Carg21132 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21132
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 7985544 .. 7985774 (+)
RNA-Seq ExpressionCarg21132
SyntenyCarg21132
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGGTTCAACCATTATATCAGACCGTCCGGTATGGTCGGACCGTTTTCGGTTTACCCGAACCGACCTCCGATTGACGTAGGGTTCCGTTCTTGCGCGCTTCTTTGCGATTCAATTTCCTCCGGTCCACACGCTGCTGTTCTCTTTTCTCTCTCCCGCCACCACGCCGTCGTCGGTCTTTTTCTCACACCGCCGCCAGTTCCAGAGTCTCCAGCGACTCTCCGATGA

mRNA sequence

ATGGTAGGGTTCAACCATTATATCAGACCGTCCGGTATGGTCGGACCGTTTTCGGTTTACCCGAACCGACCTCCGATTGACGTAGGGTTCCGTTCTTGCGCGCTTCTTTGCGATTCAATTTCCTCCGGTCCACACGCTGCTGTTCTCTTTTCTCTCTCCCGCCACCACGCCGTCGTCGGTCTTTTTCTCACACCGCCGCCAGTTCCAGAGTCTCCAGCGACTCTCCGATGA

Coding sequence (CDS)

ATGGTAGGGTTCAACCATTATATCAGACCGTCCGGTATGGTCGGACCGTTTTCGGTTTACCCGAACCGACCTCCGATTGACGTAGGGTTCCGTTCTTGCGCGCTTCTTTGCGATTCAATTTCCTCCGGTCCACACGCTGCTGTTCTCTTTTCTCTCTCCCGCCACCACGCCGTCGTCGGTCTTTTTCTCACACCGCCGCCAGTTCCAGAGTCTCCAGCGACTCTCCGATGA

Protein sequence

MVGFNHYIRPSGMVGPFSVYPNRPPIDVGFRSCALLCDSISSGPHAAVLFSLSRHHAVVGLFLTPPPVPESPATLR
Homology
[Close]
BLAST of Carg21132 vs. NCBI nr
Match: KAG7027636.1 (hypothetical protein SDJN02_11651, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MVGFNHYIRPSGMVGPFSVYPNRPPIDVGFRSCALLCDSISSGPHAAVLFSLSRHHAVVG 60
          MVGFNHYIRPSGMVGPFSVYPNRPPIDVGFRSCALLCDSISSGPHAAVLFSLSRHHAVVG
Sbjct: 1  MVGFNHYIRPSGMVGPFSVYPNRPPIDVGFRSCALLCDSISSGPHAAVLFSLSRHHAVVG 60

Query: 61 LFLTPPPVPESPATLR 77
          LFLTPPPVPESPATLR
Sbjct: 61 LFLTPPPVPESPATLR 76

[Close]
BLAST of Carg21132 vs. NCBI nr
Match: KAG6595676.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1  MVGFNHYIRPSGMVGPFSVYPNRPPIDVGFRSCALLCDSISSGPHAAVLFSLSRHHA 58
          MVGFNHYIRPSGMVGPFSVYPNRP IDVGFRSCALLCDSISSGPHAAVLFSLSRHHA
Sbjct: 1  MVGFNHYIRPSGMVGPFSVYPNRPQIDVGFRSCALLCDSISSGPHAAVLFSLSRHHA 57

The following BLAST results are available for this feature:
BLAST of Carg21132 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027636.11.1e-36100.00hypothetical protein SDJN02_11651, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6595676.11.6e-2498.25Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of Carg21132 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21132 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21132 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21132-RACarg21132-RAmRNA