Carg21358 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21358
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Localized to the inner membrane of the chloroplast
Location	Carg_Chr01: 13180457 .. 13183233 (-)
RNA-Seq Expression	Carg21358
Synteny	Carg21358

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTACCCATTAATTGTATTAGTCTAAGTTTACTCTCGCCAATTTTCCTGCCAGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTCTCCCCTACCCGCTCGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGGTATAATCTTTGAAATCACTACTAAAACGATATGCCATTTTGTCATCTCATATTATAGCATTACAGTCTAGGGAGTCTATTTTTTGAAGAAATTATTATCAATCACTACATTGAGAAACTATTTACGTGGTAGGAATGCATGTTTAGAATCTTTGTGTGGGTAGGCTTATCATTGGGGTGCACAATAACTGGAAAAGGAACTGCCGTGCTGAGCTGAATTGAATGTGTTAATCTCAGGTAGTCAACAACCATGAACATAACTAATTTTTAGCTGGTTCAAACAGATTTGCAACCAAAGGATGGGCCTGTTTAGTTTGCTATGCTCAAAACTGAGTCTCGTTGATTTGGTCAAAGACTGATCAAATCAACATAATGAAGGCGTATAGGTTTCCTACCCAAAAGAAGGGGAAAACATAATAATGAATTAGAGGCAGCCAACATTTTGTGGAATTGTAGTCCATTCTCTCCTTTGGTTAATTTGGAAGGAGAGAACAAATAGGATTTTTAAAGTCAAGGAGACTACGGTGGATTCTTTTTGTAATCGTGTACAACACTTAGCATTGTGGTGGTGTTCCAAACACACGAGCTTTTTTTTTTGGTTGTAATTTTAGTCTTTTGATGATTACTAATGATTGGAAGGCTCCAATGGTCTATTTTCGTGAGGGGGATTTTTCTTCCCGCACTCAGGTTGTTTCTCTCTCTCTATCTGTCTATAAAGCATCATTCATCGTCCCCAAGCCTAGATTGTTTCTCTATCTCTTTGTCTATAAAGCCTCATTTCTTATACCAAAAAATTACTAATTAATAAATAAACAATAACTCTTAGGGTTGAATAATGTCTAGTCTGTAACAATTGTTAATAACGTTTTTCCGAGTGGAAACTAATAATAGTATTCCTATATGTTTCAAATGGACATAGCACAAGTTGATGTCTATTTTATTGTATATGTCTTGATGGGTCTGTCCTATATGCTTCATTTGAAATACTCTGACGGCAGTTTATTATGCACCTTGTGGCAGTGATGGTGGACGGTCAAGCAGTGCAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGTACGCTTGGCTGTGTATATGCCCCTCAGGTTTTTAACTTTTTTCATCTCTTATCTGACCTCTAAATTGTACATATGGGAAATTTCACCTAGTATATCTGTTACTTGTGTGCTATGGTTACTATCTTAGGGAAGGTATGTAGAAATATGCACAACTATTGTCTCTGAGCTTCAAGTGCAGAATCCTAGTCTTTTTATGACTGAGAGTTGATCTTGTGTTTGAATTATAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCTTAGAGGTGCAAAACCACTCATCTCTTTTTATTTGTTGCGAGTGATCTTGTGAATGAACATTTCATCTTCACTTGACATTGATTTACCCAATCGTGGATTTTATTCGTAACATTGCACTTTCTTCTTAAACACCATGAGTTGGCAGAATGATAATTGGAGTTTGGGAAAGAAAAGGGTTAAGAGGGAATGAGTTCAAATCATGTGGGCACCTACGTATGATTTTAAAATTCTGTTAGTTTTCTTGGCAACCACTTGTACTAGGATCTAAGTAGTTGTCCCATGAGATAAGGTGGCTCGAACATTTGCAGGTATAAAATAATAATAATAGTAGTAATAAATATATATTCTTTCCAACCTTCATCAACTTCTCATCAAAGATGCTAAAATGTGTTTGTGTAACTTCAGTTTTGACAATTCTGCGAGGGGGTATTTGAATTTTGCATAAAATTTGTGTAGTATAAGGTCAAAGGAGTACATAAACTGGAATACGAGTTTATATGTATGGATTTACTTATCCTGGGATACGGAGTTTTCTAATTTATGGAGCACATAAACTCATATCACATGAATCTAAAACAGTTCTTCTATAGTACATACTAATTTTAACAAATTATAAACCCACCAAAAAAAAAAAAAAAAAAAAATAATACAGATTACTGATTCAATTGCACAATTCAAATAAGCTTATCGACTAAATATCCCACTTTCATTTGGTTTATGAGATATGGTTTGTCGGTATTTAGTATAAAATATGACTATAATATGTTGTATGTATGTAGTCTAGAAGATTAGCAAACTTGTGGATCAGGATAAGCAAATCTACACCCATCTAGATTATACAAAACTAATCTATGAACTAAACACAGGGCCCTTTCCAGTACGATTTGTCTAAAATTTTTAGATAACAATATTTTGTTTTTGATTCTGGATTTTTTTCTTTTTAACTCTGAACTTCCTTTATAGAAGAAATATAATATTACGTGCTTTTCTTAAACAGTTCCCGTTCGGTTTTTGATGTGCCAACATGTACTTGCTTTTTATTGAAATTGCAGAAAACGAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTCTCAGCTCCGCACAGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA

mRNA sequence

ATGTATGTACCCATTAATTGTATTAGTCTAAGTTTACTCTCGCCAATTTTCCTGCCAGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTCTCCCCTACCCGCTCGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGTGATGGTGGACGGTCAAGCAGTGCAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGTACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCTTAGAGAAAACGAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTCTCAGCTCCGCACAGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA

Coding sequence (CDS)

ATGTATGTACCCATTAATTGTATTAGTCTAAGTTTACTCTCGCCAATTTTCCTGCCAGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTCTCCCCTACCCGCTCGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGTGATGGTGGACGGTCAAGCAGTGCAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGTACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCTTAGAGAAAACGAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTCTCAGCTCCGCACAGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA

Protein sequence

MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

Homology

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BLAST of Carg21358 vs. NCBI nr
Match: KAG7037964.1 (hypothetical protein SDJN02_01597, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.1 bits (832), Expect = 3.6e-85
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQ 60
           MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQ
Sbjct: 1   MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQ 60

Query: 61  AAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDE 120
           AAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDE
Sbjct: 61  AAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDE 120

Query: 121 EKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           EKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Sbjct: 121 EKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 169

[Close]

BLAST of Carg21358 vs. NCBI nr
Match: KAG6608647.1 (hypothetical protein SDJN03_01989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288.5 bits (737), Expect = 3.7e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF
Sbjct: 21  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN
Sbjct: 81  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Sbjct: 141 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

[Close]

BLAST of Carg21358 vs. NCBI nr
Match: XP_022941515.1 (uncharacterized protein LOC111446794 [Cucurbita moschata])

HSP 1 Score: 286.2 bits (731), Expect = 1.9e-73
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF
Sbjct: 21  GSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN
Sbjct: 81  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Sbjct: 141 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

[Close]

BLAST of Carg21358 vs. NCBI nr
Match: XP_023521457.1 (uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF
Sbjct: 21  GSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGL+VGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN
Sbjct: 81  VLGGLVVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Sbjct: 141 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

[Close]

BLAST of Carg21358 vs. NCBI nr
Match: XP_022981122.1 (uncharacterized protein LOC111480366 [Cucurbita maxima])

HSP 1 Score: 285.0 bits (728), Expect = 4.1e-73
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF
Sbjct: 21  GSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKA+EKTRKVLAQKIEQLN
Sbjct: 81  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKAVEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Sbjct: 141 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

[Close]

BLAST of Carg21358 vs. ExPASy TrEMBL
Match: A0A6J1FTW3 (uncharacterized protein LOC111446794 OS=Cucurbita moschata OX=3662 GN=LOC111446794 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.0e-74
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF
Sbjct: 21  GSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN
Sbjct: 81  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Sbjct: 141 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

[Close]

BLAST of Carg21358 vs. ExPASy TrEMBL
Match: A0A6J1IT36 (uncharacterized protein LOC111480366 OS=Cucurbita maxima OX=3661 GN=LOC111480366 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.0e-73
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF
Sbjct: 21  GSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKA+EKTRKVLAQKIEQLN
Sbjct: 81  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKAVEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Sbjct: 141 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

[Close]

BLAST of Carg21358 vs. ExPASy TrEMBL
Match: A0A6J1FC82 (uncharacterized protein LOC111442778 OS=Cucurbita moschata OX=3662 GN=LOC111442778 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 139/150 (92.67%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADK  GSVSPT  LLNPGWVGKAKLST RRPLSVQAAYSDGGRSS+AGIF+GGF
Sbjct: 21  GSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSVQAAYSDGGRSSNAGIFVGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGLIVGTLGCVYAPQISKALAGTDRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLN
Sbjct: 81  VLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRT+D PNGVAVNSDE+EPAI
Sbjct: 141 SAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of Carg21358 vs. ExPASy TrEMBL
Match: A0A6J1IGB6 (uncharacterized protein LOC111474436 OS=Cucurbita maxima OX=3661 GN=LOC111474436 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.6e-68
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKTADK  GSVSPT  LLNPGWVGKAKLST RRPLSVQAAYSD GRSS+AGIF+GGF
Sbjct: 21  GSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSVQAAYSDSGRSSNAGIFVGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGGLIVGTLGCVYAPQISKALAGTDRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLN
Sbjct: 81  VLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVSSQLRT+D PNGVAVNSDE+EPAI
Sbjct: 141 SAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of Carg21358 vs. ExPASy TrEMBL
Match: A0A1S3BV81 (uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 20  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGF 79
           GSNLKT DKR GS+SPT  +L+PGWVGKAKLSTFRRPLSVQAAYSDGGRSS+AGIFIGGF
Sbjct: 21  GSNLKTVDKRLGSLSPTSLVLSPGWVGKAKLSTFRRPLSVQAAYSDGGRSSNAGIFIGGF 80

Query: 80  VLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 139
           VLGG+IVGTLGCVYAPQISKA+AG DRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN
Sbjct: 81  VLGGIIVGTLGCVYAPQISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLN 140

Query: 140 SAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170
           SAIDEVS+QLR ED PNGVAVNSDEVE AI
Sbjct: 141 SAIDEVSAQLRPEDPPNGVAVNSDEVESAI 170

[Close]

BLAST of Carg21358 vs. TAIR 10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast. )

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-43
Identity = 85/113 (75.22%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 54  RRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKL 113
           +R L++Q+AY D   S S G+F+GGF+LGGLIVG LGCVYAPQISKA+AG DRKDLMRKL
Sbjct: 53  KRILTIQSAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGADRKDLMRKL 112

Query: 114 PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVE 167
           PKFIYDEEKALEKTRKVLA+KI QLNSAID+VSSQL++ED+PNG A+++DE+E
Sbjct: 113 PKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQLKSEDTPNGAALSTDEIE 165

[Close]

BLAST of Carg21358 vs. TAIR 10
Match: AT5G16660.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-15
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 49  KLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKD 108
           K S   R  SV A Y DG RS S+G FI GF+LGG + G +  ++APQI +++   + + 
Sbjct: 45  KKSNRTRKFSVSAGYRDGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEY 104

Query: 109 LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTED---SPNGVAVNSD-E 167
              K  +  Y +E  LEKTR+ L +KI QLNSAID VSS+LR  +   S   V V +D E
Sbjct: 105 GFEKPKQPTYYDE-GLEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPE 164

[Close]

BLAST of Carg21358 vs. TAIR 10
Match: AT5G16660.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-13
Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = 0


Query: 49  KLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKD 108
           K S   R  SV A   DG RS S+G FI GF+LGG + G +  ++APQI +++   + + 
Sbjct: 45  KKSNRTRKFSVSA--GDGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEY 104

Query: 109 LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTED---SPNGVAVNSD-E 167
              K  +  Y +E  LEKTR+ L +KI QLNSAID VSS+LR  +   S   V V +D E
Sbjct: 105 GFEKPKQPTYYDE-GLEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPE 163

[Close]

BLAST of Carg21358 vs. TAIR 10
Match: AT3G02900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast hits to 80 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-12
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 14  SPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAG 73
           +PI   G +   A + F ++  + +L           S     LSV A Y  G +   + 
Sbjct: 7   APISFSGDSHVKAHRNFNAIRKSSTLT------VQTKSNRSHKLSVSAGYRGGSKGGGSS 66

Query: 74  IFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQ 133
            F+ GF+LG  + GTL  ++APQI +++   +     +      YDE   LE+ R++L +
Sbjct: 67  DFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDE--GLEERREILNE 126

Query: 134 KIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEV 166
           KI QLNSAID+VSS+L+   S +    +S  V
Sbjct: 127 KIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSV 150

[Close]

BLAST of Carg21358 vs. TAIR 10
Match: AT3G02900.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1). )

HSP 1 Score: 67.8 bits (164), Expect = 9.7e-12
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 57  LSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKF 116
           LSV A Y  G +   +  F+ GF+LG  + GTL  ++APQI +++   +     +     
Sbjct: 43  LSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFKKPEQPM 102

Query: 117 IYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEV 166
            YDE   LE+ R++L +KI QLNSAID+VSS+L+   S +    +S  V
Sbjct: 103 YYDE--GLEERREILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSV 149

The following BLAST results are available for this feature:

BLAST of Carg21358 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037964.1	3.6e-85	100.00	hypothetical protein SDJN02_01597, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6608647.1	3.7e-74	100.00	hypothetical protein SDJN03_01989, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022941515.1	1.9e-73	99.33	uncharacterized protein LOC111446794 [Cucurbita moschata]	[more]
XP_023521457.1	2.4e-73	98.67	uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo]	[more]
XP_022981122.1	4.1e-73	98.67	uncharacterized protein LOC111480366 [Cucurbita maxima]	[more]

BLAST of Carg21358 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21358 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTW3	9.0e-74	99.33	uncharacterized protein LOC111446794 OS=Cucurbita moschata OX=3662 GN=LOC1114467...	[more]
A0A6J1IT36	2.0e-73	98.67	uncharacterized protein LOC111480366 OS=Cucurbita maxima OX=3661 GN=LOC111480366...	[more]
A0A6J1FC82	1.1e-68	92.67	uncharacterized protein LOC111442778 OS=Cucurbita moschata OX=3662 GN=LOC1114427...	[more]
A0A6J1IGB6	5.6e-68	92.00	uncharacterized protein LOC111474436 OS=Cucurbita maxima OX=3661 GN=LOC111474436...	[more]
A0A1S3BV81	1.1e-66	90.00	uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=...	[more]

BLAST of Carg21358 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42960.1	3.6e-43	75.22	expressed protein localized to the inner membrane of the chloroplast.	[more]
AT5G16660.1	3.2e-15	45.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G16660.2	5.1e-13	44.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02900.1	2.5e-12	31.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02900.2	9.7e-12	37.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..169
None	No IPR available	PANTHER	PTHR34048:SF9	SUBFAMILY NOT NAMED	coord: 18..169
None	No IPR available	PANTHER	PTHR34048	LOW-DENSITY RECEPTOR-LIKE PROTEIN	coord: 18..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21358-RA	Carg21358-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0008250	oligosaccharyltransferase complex
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity