Carg21367 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21367
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	High mobility group B protein 2
Location	Carg_Chr01: 13148756 .. 13150675 (+)
RNA-Seq Expression	Carg21367
Synteny	Carg21367

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGATTTCTAGGCACGTGCGAATCGCATGACAGTATAACGTGCGTGCAAAGGAATAGAAACGCTGGAGCACGAAGGCACCGCAAATGGGCCCTTTCTATGGATATGGGCTTTTTTGTAATTTTCTGGCCCACATCATTATACTCGTTTTCACTCTGGGCTTGATTGTTTCGAGCTTCTTTTGAGGCCCAACATTGGAAAAACGGGCTTTCAGAGATGCTCTACACTTGCCCCTCGCACCGCCAACGAATATGAGCAGTAGGATCTCGATGACGTGGACCAATGGCATAAGAGTGCGCGGATTATTGAGTTGGCAATAAATGAAAAATCCCGCCGAAATTCCTGCTTGGTTTCATTTCGTGCGCAATTGAATTTCAATTTGCCCTCCTGTCCTTCAAGGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACACGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGTACGTTTCATCCATCTCCTTCGATTTCTGATGCAATTTCATGTGCTTTCTTTCTTTCATCTCCAAATTGTTGCTGATCTGATCTTATTCCTGCAGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGTGAGTTTTTATTGTCCCTTCCATGTTATTTTCTGTCTGATGTGTTTGTTTTCCACTTTTAATCGGTTCATATCACCAGTGTTAAAGTAGGCGTTAACCCTTTTTGTTCTGATCGATCGTTTTTGCTTATTTGTTCATTTGCTGTAGGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGTAATTTTTTTTTTATAAGATGGCTGAATTACTCGCTTATCTACAAATTATTTCATTTATACGGCTGTGGAGTTGAGTAATATGCGAGCTTGGATGGAAAAACTAGGAACTTGTTTATGGTTTGTGACAAAATATATATTCAAAATCATTATAATTACCTTGTGGATATATTAGCGAGTGTCAAAACACCCGACTTTCAACGAAAAGATTCCTCTGATTTGTGTATTTTACTTTAGCAGTGTTTTTGTTCCTGTAAGTCGATTATGTTTCTTATCTCTATGCTGTCGTGTTGTTGTTGTCGTCGTTTTTTTTTTTTTTTTTTTTTTTTTACAATTAAAGGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTAAGTTATTTCCCGTTGTACTTTTTGTTATTTGTCTCCATTCAACTTTTGCAATTCATTCTATGGTAATGTGTGTTGACAATTGACTTGCAAATGGTTCGATCAGGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGTACGTGATTGCCATCGTAGTGTTTCTTAACTTCACCTGGTATTATGAACTATGTCTGAATTGCTGTTTATAATATCAGGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGTATTAATATCCTCTTGGAAAAGTTTCTGAAGCATTCATATTGCAGCTGTATATTACTGTGTGAATTCAATTTTCACTCCCATGTGAGTTCAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGTAGTTTGTTTAAGGATTGCTGTAAAAGTAGACGTTTTGATGTGGATGTTTGTTTGAGATTACCATTCCTTTCATTTGATATTGCAGGAGGAGGATGAGGAGTGA

mRNA sequence

ATGCAGGGATTTCTAGGCACGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACACGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGTAGTTTGTTTAAGGATTGCTGAGGAGGATGAGGAGTGA

Coding sequence (CDS)

ATGCAGGGATTTCTAGGCACGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACACGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGTAGTTTGTTTAAGGATTGCTGAGGAGGATGAGGAGTGA

Protein sequence

MQGFLGTTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE

Homology

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BLAST of Carg21367 vs. NCBI nr
Match: KAG7037955.1 (hypothetical protein SDJN02_01588, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 9.6e-101
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MQGFLGTTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60
           MQGFLGTTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK
Sbjct: 1   MQGFLGTTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60

Query: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120
           PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA
Sbjct: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120

Query: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180
           AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD
Sbjct: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180

Query: 181 DEAGDDDGSEEVVCLRIAEEDEE 204
           DEAGDDDGSEEVVCLRIAEEDEE
Sbjct: 181 DEAGDDDGSEEVVCLRIAEEDEE 203

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BLAST of Carg21367 vs. NCBI nr
Match: KAG6608639.1 (hypothetical protein SDJN03_01981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 195/203 (96.06%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MQGFLGTTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60
           MQGFLGTTELSLSSSPRTASLLLSH QLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK
Sbjct: 1   MQGFLGTTELSLSSSPRTASLLLSHPQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60

Query: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120
           PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA
Sbjct: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120

Query: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180
           AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD
Sbjct: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180

Query: 181 DEAGDDDGSEEVVCLRIAEEDEE 204
           DEAGDDDGSEE       EEDEE
Sbjct: 181 DEAGDDDGSEE-------EEDEE 196

[Close]

BLAST of Carg21367 vs. NCBI nr
Match: XP_022940991.1 (HMG1/2-like protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 6.9e-67
Identity = 148/155 (95.48%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ESEKSTSEVNGDDEAGDDDGSEE       EEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEE-------EEDEE 148

[Close]

BLAST of Carg21367 vs. NCBI nr
Match: XP_022940992.1 (HMG1/2-like protein isoform X2 [Cucurbita moschata] >XP_022981798.1 HMG1/2-like protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-66
Identity = 147/155 (94.84%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ESEKSTSEVNGDDEAGDDDGSE        EEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSE--------EEDEE 147

[Close]

BLAST of Carg21367 vs. NCBI nr
Match: XP_022981797.1 (HMG1/2-like protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 4.5e-66
Identity = 146/155 (94.19%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ESEKSTSEVNGDDEAGDDDGSEE       EE+E+
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEE-------EEEED 148

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BLAST of Carg21367 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 105/149 (70.47%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAV-KKGAAKK-----GSKKAGKDPNKPKRPASAFFVFMEEFRK 108
           MKGGKSKTES +   KLAV KKGAA K     G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 109 KFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGA 168
            F++E+P NKAVSAVGKAAG KWK+MSDAEKAPYVAK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 169 NAAEGDESEKSTSEVNGDDEAGDDDGSEE 192
              + +ESEKS SEVN +D+  +  G EE
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEE 149

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BLAST of Carg21367 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 99/155 (63.87%), Postives = 117/155 (75.48%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ES+KS SEVN +D+A  +DGSEE       EED++
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEE-------EEDDD 141

[Close]

BLAST of Carg21367 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 96/144 (66.67%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAA-KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEE 108
           MKGGKSK +S     KLAVKK AA  K +KKA KDPNKPKRP SAFFVFME+FRK + E+
Sbjct: 1   MKGGKSKAKS---DNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 109 NPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEG 168
           +PNNK+V+ VGKA G KWK ++ AEKAP+++KA+KRK EYEKN++AYNKKQA+G  AAE 
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 169 DESEKSTSEVNGDDEAGDDDGSEE 192
           +ES+KS SEVN DDE  D DGS E
Sbjct: 121 EESDKSRSEVNDDDE--DQDGSGE 137

[Close]

BLAST of Carg21367 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-36
Identity = 99/157 (63.06%), Postives = 118/157 (75.16%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
            +ES+KS SEVN +D+A  +DGSEE       EED++
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEE-------EEDDD 144

[Close]

BLAST of Carg21367 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-31
Identity = 97/167 (58.08%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVK-KGAAK--KGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 108
           MKG KSK  + K  AKLAVK KGA K  KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSK-GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 109 SEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANA 168
            E+NP NK+V+AVGKAAG +WKS+S+++KAPYVAKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 169 A--------EGDESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           A        + +ES+KS SEVN +D   D++GSEE       E+D+E
Sbjct: 121 APAKEEEEEDEEESDKSKSEVNDED---DEEGSEE------DEDDDE 157

[Close]

BLAST of Carg21367 vs. ExPASy TrEMBL
Match: A0A6J1FJX2 (HMG1/2-like protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.4e-67
Identity = 148/155 (95.48%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ESEKSTSEVNGDDEAGDDDGSEE       EEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEE-------EEDEE 148

[Close]

BLAST of Carg21367 vs. ExPASy TrEMBL
Match: A0A6J1J327 (HMG1/2-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.8e-67
Identity = 147/155 (94.84%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ESEKSTSEVNGDDEAGDDDGSE        EEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSE--------EEDEE 147

[Close]

BLAST of Carg21367 vs. ExPASy TrEMBL
Match: A0A6J1FL59 (HMG1/2-like protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.8e-67
Identity = 147/155 (94.84%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ESEKSTSEVNGDDEAGDDDGSE        EEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSE--------EEDEE 147

[Close]

BLAST of Carg21367 vs. ExPASy TrEMBL
Match: A0A6J1IV01 (HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.2e-66
Identity = 146/155 (94.19%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ESEKSTSEVNGDDEAGDDDGSEE       EE+E+
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEE-------EEEED 148

[Close]

BLAST of Carg21367 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.6e-53
Identity = 131/156 (83.97%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAA-KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEE 108
           MKGGKSK+ES K   KLAVKKGAA KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKF+EE
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 109 NPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEG 168
           NPNNKAVSAVGKAAG KWKSMSDAEKAPY+AKADKRKVEYEKNMKAYNKKQASGANAA+ 
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 169 DESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           DESEKS SEVN DDE G D+GSEE       E+D+E
Sbjct: 121 DESEKSMSEVN-DDEDG-DEGSEE-------EDDDE 147

[Close]

BLAST of Carg21367 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-39
Identity = 97/144 (67.36%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEV 193
           ES+KS SEVN +D+A  +DGSEEV
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEEV 137

[Close]

BLAST of Carg21367 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 156.0 bits (393), Expect = 3.2e-38
Identity = 96/145 (66.21%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEE 192
            +ES+KS SEVN +D+A  +DGSEE
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEE 139

[Close]

BLAST of Carg21367 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 156.0 bits (393), Expect = 3.2e-38
Identity = 96/145 (66.21%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEE 192
            +ES+KS SEVN +D+A  +DGSEE
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEE 139

[Close]

BLAST of Carg21367 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 154.8 bits (390), Expect = 7.2e-38
Identity = 99/155 (63.87%), Postives = 117/155 (75.48%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
           ES+KS SEVN +D+A  +DGSEE       EED++
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEE-------EEDDD 141

[Close]

BLAST of Carg21367 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-37
Identity = 99/157 (63.06%), Postives = 118/157 (75.16%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEEVVCLRIAEEDEE 204
            +ES+KS SEVN +D+A  +DGSEE       EED++
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEE-------EEDDD 144

The following BLAST results are available for this feature:

BLAST of Carg21367 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037955.1	9.6e-101	100.00	hypothetical protein SDJN02_01588, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6608639.1	1.5e-93	96.06	hypothetical protein SDJN03_01981, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940991.1	6.9e-67	95.48	HMG1/2-like protein isoform X1 [Cucurbita moschata]	[more]
XP_022940992.1	2.0e-66	94.84	HMG1/2-like protein isoform X2 [Cucurbita moschata] >XP_022981798.1 HMG1/2-like ...	[more]
XP_022981797.1	4.5e-66	94.19	HMG1/2-like protein isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg21367 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	1.9e-43	70.47	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	1.0e-36	63.87	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	1.0e-36	66.67	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49596	2.3e-36	63.06	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P27347	2.9e-31	58.08	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of Carg21367 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJX2	3.4e-67	95.48	HMG1/2-like protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=...	[more]
A0A6J1J327	9.8e-67	94.84	HMG1/2-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 ...	[more]
A0A6J1FL59	9.8e-67	94.84	HMG1/2-like protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=...	[more]
A0A6J1IV01	2.2e-66	94.19	HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 ...	[more]
A0A1S3BW96	3.6e-53	83.97	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]

BLAST of Carg21367 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.3	3.8e-39	67.36	high mobility group B3	[more]
AT1G20693.2	3.2e-38	66.21	high mobility group B2	[more]
AT1G20693.3	3.2e-38	66.21	high mobility group B2	[more]
AT1G20696.1	7.2e-38	63.87	high mobility group B3	[more]
AT1G20693.1	1.6e-37	63.06	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..192
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 49..192
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 86..152 e-value: 1.39708E-19 score: 76.8977
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 85..156 e-value: 3.4E-25 score: 99.7
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 86..155 e-value: 5.5E-23 score: 81.2
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 86..155 score: 20.373165
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 70..170 e-value: 7.7E-27 score: 95.5
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 72..159
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 49..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21367-RA	Carg21367-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin