Carg21202 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21202
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPeptide chain release factor 1
LocationCarg_Chr18: 7141856 .. 7146989 (+)
RNA-Seq ExpressionCarg21202
SyntenyCarg21202
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGAGATCAGAAAGTATGGATTTAGAGGAAATTGAGAGAGATGATACGACACCTGGGAAGGAGACGGGCGGGAACCGGGAGAGAATCCGAGCAAGATTCTGGCTTCATCGCCCTGCATTTCGATCTCAATATCTCCTTGTCCGTGGTCTCGCCTTCTTCCACGTTTATCAATCTTAGCACTCCGCCGCTGTGAAGATTGGTACAGCCCAATAACAAAGATTATATTGGGCTCAAAAGCTCTAATGCTAACGGGCTTCGAGCCCGTTTCAGACAACACTTCCTCCTAGGGATTTGAGAAACAAGAGCGATATGGGAATCAATCGAGCTACTGTAGGGCTTGTTCATCACTCCGATCCCTCGCCCCACATTGGCGCACAAATCCTGCATCATTCGAGCCCGTTTCGGCTCCAACTTTTCGTTTTTGTTCTTCAGGTTCTCATCTTCTCGTCTTCTCATCTTCCATCTCTTTTGATCTCTTTTATTTCTTGTTTTCTTCGTTTCAATCAAGTTATCCTCGGCTTGGGCTTAGTGATGGCTTACTGAATCTTCGCTGTTCTTACGTTGGGAATTGGGATGCTATCGATTATCTGTTACTTTTTGAGATCTTTGTCTGTATTTTTGGAATGCTTGACCTACTAAATCTGTGGATCTCTTCAAACTTGTTTAAAATAGGCAAAGTACGATCACATTGGTTATCAATGGAGCTTATCAATGTAATAGAACAAAGGTTGATGGCCATGAGCTCAGGAGTATGTTTCTTCTAAGTATGATCAACCAGGTACCACTTGTTCTTACTTTTCTTGTGCTTTCTCCTTTGTTGTATAGACATCACATAGCTTGGAGATTTAGTATTTAAGTACTGTGTTGAAGCTGAACAATAGATCGAATTAGATAAAACTGATTGATGTATCATATTTGCTCTTTTATTATAGTCAAATATCTTGTATTCATTTTATTGTTTTTCTATATCTTTGTAATTTACTTGATGATGATAAGGAGAGTTTCCCCACCATTTAAGTGTGCGATGATTTTAGCAAATATTCTCATTGTATTAGAGCCTTAGAGCCTTTTTGGTTTAGCAACCCTAATCCTTTATTTTCGATTAAGTGCGATTGTTTTAGCCAATATTCTCATGGTATTATTAGAGTCTTAGAGCCTTTTTGGTTTAGCAACCCTGATCCTTTATTTTCGATGGCTTTTGAATCCTTTACTCATTTTCTTCTCCACCACCATTATTGGGTTCGATTGTGCAGGAGCAGTCTCCATGGCTGCCGGATTGGCTCTACCTGTTTGGCCTCCAAATCATCCTTCGTAGGCCCACCCTTTGCCATACTCTATCCATACCACCTCACCTTCTCCAACACAATTGGTTTCCCCTCAGCCAACATAGCCTCTCTCATGTTCTTCCCAATCAGCCCTTCATTCTTCACGGAAACCCTAATCTTAGCATTCTCATCAGCACGCTCTAATACCATGAGAATATTTACTGAAACCACCACACCTAAACGGTGGAGAAATTTTCTATTTCTAATTATCAAATAAATTACAGAGGATATGGAAAGAATAATAAATAGAATTGGATACAAGATATGACAAATATGATATATTTATAATCATTAAATAAATTACAGAGGATATGGAAAGAACAATAAATGGAATGTGCAATAATAGATACAAGATATTTGACTATAATAAAGGAAAAAAATATGATATTTATGGTAAGTTGTAATGGAAGTAAATATCTAGATATTTGCCTATAATAAAAGGTCAAATATGATATATATGGTGAATTTGAACAAACGTGAAGCTTGGATCTGAAAAATTCAAAGAGAAGTCGAGAAACACTTTTTGTGAAGATGTCAGCTACCTGGTTAAGAGGAGATGTCTGGTTGGGCGACGTAGTATTTTCTTGGCCATTGAAAATTGCAGAGGGATCATCGGGAAGCGTTGATGTTGCCTTGGCTCCGACAAGAACATGTCTAATCCACTCCTGATGGTCTCTTTATTAATCACTTAAAATATGCTTGAGATATTCTTACTCGTGCTCATTTGTTCGATAGCAAACCAGTCCACAAGGCGCAGACTCCACTCCGTCTCTGCCCCTCTTTTTCTTTCTTTGGCTAAAATACACGCCAGAGTCCACATTCTCGGTTTCTGCCCTCTTCTTCCTCTCTTGCTCTGACTGCCACCACGTCCACCCTTCCTTCTTCACAGCCACCATTGAACCCTCTCTCTATCTCGGGCCCTTTTCTCAAAATAGAGCTATTGCCCAGATTCTAAACCCTCTACCTTGCGTCTCTATAGTCCCCACTCTAGGGTTGTTTCTCAATTGTTGATGGTTCTTCTTTCTCTGTTTTCATACTCTCTCTCGTTCCATTTCAATTTCATTTTTAACAGCAATTTCTATATCTTCCAATGTTGGATTTGCATGAATTCTTATGAAGATTTTCCATTCTCTCTCTCTCTCTCTCTCTTTTTTTTTCCCTATTTGCGGCTTGACAAGACCCTTATAATGGTCCTTTCTCTATTCTCCTTCTTCCTCTGGTTTTTCCCCCTCCTAGGAGCTAAAGTAGCATTGCCGTTACCCAACGATCCCTTCGTAGTTTTCTATGGTCAAAAATACATGCCGCTCAACTATATGTCTCCTCTTAACCAGGTTGCTGGCATCTTCATAAAAAGTGTTTCTCGACCTCTTTTTGAATTTTTTAGATCCAAGCTTCACGTTCGTTCAAATCTGTCTCTCAGCTGGGTGGTATGTCATGGATATTTATCCCTGAATTATAGTTTACCATATATATATATGTCATATTTGACCCTTTATTATAGACAAATATCTAGATCTTTGCTTCGATTACGGCTTACCATATGTATCATATTTTCCTTTTATTATAGCCTAATATCTTATATTCATTTATTGTTCTTTCCATTTATTGGTTTTTCCATATCTTTTTGATTTATTAGATGATTATAAATAGAGAATTTTCCCACTATTTAAGTGTCGGTGACCGTAGAGAAACTTGTAGAATTAGTGGGGTGACAGTAGAGAAACTTGTCGAATTTTTGGGAGAATAAAACTTTATAAGGATACATAAAGTTATATTCTTCCTTTTCCACCGAGTGCCAACATATACATACATATCTGTTACCTATTTAAATATATATAGGTAATTTGAGACCTTTCCTAATATATTATGAATCTAAAAACATGCATCATGTACATCTATTCGTACATGTATTACAAGTGATTCTTCAACACACTGAATGCTGCAGTTTAGACTTCATTTCATCTTTCTGAACCACATCTTAGTTCTTGCACATCCCGATCTTTCTTTTGAGTTTCTCAAACAATGAATGTTTCAAGGGCTTTGTGAATAGATCTTCAATTTGCTAATCACTTATGCAAAACTCGAGCTCAACAGTGTTTTTTATACCCAAATCATGCAAGAAAAACAAAATTTCGATGTGCTTACTCCTTCCATGCTAATTTTTAGACAACTTGATAGTTAACATATTATCACAGTAGATAACAGTCGAGCCGGGTTGCTTATGATCAAGAATTTCAAGTATCTTGTTTAGCCAAATTGCCTGGTTGCTTATGATCAAGAATTTCAAGTATCTTGTTTAGTCAAATTGCTTGGCACAAACATGCTGCTTCTACCACAAACTATGTAAGCAAACTCTGCTTACATAGTCAAAAGTGTCACAATAGACTTCTTTGAAGACAAGCAAAAATTTTCTGAACTCATCATGAAAACACAACTTGAAGTACTTTTGCGATCATTATGTGACACTTTCAACTACAAGTAGAGTGTGTGGCAGTAGCACCATGGCTCGTGCCAAGCAATTTGGTTAAGAAAGATGCTTAAAATTCTTGATCAGAAACAATTAGGTTTGATTGTTATTAGTTGTGTTAATATTTCAACTATCCGTTGTCTAAAAATCTTGTGTTGCATGTAAGAAGTAAATACATCGATGTTTAGTTTCATTTCTTGAGTGATTTGTGTAAAGAAGGCTCTGTTGAACTCAATTTTTGTAAAAGCAATGAGCAAACTGCAGATCTATTCACGAAGTCCTTAAAACAACCATTGTTCGAGAAGCTCATAAGAATGACGAGGATGTGTAGAAAATCCAAGATGTGGTTCAAGAAGATAAAGTGAAGTCCTAAAGTGTTTTATATAGAATTCAATTTAAGGAAGCGTGTTGAAGAGTTACCTACATGAAGATTCATTGGTCGATAATAAATTAGTTCATGCATTCTTAGTTACACGTGTTAGATTCATACAATCATGTTTTTAGATACAAGATACATGAATGGTATCGAAGAATGTCCCAAATTATGGCACTATGTGGAAAATGAATAATGTAATTTCCTGCATCCTTATTCTATTTGCAAAACCCATGACTTGCCAGTCATTCACTGCTTCTCCCTTTTGCATTTGGTGAATTTCAATGTCTCTGAGGCTGAGCACGTTTCATTCTTGTTGAGCCTCTCTCTAGCAGTTGGGGAGGAGAACGAATCATTCTTTATAAGGGTGTGCAAATCTCTCTCTAGCAGACACGTTTTAAAAACCTTGAGGAAAAATCCAAAAGAGAAAACCAGCGGTGGGCTTGGGCTGTTGTTTTTGGCCACGAAGCTTATTTTTTGCCATGGATAAGTTCAAAGTCTGCTTTATCAAGAGGCTTATTTTTTTTTTTGCCACGGATAAGTTCAAAATGTAAGCGACAATAGCATAGCGTGCTCGGTATCATTGGTTATAATATTTCGACAAACTCGAAAGGGTTATTTTGTTTGGGTCAAAACAGGTATGAGAGACGCACATAAGAAAAGTTGGAAGTATGAAAGTGGTAGACATAACGGAACCAGATCATGAAGAATATGAGGTGATTTTATATATGGTGAGTTTCATTTTCCTTTGAAGTAAAATGTATATATATTTATGGCCTTCCTTCATAAGAGGCTGTTGCTGCATATCATGAGCCTTTTAACATTATTTAAAAGTATGCCATTGAGGAAGCAATGCAGGGGCAGAATCTGGATATGTTCGTGGACGCTCTGTTATTGAATTCTTCACTTCATGTTCTTCGTAGTGGCAGTGAAGACGCAAGAGAAGAGCGTTGCATCACGTAG

mRNA sequence

ATGGATTGGAGATCAGAAAGTATGGATTTAGAGGAAATTGAGAGAGATGATACGACACCTGGGAAGGAGACGGGCGGGAACCGGGAGAGAATCCGAGCAAGATTCTGGCTTCATCGCCCTGCATTTCGATCTCAATATCTCCTTGTCCGTGGTCTCGCCTTCTTCCACACAACACTTCCTCCTAGGGATTTGAGAAACAAGAGCGATATGGGAATCAATCGAGCTACTGTAGGGCTTGTTCATCACTCCGATCCCTCGCCCCACATTGGCGCACAAATCCTGCATCATTCGAGCCCGTTTCGGCTCCAACTTTTCGTTTTTGTTCTTCAGTATGCCATTGAGGAAGCAATGCAGGGGCAGAATCTGGATATGTTCGTGGACGCTCTGTTATTGAATTCTTCACTTCATGTTCTTCGTAGTGGCAGTGAAGACGCAAGAGAAGAGCGTTGCATCACGTAG

Coding sequence (CDS)

ATGGATTGGAGATCAGAAAGTATGGATTTAGAGGAAATTGAGAGAGATGATACGACACCTGGGAAGGAGACGGGCGGGAACCGGGAGAGAATCCGAGCAAGATTCTGGCTTCATCGCCCTGCATTTCGATCTCAATATCTCCTTGTCCGTGGTCTCGCCTTCTTCCACACAACACTTCCTCCTAGGGATTTGAGAAACAAGAGCGATATGGGAATCAATCGAGCTACTGTAGGGCTTGTTCATCACTCCGATCCCTCGCCCCACATTGGCGCACAAATCCTGCATCATTCGAGCCCGTTTCGGCTCCAACTTTTCGTTTTTGTTCTTCAGTATGCCATTGAGGAAGCAATGCAGGGGCAGAATCTGGATATGTTCGTGGACGCTCTGTTATTGAATTCTTCACTTCATGTTCTTCGTAGTGGCAGTGAAGACGCAAGAGAAGAGCGTTGCATCACGTAG

Protein sequence

MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLPPRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQYAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAREERCIT
Homology
[Close]
BLAST of Carg21202 vs. NCBI nr
Match: KAG7012694.1 (hypothetical protein SDJN02_25447, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 6.3e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLP 60
           MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLP
Sbjct: 1   MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLP 60

Query: 61  PRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQYAIEEAMQGQ 120
           PRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQYAIEEAMQGQ
Sbjct: 61  PRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQYAIEEAMQGQ 120

Query: 121 NLDMFVDALLLNSSLHVLRSGSEDAREERCIT 153
           NLDMFVDALLLNSSLHVLRSGSEDAREERCIT
Sbjct: 121 NLDMFVDALLLNSSLHVLRSGSEDAREERCIT 152

[Close]
BLAST of Carg21202 vs. NCBI nr
Match: XP_022967111.1 (uncharacterized protein LOC111466613 isoform X1 [Cucurbita maxima])

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-22
Identity = 65/106 (61.32%), Postives = 69/106 (65.09%), Query Frame = 0 

Query: 70  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ------------------- 129
           MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                   
Sbjct: 1   MGINRATVGIVHHSDPSLHIGAQILHHSSPFLLKLFVFVLQKRRSTITSVINGAYQRNKT 60

Query: 130 ----------YAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAR 147
                     + +    QGQNLDMFVDALLLN SLHVLRSGSEDAR
Sbjct: 61  KVDGHELRSIFLLNMIGQGQNLDMFVDALLLNPSLHVLRSGSEDAR 106

[Close]
BLAST of Carg21202 vs. NCBI nr
Match: XP_022967112.1 (uncharacterized protein LOC111466613 isoform X2 [Cucurbita maxima])

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-22
Identity = 65/106 (61.32%), Postives = 69/106 (65.09%), Query Frame = 0 

Query: 70  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ------------------- 129
           MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                   
Sbjct: 1   MGINRATVGIVHHSDPSLHIGAQILHHSSPFLLKLFVFVLQKRRSTITSVINGAYQRNKT 60

Query: 130 ----------YAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAR 147
                     + +    QGQNLDMFVDALLLN SLHVLRSGSEDAR
Sbjct: 61  KVDGHELRSIFLLNMIGQGQNLDMFVDALLLNPSLHVLRSGSEDAR 106

[Close]
BLAST of Carg21202 vs. ExPASy TrEMBL
Match: A0A6J1HPV4 (uncharacterized protein LOC111466613 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466613 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 65/106 (61.32%), Postives = 69/106 (65.09%), Query Frame = 0 

Query: 70  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ------------------- 129
           MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                   
Sbjct: 1   MGINRATVGIVHHSDPSLHIGAQILHHSSPFLLKLFVFVLQKRRSTITSVINGAYQRNKT 60

Query: 130 ----------YAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAR 147
                     + +    QGQNLDMFVDALLLN SLHVLRSGSEDAR
Sbjct: 61  KVDGHELRSIFLLNMIGQGQNLDMFVDALLLNPSLHVLRSGSEDAR 106

[Close]
BLAST of Carg21202 vs. ExPASy TrEMBL
Match: A0A6J1HR48 (uncharacterized protein LOC111466613 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466613 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 65/106 (61.32%), Postives = 69/106 (65.09%), Query Frame = 0 

Query: 70  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ------------------- 129
           MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                   
Sbjct: 1   MGINRATVGIVHHSDPSLHIGAQILHHSSPFLLKLFVFVLQKRRSTITSVINGAYQRNKT 60

Query: 130 ----------YAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAR 147
                     + +    QGQNLDMFVDALLLN SLHVLRSGSEDAR
Sbjct: 61  KVDGHELRSIFLLNMIGQGQNLDMFVDALLLNPSLHVLRSGSEDAR 106

[Close]
BLAST of Carg21202 vs. TAIR 10
Match: AT2G47020.1 (Peptide chain release factor 1 )

HSP 1 Score: 41.6 bits (96), Expect = 6.7e-04
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 0 

Query: 106 VFVLQYAIEEAMQGQNLDMFVDALLLNSSLHVLRSGS 143
           V +  +AIE+ MQG+NLDMF+DALLL   +  + S S
Sbjct: 374 VGITHHAIEDMMQGENLDMFIDALLLRQEMDAIASFS 410

The following BLAST results are available for this feature:
BLAST of Carg21202 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012694.16.3e-81100.00hypothetical protein SDJN02_25447, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022967111.13.9e-2261.32uncharacterized protein LOC111466613 isoform X1 [Cucurbita maxima][more]
XP_022967112.13.9e-2261.32uncharacterized protein LOC111466613 isoform X2 [Cucurbita maxima][more]
BLAST of Carg21202 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21202 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HPV41.9e-2261.32uncharacterized protein LOC111466613 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HR481.9e-2261.32uncharacterized protein LOC111466613 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Carg21202 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47020.16.7e-0451.35Peptide chain release factor 1 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21202-RACarg21202-RAmRNA