVIDGFLGIPNPVGGGIWPDYKKKLRMYVMDRFHLESTSRLYPAVLFN 60

Query: 61  GLVRNEWCSTAWKIDAIPFVMGTTSSATPTEGVLAFWVPESDEQTPGCRHFWVCFLISVA 120
           GLVRNEWCSTAWKIDAIPFVMGTTSSATPTEGVLAFWVPESDEQTPGCRHFWVCFLISVA
Sbjct: 61  GLVRNEWCSTAWKIDAIPFVMGTTSSATPTEGVLAFWVPESDEQTPGCRHFWVCFLISVA 120

Query: 121 SSLGYP 127
           SSLGYP
Sbjct: 121 SSLGYP 126

The following BLAST results are available for this feature:
BLAST of Carg21436 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019435.19.3e-70100.00hypothetical protein SDJN02_18396, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21436 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21436 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21436 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21436-RACarg21436-RAmRNA