Carg21232 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21232
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionELMO domain-containing protein
LocationCarg_Chr18: 7745036 .. 7749814 (-)
RNA-Seq ExpressionCarg21232
SyntenyCarg21232
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCCTGATCAAGAGCGTCAGGCGTGGTATCAGATCAATGGAAAGAAATTGGATGGCAGTGAAGAAACCCATCGACTGATTTTAGGTTGTTAATTTGCTACATGAGTTGAGGGCTCCTTTCATTGCTCTGAAAAGCTTTTACCTAATCCGAAGGATCTGGATTTATCTCTTTGGAGAATTTGCTGTTCTTAAGATCCTAAACTTCATTTGATACCTCACATAAATTTTCAGATTCTTTTCACCTGAATGGGCCAACAAATTTATGAAATTAAGTTCAAAACTCCCAATAGATGACCGAGTATAGCATGCTATTACGCCTTTACTAATCCTTGTTGCCTTTTTTATGGTTTCAGACATCTTTCCAACGTCTGTTAAGAAAACAAGGAAGAAAACCAGCTGCTTAGGAATACCACTTTGCTTTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTCGATCTAGATGGTTGTGAGTTGAAAATCCATTTCTGCGTAGTGACAGTTCACCAATGGAGCTTCATTGCTTAATATTTTCTAAGTAGAGCACTGCCGTTTTGATATTTTATAGAAACTTGTATATTTTTTGAAAGAGAACTAAGGCAGCTCACCTTTTCAAATGCAGCAAACCAAGGACTTCTATCAGATCAGTGTTCCTTCAGATGTTGTCAGGTACATATCTAAACTTAATCCAGGAACATATCAAATATGAAGTTGTGCATGAATGCAAGAAACACAATTTTCTGATAACAGAGAATAATTTCATGTTGGAATGCCTAAGCTACGTGATGTTCTTTGTATCATTACAAATTTATCAGTACAGGTAGGTGATTTAATGTCGTGGCATTGATCATGTAGATAATATTATGGATTTAAGTACTGGGAAATAGGATCTGAAGAAATTAGTTTTATAATTGCTTCTACATTTCACTTCCCCTCACGATCACAAGTTCATTCTTCAGCACGAGAATGGACCAATATTTTCCTATTGTTGAGAAGTTTGATTCAAATCTGAAGATTTCTTGGTTGATTTTATATGGTTAACAATTATTATTTTGCCAACATAAATATCTCATTGGTTAAATTAGTATTCCTACCTATTTTATTTAAGATGTGAGATGGTATATTACAAAATGGCAATTATTGTCATTTTAATTTGGTGTAAATCCTATTTTGGTTTCTCTCACTTTCAAGTTTATTCTATTTTGGTTCTCAAATTTTCAAAATATTCATTTGGTCGTTAGAACTTTTAGATTTATTCTATGTTGGTCCCAGAGCTTTTAAAATGTTTAATTTAGCTCTTTGAGATTTCAAAAAAGATAGGTTTGAGTATGTATACATGCTAATATAAACATAATTTCAAGTCATATGAGTCAGGAACAAGTATTTGACAAGTCGATATTAGATGGAAAGATAATACGATTATGACCAAAATAAACCTTTTGAAAGTTTGACCAAAATGGAATGAACTTGAAAGTTTACTGACTAAAATAGTATTTAACCCTTCTAAAATTTTCCAAATTTTGAATCTTATTAAAAAAGTTAAAAAATTATTTTGATTAAAGTACTTTTGAACTTATTTTATTTTAGTCATTAAACTTAGTTTGAATTTGATTTTTGCCCAACTTGACAGCAGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGTAATAATATATATCCATTTAAGAAAAGATACGATATGAATATCATTTGAACATTTGTAGAGGAAAGATTAATATATATATATATAGTTAACCATAGACCAATTTAAAGATTTAGTCAAAGTATATGAACTAAAATATCACCAAAAAAAAAAAAAAAAAAAAAAACAATAGGTCTGAGCATCTACTTTTAAACGCTTTTTTTTCTCCTAAAGGCTAAAGATATTTATTAAATAAAAATTTGAAGGGCATGCGGTTTCAAGTGCTTTTGTTACTGTGTACAAAGTAAAGCTTCTTTTGTCTCTTTTCCCTCTCTACTTTTTTTTCTTCTTGAATAATCCTGATGGTAGTCAATTCGCTGGAGGCTGTACTTGATAGGATGCACTACTTTCTGTTTATATTTTTTCTGGTGGGAGTTCGTCTGCAACTTACTTCCTGTCCTGCTAGTGATTTAAACTGTGATGATTGGTTCTAGTTTTGTTGTGTCCCCGCTCCTTTATGTGCCTATTATGAACAAGATTTTGCCTTAGATCCTTGCAAAAATTACTCTGTTCCTAGCAATGTGGGGTTATTGCTGCATATCCTGCAAGGAAAGATTTGATTTCAATATCTGCCGGATTCTTTTTGTGCGAATATGATTTGAAAACATATTGTTTGTCATAGATTCCTTCATTTGAAGCCTTGGTGTATAATTAACTGAACGTTATTCTTATTCCTAAGATTGCTTCTGATTACTTTACATATACGATTTGAGAGAAAAAAAACATTTCCATATGCTTCAAAATGCATACCTTTTGGGCGTATCTAGATGCATGATTAGAGATTTAATAAAGAAAAAGTGGTAAAGAGAAACTTATTGGCTATTAAGCAGTGGCCATTAAGCTTGCACTACATGAAATAAGTTCTGGATTAAGCAACCTTTTTAATTTATGAAATACTTTGTTTCTTTATTCTGGGTGGCCCCGTACATATGGCTGCCACTTTTTGATGTTCTTATCCTAAGAAAGCAACATTTTTCCACAACAGTTCTTAATTTGACTGTATTTTACATTATACGAAGGTAGAGGAACTTTATCACTCGCCCAACCATGCACGTTCTTATCATAGCTAGCCTTTAGCCTTTCCCTATACAGTAGGATTAGGTTGTCTGGGTGAGTTTAAGTTTAGTTAAAGGCTTGTGTGTTGGTTGGGGATGTTGAGGATTATTGAGAAGAGTAGTCTCTCATTGGCTAATTAAGAGGAAGATCATGAAAACACTATCTCCATTGGTACGAGGCCTTTTGAGAAAACTAAATGCAAATCCTTGAAAGTTTATGCTTAAAGTAGACAATATTATACCATCCTAGAGGTTTGTGGTTTCTAACCTGATATTAGAGTCATGTCCTTTAACTTAGTTATCTCAATAGAATCCTCAAGTGTCGAACAAAGAAATTGTGAATCTCGTAAGTGTAGTCAAATGTGACTCAAGTGTCGAACAAATGGTGTATTTTGTTCGAGAGCTCCAGAGAAGGAGTAGAGTCTCACTTAAGGGGAGACTGTTTGAGAGCTCTAGAGAAAGAGACCTCAGGAGTGACTCTATGGTGTACTTTGTTCGAGGAGAGGATTGTTGAGGATTATTGAGAGAAGTAGTCTCACATTGGCTAATTGAAGATCACGAGGACACTATTTTCATTGGTATGAGGTCTTTAAGAGAAACCAAAAGCAAATCCCAAAGAACATATGCTCAAAGTGGACAATATCATATCATCACGAAGGTTCGTGGTTTTTAATAGAAGACACCTTGATATTAGTAGTGTCATGGACACCTTGGTATTAGTGGTGCGGATGAAGAAGATCTTGAGCACACCTTGCTACTAGTGGAAAGAAGCCTCATGGGAAGAAAGCAACAGATAACAGTCACGGGGGGTGGTCCAGCGACTGGGTTAGTGGATATAAAAAAGATTAGAATAGGGATATTATTCAAATGTAAAAGCTAGCCAGCATTCCGAATTCTGTTGCAGGGGGAAAATTCTTGATTCCTGTTAGTCGAGTTCTAATTGGTGGTCTTTGTCCCAAAATTATAATCACCAGCCTGGGAAAACCACAGGTCATTTAGCACGCCAGCGAATATGCGAGTAAGTGGGAGATTTTATATTCCCTGCTTTGAGCAAAGTAGAATCGTCATCCTCCCAAATTGAGAGATCCATTTTATATTATACAACCCAAGTAGAGGAAGCCACGCGTCTTGTTTGGCACATCCCAAGCTTGTACATATATTGGTATTGGAGCTCTTTTGTTGTAATAATATGATATGCAGTGTGGATCATAGGCCCCAATAATGGGGGGATGCTTTGTGGATGGACTGCTGGCGATTATAATATAGTGGGTGCTCCTGTCGGCTAGACTCTTCTTTTGTGCTGATTTATGTATATTACTTATATGAGTGAGTGGGGTAAAAAGGGGCACTGCCACACAACATTTGTACGAGATGATGTAGTAACTGTGGGGCAGGGTGGCATCAAGCGGTGACATAATCATATGGATTTGACGGTTATTAGTGAATTGGCCCTTGTAAAATATATTGAACCTCAGCCCTTCACTGCTAACTTATCTTATGCTCTTCTCATTAGTATTGAATCCTGCACTAATGGATGTCATTGTGATTCCACTAAATGAGTTGCTGTTATATATGTCCCGTTTTACCTTTTTTTTTTCGTACCTCTAACTCTTTAGTTGAGAGTTTATAACGTATCGGATCTGCGTCCGATTTATGAACGTAAGTATCCTAATTGTTCGTTGCCTATTTTAGGTAATAGTGGACTTTCTATTAGTTATTGGTCTAATTTTCTCATTTTCATAACAATATCTTCCTATTAATATCAATTTCTCTTATTTTCAATAGATGAAAGATCATTGGAGCAATCGCCTGACCTTTTGTATCAGGTAGCCATACACCAATTCATGTGCACAAAGGTACGAATCCTAGACGTTTGTTAATATATATAGAGATTTAGAGAAGTCTCCATAACTTGCCCAACCAATTCATGTGCAAAAAGTTCTCCACTATTGATTATTATTATTATTTGCTCTACAAATTTATTATAATAGTACATATT

mRNA sequence

TATCCTGATCAAGAGCGTCAGGCGTGGTATCAGATCAATGGAAAGAAATTGGATGGCAGTGAAGAAACCCATCGACTGATTTTAGACATCTTTCCAACGTCTGTTAAGAAAACAAGGAAGAAAACCAGCTGCTTAGGAATACCACTTTGCTTTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTCGATCTAGATGGTTCAAACCAAGGACTTCTATCAGATCAGTGTTCCTTCAGATGTTGTCAGATGAAAGATCATTGGAGCAATCGCCTGACCTTTTGTATCAGGTAGCCATACACCAATTCATGTGCACAAAGGTACGAATCCTAGACGTTTGTTAATATATATAGAGATTTAGAGAAGTCTCCATAACTTGCCCAACCAATTCATGTGCAAAAAGTTCTCCACTATTGATTATTATTATTATTTGCTCTACAAATTTATTATAATAGTACATATT

Coding sequence (CDS)

TATCCTGATCAAGAGCGTCAGGCGTGGTATCAGATCAATGGAAAGAAATTGGATGGCAGTGAAGAAACCCATCGACTGATTTTAGACATCTTTCCAACGTCTGTTAAGAAAACAAGGAAGAAAACCAGCTGCTTAGGAATACCACTTTGCTTTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTCGATCTAGATGGTTCAAACCAAGGACTTCTATCAGATCAGTGTTCCTTCAGATGTTGTCAGATGAAAGATCATTGGAGCAATCGCCTGACCTTTTGTATCAGGTAGCCATACACCAATTCATGTGCACAAAGGTACGAATCCTAGACGTTTGTTAA

Protein sequence

YPDQERQAWYQINGKKLDGSEETHRLILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSDERSLEQSPDLLYQVAIHQFMCTKVRILDVC
Homology
[Close]
BLAST of Carg21232 vs. NCBI nr
Match: KAG6573643.1 (hypothetical protein SDJN03_27530, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.7 bits (631), Expect = 5.0e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   YPDQERQAWYQINGKKLDGSEETHRLILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYD 60
           YPDQERQAWYQINGKKLDGSEETHRLILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYD
Sbjct: 36  YPDQERQAWYQINGKKLDGSEETHRLILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYD 95

Query: 61  HANARSRWFKPRTSIRSVFLQMLSDERSLEQSPDLLYQVAIHQFMCTKVRILDVC 116
           HANARSRWFKPRTSIRSVFLQMLSDERSLEQSPDLLYQVAIHQFMCTKVRILDVC
Sbjct: 96  HANARSRWFKPRTSIRSVFLQMLSDERSLEQSPDLLYQVAIHQFMCTKVRILDVC 150

[Close]
BLAST of Carg21232 vs. NCBI nr
Match: KAG7012734.1 (hypothetical protein SDJN02_25487, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 5.0e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   YPDQERQAWYQINGKKLDGSEETHRLILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYD 60
           YPDQERQAWYQINGKKLDGSEETHRLILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYD
Sbjct: 1   YPDQERQAWYQINGKKLDGSEETHRLILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYD 60

Query: 61  HANARSRWFKPRTSIRSVFLQMLSDERSLEQSPDLLYQVAIHQFMCTKVRILDVC 116
           HANARSRWFKPRTSIRSVFLQMLSDERSLEQSPDLLYQVAIHQFMCTKVRILDVC
Sbjct: 61  HANARSRWFKPRTSIRSVFLQMLSDERSLEQSPDLLYQVAIHQFMCTKVRILDVC 115

[Close]
BLAST of Carg21232 vs. NCBI nr
Match: XP_022945164.1 (uncharacterized protein LOC111449485 [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 6.3e-33
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 27  ILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSDE 86
           + DIFPTSVK+TRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSDE
Sbjct: 20  VSDIFPTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSDE 79

Query: 87  RSLEQSPDLLYQVA 101
           R LEQS DLLYQVA
Sbjct: 80  RLLEQSSDLLYQVA 93

[Close]
BLAST of Carg21232 vs. ExPASy TrEMBL
Match: A0A6J1G077 (uncharacterized protein LOC111449485 OS=Cucurbita moschata OX=3662 GN=LOC111449485 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.1e-33
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 27  ILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSDE 86
           + DIFPTSVK+TRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSDE
Sbjct: 20  VSDIFPTSVKETRKKTSCLGIPLCFCWCKYHIYDHANARSRWFKPRTSIRSVFLQMLSDE 79

Query: 87  RSLEQSPDLLYQVA 101
           R LEQS DLLYQVA
Sbjct: 80  RLLEQSSDLLYQVA 93

[Close]
BLAST of Carg21232 vs. ExPASy TrEMBL
Match: A0A287WWX4 (ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05
Identity = 30/84 (35.71%), Postives = 43/84 (51.19%), Query Frame = 0 

Query: 1   YPDQERQA-----WYQINGKKLDGSEETHRL-------------ILDIFPTSVKKTRKKT 60
           YPDQE Q      W  +  +  D S +  R              IL +   +  +T +++
Sbjct: 188 YPDQELQGLVSEQWKDMGWQGRDPSTDFRRRIHISRESSILCKDILCVISEATTETMRQS 247

Query: 61  SCLGIPLCFCWCKYHIYDHANARS 67
           S LG+P+C CWCKYHI+DHA+A S
Sbjct: 248 SHLGVPVCSCWCKYHIHDHADAGS 271

[Close]
BLAST of Carg21232 vs. ExPASy TrEMBL
Match: A0A287WWX6 (ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 27  ILDIFPTSVKKTRKKTSCLGIPLCFCWCKYHIYDHANARS 67
           IL +   +  +T +++S LG+P+C CWCKYHI+DHA+A S
Sbjct: 215 ILCVISEATTETMRQSSHLGVPVCSCWCKYHIHDHADAGS 254

The following BLAST results are available for this feature:
BLAST of Carg21232 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573643.15.0e-62100.00hypothetical protein SDJN03_27530, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012734.15.0e-62100.00hypothetical protein SDJN02_25487, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022945164.16.3e-3393.24uncharacterized protein LOC111449485 [Cucurbita moschata][more]
BLAST of Carg21232 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21232 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G0773.1e-3393.24uncharacterized protein LOC111449485 OS=Cucurbita moschata OX=3662 GN=LOC1114494... [more]
A0A287WWX47.9e-0535.71ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 ... [more]
A0A287WWX65.1e-0450.00ELMO domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 ... [more]
BLAST of Carg21232 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21232-RACarg21232-RAmRNA