Carg21293 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21293
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 9164865 .. 9166084 (+)
RNA-Seq ExpressionCarg21293
SyntenyCarg21293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATCTTTTCAAAATCGCTCTGTAGAAAGAAGAAATTTGGGGAAAAACCTGAGGAGAGCTCGATTAAGGTGGTAGTCTTGTTGATATGTTTGGGGAGAAGGCCATTTTCTAGGGGATTTCCAGAGCCGATTGCCAATAAAATGTATTGGTCAGCCACGGATGTCGCGAACTGGAGCTGGAAAGCGATGTAGATCAAATCTCCACGAACAACAACTACAGGGCTCACACTGGTGAATCGCAAATCGCCTTTGTCAGGTATGACTTTACTCGTGTTCTTGCCTCCCAAATAGTATTGCCTTATTCCTGATACGCCGTTCCTCTCAACCCACGCCACCACCGCGCTCGATCCCTCCATAAGTCCATCTCTGGAGAATCCGATTCCAATCCATTTATGAACGTGTTTCCCTGATAAAACGAACGTCATCACGTTCTTACCGTCTTCGAAAAACTGCATCGAATCACGAAGAACTATTGGGTCGGAATTGGAGGAGATTTTAGCTATCAAATTTGGATTTCTTCCTCTGGTTTCTGCTTATTATTATTTTTCTTTTCAATTTGGTTTCTGATATTGAAAATTAAACCTCGATTTATCTAAGAAGATTGAAAAGCATCGTAAAGAAATTACAAGAAAACGGGTCTAAATTTCTATTACCTTTCTTAAATTTTGAATTGGGCATGAATTAGGATGAAATTAAATGATGGATTGAGAGAGTTACACTGAAGGAAAACTTGCGTTCCCAAATGGGGGAGCAGGCGAGGCTGGAGAGTTGAGAATAAGGAGAAGGAAGAACATTTTTGAGATTTGAATTGCAGGTGCCGGAAGTATCGCCGTCGGATTGGGCGGAGGCTTTGAGCTGGAATCCGATGATGATGGATATGAAGCAGAAGAGTGAAAGGAGAAGTTTGTTTGAAGAAGAATTTGAAACTGCCATTTTCTTAGCTTTCCATTTCCTTTTTCTTTTTTGTTCTCTAATTCTCTCTGTTTACGCAGAAAGCTTGCTGGTAATGGCAGAGGTAGCCATTAATGGAAGCACAGCTTTGTGATCAAACAAGTGGAAGGTGGAGAAGGAAGAAGGTCAATGGATCACGCTTGACCATCGTTCTCATCAACCCAAGGATCTTAGCCCCGTCATTTTGGTTTGTGGATTAACCCTTAAACTTTATTTTATATTTATGTTTTTTTTTACCTTTTTCCTTCTTGTTTAACACACTTTTA

mRNA sequence

ATGTCAATCTTTTCAAAATCGCTCTGTAGAAAGAAGAAATTTGGGGAAAAACCTGAGGAGAGCTCGATTAAGGTGGTAGTCTTGTTGATATGTTTGGGGAGAAGGCCATTTTCTAGGGGATTTCCAGAGCCGATTGCCAATAAAATCCACGGATGTCGCGAACTGGAGCTGGAAAGCGATGTAGATCAAATCTCCACGAACAACAACTACAGGGCTCACACTGGTGAATCGCAAATCGCCTTTGTCAGAAAGCTTGCTGGTAATGGCAGAGGTAGCCATTAATGGAAGCACAGCTTTGTGATCAAACAAGTGGAAGGTGGAGAAGGAAGAAGGTCAATGGATCACGCTTGACCATCGTTCTCATCAACCCAAGGATCTTAGCCCCGTCATTTTGGTTTGTGGATTAACCCTTAAACTTTATTTTATATTTATGTTTTTTTTTACCTTTTTCCTTCTTGTTTAACACACTTTTA

Coding sequence (CDS)

ATGTCAATCTTTTCAAAATCGCTCTGTAGAAAGAAGAAATTTGGGGAAAAACCTGAGGAGAGCTCGATTAAGGTGGTAGTCTTGTTGATATGTTTGGGGAGAAGGCCATTTTCTAGGGGATTTCCAGAGCCGATTGCCAATAAAATCCACGGATGTCGCGAACTGGAGCTGGAAAGCGATGTAGATCAAATCTCCACGAACAACAACTACAGGGCTCACACTGGTGAATCGCAAATCGCCTTTGTCAGAAAGCTTGCTGGTAATGGCAGAGGTAGCCATTAA

Protein sequence

MSIFSKSLCRKKKFGEKPEESSIKVVVLLICLGRRPFSRGFPEPIANKIHGCRELELESDVDQISTNNNYRAHTGESQIAFVRKLAGNGRGSH
Homology
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BLAST of Carg21293 vs. NCBI nr
Match: KAG7017030.1 (hypothetical protein SDJN02_22142, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.0 bits (484), Expect = 4.5e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MSIFSKSLCRKKKFGEKPEESSIKVVVLLICLGRRPFSRGFPEPIANKIHGCRELELESD 60
          MSIFSKSLCRKKKFGEKPEESSIKVVVLLICLGRRPFSRGFPEPIANKIHGCRELELESD
Sbjct: 1  MSIFSKSLCRKKKFGEKPEESSIKVVVLLICLGRRPFSRGFPEPIANKIHGCRELELESD 60

Query: 61 VDQISTNNNYRAHTGESQIAFVRKLAGNGRGSH 94
          VDQISTNNNYRAHTGESQIAFVRKLAGNGRGSH
Sbjct: 61 VDQISTNNNYRAHTGESQIAFVRKLAGNGRGSH 93

The following BLAST results are available for this feature:
BLAST of Carg21293 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017030.14.5e-45100.00hypothetical protein SDJN02_22142, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21293 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21293 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21293 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21293-RACarg21293-RAmRNA