Carg21173 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21173
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr01: 11048544 .. 11051298 (-)
RNA-Seq ExpressionCarg21173
SyntenyCarg21173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGTTCTAATCTCAAGCGGCTGACGTCTCTTGTGGTCCTACTCATTCGCCGGAAGGAGCTCCACAAGGTTTTACTTGTTTATGCTGTATATTTACTCTAATTTTTACTCAACTCGACTGCTCGTTTTTGGAGTGTGAGGAAAAACACTAAGGACTTCGTTTTTTTGCTCATGTTATTGCTTGCGGTTGTATGCGAAGTTTTAATATCATGCCGCGTCTGGACTAAGGGGAATCTGTTAGTTTTCTTTCTCCTCTTCATTCTCAGTGTTGGCCGCGTCTGGACTAAGGGGAATCTGTTAGTTTTCTTTCTCCACTTCATTCTCAGTGTTGGTAGCGTATGCGTTCTTATTAAATAAAATTATATGGTTTCGTGTAACGGATTTGTGTGGAAAAATATTTCGACGTCAGAAACTATGAGTGACGATTTCTATTGAAGTATATCCTTCTCGGAAATTGCATCAGTTTTTGGGTTTGAGTTTCGTATTGTTCTTTAATTTCTCAGTTATTTGAGATGATTGAAATTGCGAAGAGACTTTATGGAAAGTTGAATACAATTTTTATGAATGCTGTCCAGGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGTAATAAATTAAAGCATTCTAAGTTTTAGATTCCTTGATGCATTGTCGTTGAGTCATGTGGGAAATCCGTCATTGTGACAGTTGTATGGGAGAGTCGTGATTAGTTCTTGTTCCAGTTAACTCTCAGTCTTTTCTCTGCCAGGGCTAGGGAGAAGCTAGAAAAGTTGACTAAGCATTTTGATTATTTGAATCTGTGGAAGAAGATACTGCTATTGGAGGTCTAGCACTGTCGGCACCACTTATTATGGTCTTCTAAATGCTTTGACTGAACCAGGCCAGTTTCTACAAGAAGTCATTTCTTAAGCTGCTTACTCAGTGGTTACTGTACTTTATCTATGTTGGATGATAAAAGTCCCACATTGACTAATTCAGGGAATGATCATGAATTTCTAAATAAAGAATACTCTCCCTATTGGTATGAGGCCAAAGCAAAGCCATGAAAGCCTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCCTGTTCGTCTAACAATCTGCAGTACAAAGCTCATAATAATGTCTCCAGTCCTGTAAGTTCAAATGCTTTATGGCAGCCACATTTCAATTGGAACAATTAAGCGTTGCAGTTAAATTTGGTTGATAGTGTATTAGACTTATTTTCAGTTGATAGTGGTATTAAAGAGATTATGGTTGTGTATTTTAGTTTCTAGTTAGTGTTTATTTGGCTCGATAGATTTGGAAGCTTTTCTATGAATGGTAGTATTGATGTGCAATCTCTTCAACGGAGAGAAGTTTCGGGCTTCTTTATGGTCTTTGTAGAGGAAAATATAATCTCAAATGTTGGATGATAAAAGTTCCACGTTGGTTAATTTAGGGAATGATCATGAGTTTATAAACAAAGAATGCTCTCTCTATTGGTATAAAGCCTTTTGGGGAAGCTCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGATAATATCATGCCACTATGGAGAGACGTGTTCGTCTAACATTAAACGAGTTACTACCTATTTGATACTGTTTATATCCATCAAGAGCGATGCATATACCTTTGTCGTTTTACCAGTCTGACACTGTATATTTCTTCTTTAGCTACAATGGATGCATATAAGCTTCCAAATTAATTACGTTCTCATAGCCATAGGAGGATATTTACTCCCCACTGCTCATTCTGGTCTGACCCACAATAATTCATGCATGTTCTGAAATTTCCTTGAGTGGCTCATGCTCCTGTGGGTACCTAGAGCTACAAGTTTGTGCACCTTGATTCACTTTTCAGACATAACCCTTCCATTCATCAATTGTAATACATTTTTTCTTTAGGGTTTTGGGATTCTGAAAGATGTCCATGTAGTTCACAAGATTGTGCTGGAAATGAAGTCTTGTCATGATTTCTTGATTGATTGAACAGCATACACTGAAATGATTGATGCTTTGCTCAACTGTGGCTGTATAGACGGTACGTCATGTTTATACATAACTAGTAAGCGGCAGGATAGGGATTGAATTGTACAGATAGATAATTAGTTTATGCAAATAGACAAATGTCTTTAGTTGAACTGTACAGGATAGAGCAAATGTCTTTATGCATAGCTCTTCTTGGTTTTTGGTTGGTGTGGGGTATAGTTTACATGAACTTTTGAGCATTTTGTCTATTTGTTTTCGTACCTTTAAAATGTTCCAATTGGGTTAACATGTCAAGCTAATTAGTTTATTCTAACTGTTAGTAGCATGATGCCAAATTCTACCCAAATATCCTAGTGAAGCGACTTTTGAGTATTTGATGATAGAAATGGAGCTTGTTTTGAAGGCAACAATCAACAAGTTGCATGATAAACTTGGCCAGATATTTGTTAATGTTCTTACTGAAGGATGAAGCTAAATTTGAACAGGATTTCAAGGCCTGA

mRNA sequence

ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGTTTTGGGATTCTGAAAGATGTCCATGATGAAGCTAAATTTGAACAGGATTTCAAGGCCTGA

Coding sequence (CDS)

ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGTTTTGGGATTCTGAAAGATGTCCATGATGAAGCTAAATTTGAACAGGATTTCAAGGCCTGA

Protein sequence

MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEAKFEQDFKA
Homology
[Close]
BLAST of Carg21173 vs. NCBI nr
Match: KAG7037564.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 2.6e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEA 60
           MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEA
Sbjct: 1   MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEA 60

Query: 61  CAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEAKFEQDFKA 116
           CAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEAKFEQDFKA
Sbjct: 61  CAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEAKFEQDFKA 115

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: KAG7024513.1 (Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 6.4e-17
Identity = 67/167 (40.12%), Postives = 78/167 (46.71%), Query Frame = 0 

Query: 1   MVSFS-VSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTL--- 60
           MVSFS + SAL TT+GEDA  R+I+LSS G   IR +ERIFL  S  HG  PA   L   
Sbjct: 1   MVSFSCILSALTTTIGEDAMDRVILLSSFGMESIRLNERIFLFTSFSHGRRPASDRLSPE 60

Query: 61  --------------------------------------------------------LGEA 108
                                                                   + EA
Sbjct: 61  SQSQAADLSCRQTHPSEAAPPVSRNGFVWNNIFDIFEEIEIAKRRYGKLNTIVMNAVLEA 120

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: KAG6608207.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-13
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 54  KTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG 97
           K L  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYG LLKG
Sbjct: 249 KELHKEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGMLLKG 291

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: XP_011652532.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: XP_022936929.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. ExPASy Swiss-Prot
Match: Q8VYD6 (Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana OX=3702 GN=CBSPPR1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-07
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCG+IDLA +   EM++P   GVD++SY T+LKG G  + + DEA
Sbjct: 85  EACVHCGNIDLALRMFHEMAEPGGIGVDSISYATILKGLGKARRI-DEA 132

[Close]
BLAST of Carg21173 vs. ExPASy TrEMBL
Match: A0A0A0LHF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881850 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. ExPASy TrEMBL
Match: A0A6J1FEL4 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443370 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. ExPASy TrEMBL
Match: A0A6J1F9Q1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443370 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. ExPASy TrEMBL
Match: A0A6J1CDP2 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010707 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.1e-10
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLKG G  + V DEA
Sbjct: 89  EACVHCGDIDLALRTFYEMSKPDNCGVDNVSYGTLLKGLGEGRKV-DEA 136

[Close]
BLAST of Carg21173 vs. ExPASy TrEMBL
Match: A0A6J1CDX0 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010707 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.1e-10
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLKG G  + V DEA
Sbjct: 89  EACVHCGDIDLALRTFYEMSKPDNCGVDNVSYGTLLKGLGEGRKV-DEA 136

[Close]
BLAST of Carg21173 vs. TAIR 10
Match: AT5G10690.1 (pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCG+IDLA +   EM++P   GVD++SY T+LKG G  + + DEA
Sbjct: 85  EACVHCGNIDLALRMFHEMAEPGGIGVDSISYATILKGLGKARRI-DEA 132

The following BLAST results are available for this feature:
BLAST of Carg21173 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037564.12.6e-58100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7024513.16.4e-1740.12Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyr... [more]
KAG6608207.14.3e-1390.70Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_011652532.11.3e-0969.39pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Cucumis sativu... [more]
XP_022936929.11.3e-0969.39pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita mosc... [more]
BLAST of Carg21173 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VYD62.8e-0753.06Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg21173 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHF86.2e-1069.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881850 PE=4 SV=1[more]
A0A6J1FEL46.2e-1069.39pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Cucurbita mo... [more]
A0A6J1F9Q16.2e-1069.39pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Cucurbita mo... [more]
A0A6J1CDP28.1e-1073.47pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Momordica ch... [more]
A0A6J1CDX08.1e-1073.47pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Momordica ch... [more]
BLAST of Carg21173 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G10690.12.0e-0853.06pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protei... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21173-RACarg21173-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003729 mRNA binding