Carg21396 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21396
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 6368513 .. 6368964 (-)
RNA-Seq ExpressionCarg21396
SyntenyCarg21396
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGGATTCACATCTTTTCGGATGATGAAATTGGAGACGGAATCTGCGTACCGACAGGTTATGATACTTCGATTTGCAGTCACTCTTATCTAAAATTTCTTTGCATAATCAGATCGAATCATCAGATGTGATCCGCCAGTGATCAAAATCGTTCCGTTTCGACTCTGATTTCTTCGCTTTAATCTTTTCTCTTCATTCTGTTTCTGAGGATTTCGTTTCGTTTCCACTGCTGAATCTTTGATTTGCCTGTTTCGTTTTTGCGGCATACAGAAATGATTCGTGCATTTGCTGAACTTGTTTGTTTCTTTTTTTTTCTTTAGATGAATACGTTATAATGATTCTATTGCGTAGGCCTGAAATCCATTTTCGGAAAAAATTGTTTTCTTTTGGTGTCTCTGTTCTCTTAATTGCGCCCTCCATTCCCGTTTCTTCAGGCTTCAACCCCTAA

mRNA sequence

ATGCTTTGGATTCACATCTTTTCGGATGATGAAATTGGAGACGGAATCTGCGTACCGACAGATGAATACGTTATAATGATTCTATTGCGTAGGCCTGAAATCCATTTTCGGAAAAAATTGTTTTCTTTTGGTGTCTCTGTTCTCTTAATTGCGCCCTCCATTCCCGTTTCTTCAGGCTTCAACCCCTAA

Coding sequence (CDS)

ATGCTTTGGATTCACATCTTTTCGGATGATGAAATTGGAGACGGAATCTGCGTACCGACAGATGAATACGTTATAATGATTCTATTGCGTAGGCCTGAAATCCATTTTCGGAAAAAATTGTTTTCTTTTGGTGTCTCTGTTCTCTTAATTGCGCCCTCCATTCCCGTTTCTTCAGGCTTCAACCCCTAA

Protein sequence

MLWIHIFSDDEIGDGICVPTDEYVIMILLRRPEIHFRKKLFSFGVSVLLIAPSIPVSSGFNP
Homology
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BLAST of Carg21396 vs. NCBI nr
Match: KAG7019475.1 (hypothetical protein SDJN02_18436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MLWIHIFSDDEIGDGICVPTDEYVIMILLRRPEIHFRKKLFSFGVSVLLIAPSIPVSSGF 60
          MLWIHIFSDDEIGDGICVPTDEYVIMILLRRPEIHFRKKLFSFGVSVLLIAPSIPVSSGF
Sbjct: 1  MLWIHIFSDDEIGDGICVPTDEYVIMILLRRPEIHFRKKLFSFGVSVLLIAPSIPVSSGF 60

Query: 61 NP 63
          NP
Sbjct: 61 NP 62

The following BLAST results are available for this feature:
BLAST of Carg21396 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019475.12.8e-27100.00hypothetical protein SDJN02_18436, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21396 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21396 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21396 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21396-RACarg21396-RAmRNA