Carg21298 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21298
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor WER-like
Location	Carg_Chr15: 9179544 .. 9180385 (-)
RNA-Seq Expression	Carg21298
Synteny	Carg21298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAACATCATCATGTTGTTCCAAAGGAGGCTTACACAAAGGGCCATGGACTGCTAGAGAAGATGCATTGCTTGTCAGCTATATTCAACAACATGGTGAAGGCCATTGGAGAGCCTTGCCAAAGAAAGCTGGTGAGTTCTTCAATCTTTTCTTCTCCATTCATGGAGTTGTTTCTTAAAACGCTCTCTGTGAATGAATTTAGGTTTGCTTCGATGTGGAAAGAGTTGCAGATTGAGATGGATGAACTATCTTCGACCCGACATTAAACGTGGCAACATAACCCCTGACGAGGACGACTTGATTATAAAACTACACACTTTACTTGGCAACAGGTGGTCTCTCATTGCCGGTAGGCTTCCGGGCCGAACCGATAATGAGATAAAAAACTACTGGAATTCCCATCTAAGCAAAAAGTTGGCAATAACCAAAGACAATGCAGGAGAGGCAAAGAAGGAGAAGGTCATCACTACAAACTCTGCAAATGGAGAGACATCAGACGGTAGAAAACCGGCCCGAGTTTCGAACGGCGATAACTCGAGCAGTGGCATGGCAAGCGGGCTACCTTTTTTGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGGAGGGAAGAAATGGAAGAAAGTGGGGATCTTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGGATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

mRNA sequence

ATGGGAAGAACATCATCATGTTGTTCCAAAGGAGGCTTACACAAAGGGCCATGGACTGCTAGAGAAGATGCATTGCTTGTCAGCTATATTCAACAACATGGTGAAGGCCATTGGAGAGCCTTGCCAAAGAAAGCTGGAGAGGCAAAGAAGGAGAAGGTCATCACTACAAACTCTGCAAATGGAGAGACATCAGACGGTAGAAAACCGGCCCGAGTTTCGAACGGCGATAACTCGAGCAGTGGCATGGCAAGCGGGCTACCTTTTTTGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGGAGGGAAGAAATGGAAGAAAGTGGGGATCTTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGGATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

Coding sequence (CDS)

ATGGGAAGAACATCATCATGTTGTTCCAAAGGAGGCTTACACAAAGGGCCATGGACTGCTAGAGAAGATGCATTGCTTGTCAGCTATATTCAACAACATGGTGAAGGCCATTGGAGAGCCTTGCCAAAGAAAGCTGGAGAGGCAAAGAAGGAGAAGGTCATCACTACAAACTCTGCAAATGGAGAGACATCAGACGGTAGAAAACCGGCCCGAGTTTCGAACGGCGATAACTCGAGCAGTGGCATGGCAAGCGGGCTACCTTTTTTGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGGAGGGAAGAAATGGAAGAAAGTGGGGATCTTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGGATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

Protein sequence

MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI

Homology

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: KAG7017035.1 (Transcription factor MYB4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352.8 bits (904), Expect = 1.7e-93
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGEAKKEKVITTNSAN 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGEAKKEKVITTNSAN
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGEAKKEKVITTNSAN 60

Query: 61  GETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEME 120
           GETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEME
Sbjct: 61  GETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEME 120

Query: 121 ESGDLFGGCEVFYEGSWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 178
           ESGDLFGGCEVFYEGSWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI
Sbjct: 121 ESGDLFGGCEVFYEGSWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI 177

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: KAG6579576.1 (Transcription repressor MYB5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318.2 bits (814), Expect = 4.6e-83
Identity = 177/256 (69.14%), Postives = 177/256 (69.14%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK---------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK                
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKRGNITPDEDDLIIKLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLAIT 120

Query: 121 ---AGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDR 178
              AGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDR
Sbjct: 121 KDNAGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDR 180

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_022928836.1 (transcription factor WER-like [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 5.1e-82
Identity = 175/256 (68.36%), Postives = 176/256 (68.75%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK---------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK                
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKRGNITPDEDDLIIKLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLAIT 120

Query: 121 ---AGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDR 178
              AGEAKKEKVITTNSANGETSD RKPARVSNGDNSS+GMASGLPFLSGNQGGGGETDR
Sbjct: 121 KDNAGEAKKEKVITTNSANGETSDSRKPARVSNGDNSSTGMASGLPFLSGNQGGGGETDR 180

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_022969770.1 (transcription factor MYB8-like [Cucurbita maxima])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 172/255 (67.45%), Postives = 173/255 (67.84%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  -------------------------------------------EAK-------------- 120
                                                      E K              
Sbjct: 61  YLRPDIKRGNITPDEDDLIIKLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLAIT 120

Query: 121 -------KEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRL 178
                  KEK+ITTNS NGETSD RKPARVSNGDNS SGMASGLPFLSGNQGGGGETDRL
Sbjct: 121 KDNAGEAKEKIITTNSPNGETSDSRKPARVSNGDNSGSGMASGLPFLSGNQGGGGETDRL 180

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_038874421.1 (transcription factor MYB8-like [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-55
Identity = 141/265 (53.21%), Postives = 154/265 (58.11%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK---------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLV+YIQQ+GEGHWRALPKK                
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKRGNITTDEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRVAIT 120

Query: 121 ---AGEAKKEKVITTNSANGETSDGRKPARV---SNGDNSSSGMASGLPFLSGNQ----- 178
              AGE KKE +I     NGETS+ RKP  +    N DNSS+GMAS LP  SGNQ     
Sbjct: 121 KDNAGETKKENIII---ENGETSNTRKPIGILPFCNEDNSSNGMASRLPLSSGNQGGDNG 180

[Close]

BLAST of Carg21298 vs. ExPASy Swiss-Prot
Match: Q7XBH4 (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR + CC K GL KGPWT  ED +LV++IQ+HG G+WRALPK+AG
Sbjct: 1  MGR-APCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAG 45

[Close]

BLAST of Carg21298 vs. ExPASy Swiss-Prot
Match: Q9LDR8 (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 5  SSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          S CC K GL KGPWT+ ED  LV YIQ+HG G+WR LPK AG
Sbjct: 4  SPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAG 45

[Close]

BLAST of Carg21298 vs. ExPASy Swiss-Prot
Match: Q9LE63 (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR S CC K GL KGPWT  ED  L++YI++HG G WR+LP+KAG
Sbjct: 1  MGR-SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG 45

[Close]

BLAST of Carg21298 vs. ExPASy Swiss-Prot
Match: Q38850 (Transcription repressor MYB5 OS=Arabidopsis thaliana OX=3702 GN=MYB5 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 3  RTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          +T+ CC+K G+ +GPWT  ED +LVS+I++ GEG WR+LPK+AG
Sbjct: 13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG 56

[Close]

BLAST of Carg21298 vs. ExPASy Swiss-Prot
Match: P27898 (Myb-related protein P OS=Zea mays OX=4577 GN=P PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGRT  CC K GL +G WTA ED LL +YI +HGEG WR+LPK AG
Sbjct: 1  MGRT-PCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAG 45

[Close]

BLAST of Carg21298 vs. ExPASy TrEMBL
Match: A0A6J1ELE7 (transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111435631 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 175/256 (68.36%), Postives = 176/256 (68.75%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK---------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK                
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKRGNITPDEDDLIIKLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLAIT 120

Query: 121 ---AGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDR 178
              AGEAKKEKVITTNSANGETSD RKPARVSNGDNSS+GMASGLPFLSGNQGGGGETDR
Sbjct: 121 KDNAGEAKKEKVITTNSANGETSDSRKPARVSNGDNSSTGMASGLPFLSGNQGGGGETDR 180

[Close]

BLAST of Carg21298 vs. ExPASy TrEMBL
Match: A0A6J1I0W3 (transcription factor MYB8-like OS=Cucurbita maxima OX=3661 GN=LOC111468870 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.8e-80
Identity = 172/255 (67.45%), Postives = 173/255 (67.84%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  -------------------------------------------EAK-------------- 120
                                                      E K              
Sbjct: 61  YLRPDIKRGNITPDEDDLIIKLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLAIT 120

Query: 121 -------KEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRL 178
                  KEK+ITTNS NGETSD RKPARVSNGDNS SGMASGLPFLSGNQGGGGETDRL
Sbjct: 121 KDNAGEAKEKIITTNSPNGETSDSRKPARVSNGDNSGSGMASGLPFLSGNQGGGGETDRL 180

[Close]

BLAST of Carg21298 vs. ExPASy TrEMBL
Match: A0A5A7TGY6 (Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001650 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.0e-52
Identity = 139/263 (52.85%), Postives = 154/263 (58.56%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLV+YIQQ+GEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ---------------------------------------------------EAKKEKVIT 120
                                                                 K   IT
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAIT 120

Query: 121 TNSA-------NGETSDGRKPARVS---NGDNSSSGMASGLPFLSGNQ--------GGGG 178
            ++A       NGETS+ RKP  VS   N DNSS+G+ S L   SGNQ        GGGG
Sbjct: 121 KDNAGETKKESNGETSNTRKPTEVSSFCNDDNSSNGIGSELLLSSGNQGGEDGGSRGGGG 180

[Close]

BLAST of Carg21298 vs. ExPASy TrEMBL
Match: A0A1S3AU00 (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103482846 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.8e-51
Identity = 137/263 (52.09%), Postives = 153/263 (58.17%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLV+YIQQ+GEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ---------------------------------------------------EAKKEKVIT 120
                                                                 K   IT
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAIT 120

Query: 121 TNSA-------NGETSDGRKPARVS---NGDNSSSGMASGLPFLSGNQ--------GGGG 178
            ++A       NGETS+ RKP  VS   N DNSS+G+ S L   SGNQ        GGGG
Sbjct: 121 KDNAGETKKESNGETSNTRKPTEVSSFCNDDNSSNGIGSELLLSSGNQGGEDGGSRGGGG 180

[Close]

BLAST of Carg21298 vs. ExPASy TrEMBL
Match: A0A6J1E0Q2 (transcription factor MYB8-like OS=Momordica charantia OX=3673 GN=LOC111024867 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 8.6e-51
Identity = 132/263 (50.19%), Postives = 146/263 (55.51%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCS GGLHKGPWTAREDALLV+YIQQHGEGHWR+LPKKAG              
Sbjct: 1   MGRTSSCCSNGGLHKGPWTAREDALLVNYIQQHGEGHWRSLPKKAGLLRCGKSCRLRWMN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAVT 120

Query: 121 -------EAKKEKV-ITTNSANGETSDGRKPARVS---NGDNSSSGMASGLPFLSGNQGG 178
                  +A+KE++ I +NS NGE+S   KP RVS   + DNSSSG+AS LP  SGN GG
Sbjct: 121 ATENTRNQARKERITIPSNSENGESSKTTKPTRVSSFCDEDNSSSGVASALPLSSGNPGG 180

[Close]

BLAST of Carg21298 vs. TAIR 10
Match: AT4G21440.1 (MYB-like 102 )

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-12
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 5  SSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          S CC K GL KGPWT+ ED  LV YIQ+HG G+WR LPK AG
Sbjct: 4  SPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAG 45

[Close]

BLAST of Carg21298 vs. TAIR 10
Match: AT3G13540.1 (myb domain protein 5 )

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 3  RTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          +T+ CC+K G+ +GPWT  ED +LVS+I++ GEG WR+LPK+AG
Sbjct: 13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG 56

[Close]

BLAST of Carg21298 vs. TAIR 10
Match: AT3G28910.1 (myb domain protein 30 )

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 7  CCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          CC KGG+ KGPWT  ED +LV+YIQ+HG G+WRA+P   G
Sbjct: 6  CCDKGGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTNTG 45

[Close]

BLAST of Carg21298 vs. TAIR 10
Match: AT3G01140.1 (myb domain protein 106 )

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 5  SSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          S CC K GL KGPWT  ED  L++YI++HG G WR+LP+KAG
Sbjct: 47 SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG 88

[Close]

BLAST of Carg21298 vs. TAIR 10
Match: AT4G28110.1 (myb domain protein 41 )

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR S CC K G+ KGPWTA ED  L+ YI+ HG G+WR LPK AG
Sbjct: 1  MGR-SPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAG 45

The following BLAST results are available for this feature:

BLAST of Carg21298 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017035.1	1.7e-93	100.00	Transcription factor MYB4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6579576.1	4.6e-83	69.14	Transcription repressor MYB5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022928836.1	5.1e-82	68.36	transcription factor WER-like [Cucurbita moschata]	[more]
XP_022969770.1	1.8e-79	67.45	transcription factor MYB8-like [Cucurbita maxima]	[more]
XP_038874421.1	1.8e-55	53.21	transcription factor MYB8-like [Benincasa hispida]	[more]

BLAST of Carg21298 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XBH4	6.4e-11	65.22	Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 ...	[more]
Q9LDR8	1.1e-10	66.67	Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1	[more]
Q9LE63	1.1e-10	63.04	Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1	[more]
Q38850	2.4e-10	56.82	Transcription repressor MYB5 OS=Arabidopsis thaliana OX=3702 GN=MYB5 PE=1 SV=1	[more]
P27898	2.4e-10	65.22	Myb-related protein P OS=Zea mays OX=4577 GN=P PE=2 SV=1	[more]

BLAST of Carg21298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELE7	2.5e-82	68.36	transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111435631 PE=4...	[more]
A0A6J1I0W3	8.8e-80	67.45	transcription factor MYB8-like OS=Cucurbita maxima OX=3661 GN=LOC111468870 PE=4 ...	[more]
A0A5A7TGY6	2.0e-52	52.85	Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3AU00	3.8e-51	52.09	transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103482846 PE=4 SV=1	[more]
A0A6J1E0Q2	8.6e-51	50.19	transcription factor MYB8-like OS=Momordica charantia OX=3673 GN=LOC111024867 PE...	[more]

BLAST of Carg21298 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21440.1	7.7e-12	66.67	MYB-like 102	[more]
AT3G13540.1	1.7e-11	56.82	myb domain protein 5	[more]
AT3G28910.1	2.3e-11	62.50	myb domain protein 30	[more]
AT3G01140.1	2.3e-11	61.90	myb domain protein 106	[more]
AT4G28110.1	2.3e-11	63.04	myb domain protein 41	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 15..46 e-value: 9.3E-6 score: 25.8
None	No IPR available	GENE3D	1.10.10.60		coord: 15..71 e-value: 2.9E-8 score: 35.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	PANTHER	PTHR47998:SF32	MYB-RELATED PROTEIN 308-LIKE	coord: 1..46
None	No IPR available	PANTHER	PTHR47998	TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1	coord: 1..46
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 10..52 score: 6.748212
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 17..41 e-value: 1.09716E-4 score: 36.3994
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21298-RA	Carg21298-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding