Carg21130 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21130
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 7988514 .. 7991766 (+)
RNA-Seq ExpressionCarg21130
SyntenyCarg21130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTTCATCTCTCCGTTGCTAAGTTTCTTAGTGGTATAGTGCCTTGCTTCAAGGATATGACAGCAAAGCTAACGTCAAAGGTGGTGCCTTCTTACAGCTCGTTGGATTCAGCTTCTCTCAACTATTGCCTTATTCATATTGGTACTTTCTCTCTCTTATCTATCACTTTCTTTCCCTTTTGGACTTGGGAGGAGATTTCATTTTGCATTATGATTTCTATGTGCTAGTGATTGAGATATGCAACGAACCCTAAATAGTGCAGACCTCAAAAAGCTTTAGGAGGCATCTTGTCGATCATTGAATGTAACAGCCCAAGCCCAAGCTCACCGCTAGTAGATATTGTCCTATTTGGGTTTTCCCTTTCGGGCTTCTCCTCAAGGTTTATAAAATGCGTCTGGTAGGGAGAGGTTTCCACACTCTTATAAAGAACGCTTCGTTCTCCTCCCCAACCGATGTGAGATCTTACAATCCACCCTCTTTTGAGGCCCAGCGTCCTCACTGGCACTCATTCCCTTCTCCAATCGATGTGGGACTATCCACCCCCCTTCGGGGCCCAGCGTCTTTGCTGGCACACCGCCTCGTGTCTACCCTCCTTCGGGACTCAACCTCCTCGCTGGCACATTGCCTGGCGTCGGCTCTGATACCATTTGTAACAGCCCAAACCCACCGCTAGTAGATATTGCCTTCTTTGGGTTTTTCCTTTTAGGCTTCCCCTCAAGGTTTTTAAAATGCATATGCTAGAGAGAGGTTTTCACACCTTTATAAAAAAAAATGCTTCGTTCTCTTCTCCAACTGATATGGAATCTCACATTGAATCTCTTTGACAGACGATCTATTGCGAGTTGACTTCCATCAATTCACTTTGCTTTGCTTCCCTGAGTACAATCGCTCCATTGCAAAATCCCTCTCTTGGTTCGTTTCTCTCATTGGTGATCAACGTGATAACACTTCCATAGCTCAACTAATTAGTATGAAAAACAAAATTTTCATTTCAACATTGACATTCGTAGTTAGCATAATAAATTCATACTCTAGTTCTTGTTATCACGATTTTGCTATCCAAAACCTATTTCCTTCGTTCTATTAATGTTCTTGACAAACATATGCATTAGGTTTTTTGAATTACTATATTTCACTTGATTACTCTAACTGCGAGAGCTCTTGCTTCACATTAAATATTGGTCTTATAAACAAGTTTTGCATCACTTGAATATATATCGCAAGTAAGAATATATTTGCCGCTGAAGTTTTCTTTCCCCTGTTTGTAGATTCAGAATGGTTGATGAGATTTGGCGAGCCTATGAACCTAACATAATGTGCTCTTGAGCAAGCATAAAAAATACCTCACTGCCGTGTCAAAGTCAAGGTAAGAAAGGGGAATTGATGAAGGCATTATCATAAGCTCATCTATGTGATTTGAGTCGTTTTGATCTTTATTTGGAAATACTTATAAACCAACATAGGTATTCAGAAAAGTGCTTGGAATAGTTGTTGAAGGCGTTATAATAAGCTCATCTATGTGGTTGGCCGAATAGTTGTTGGAGCTAATGACAAAAGTGCTCGGAAGGAATGAACAAGTTCAAACTATGAGTATTCACAGAACCAAATCAAGTAAATGAAGTAGGGTCAGATTGGATTAAGCCAGTAAAAGGGAGACATGCCATCTTAGAGATTTTACTATTGGATGAACTTAAGGTAATTAGATATGTATGCATTTTGTTCCGGTATATGATTATGTGGTTGTAGTTAATATTTGTTAAAGCATTTATGGGACCTCATGCATGTATAAAATGTCACAATATTTATGAAATAAAGCTCGAGACAATTACTCATTAGTGGATGAGTTAATTGTACCACCATGATTATAGGTAGTTGAGTTACATTTTAGTTCCCGATCACGGGTTAAATGACTAGGATTTTAATTTTTTGGTCATAGACAAGTCGGAAAGTATTTTGACTTTTAGTCACAGGTCAGATGATTAGTGTTTTCAAGTCTAGTTAGGGACATAGGCTCAATGAGTTGTTTTGAACAATTTTAGATTCATTGGTTTTACATTAGATTTTATCGCGTCTATGTAAGCATATCTATCTAAGTAGAGGGTTACTTATTGAGTATTTTCAATACTCATTTTTTTTTGTTCGGGTAAAGGCTTACAAGGTGTGATGAGATCATTTGCTCGTGGTGCTTAGGAGTTTGTAACCTCATGTATAGTCTTGCTTTTGCATTATCTTTGAGTATTTGTGGGTTTTGATTCGAGTTTTCTTTATGGAAACTATTTTAGAGTTGGTATTTATAAGATGTTTTAGCGGTGTAATTATTAGCCATTTCAAGGAACCTTAAGCAAATTTTGCCTATTTTCATAATTTTCTTTTCTCGAGTTTTAAAATGATGACGATCCATGTTGGTCTAGGTTTAGGAAAGTTGGATTGTTACACACTCAATTTGCCTATCTCGATCTCATCTCTGGCTCCTCTAGCTTTGGTCTTTGATCACACTATCGATAGTCCCATTAACAATCACCACTGCACACTGTGTTCTCTTTCACATATGCATAGTTCAATCTACACCCTCTTTGGATCTCATTTTTCTCTCTCTCACCCTCGGTTCTGATTGATCCCTCACTCTCATTTTGCTTCACTGTCTCTACTTTCCCAGACATTGTCCAACGTTCGATTGCCACTGACATAGAAGTTTATACAGCGAATGAAATTTGGGGTTTGGGTCTTTAGGTTTGAACAACAACCTCATCAAGTTAAACTGTGAATTGGAATATTTTCGAATGCTATCCGGTAGGATCAAAGACACTTGTGGTGCGTTTTGTAGATAATGACGGACTAAATCACTCTTCAAATTCAATTTAATTGCAATCAAATTCACTTTATGTTCTTTTAGGTTGAAAGACAGTTTTGAAATTTGTAATTGGTGTGAATAACCTTTTCTAAATCAAATTTTCAAACAACATTTAATATCTCTATCAACTCTTCAAAAGGACATTAATAATGAAAACCGACCCACTTTTGTTTGAAGTCCAAATAACGTACATAATAATTCATACCTACAAATCTTGTATTAATCCTATATTTCAAACCCTCTTCAAACTCTTGAAACTCATATATTTAGGGGCACTTTCGGCGGCCGCCGTGGGTGGTCATGTCGGCGTAGCAAGGGCAGGCGTCGTAGTTGCCGAAAGTGCCCGGCGGCACGCAGCTGCAACAACCACAGCATGTGCCGCATGCCCTGTTGCATAG

mRNA sequence

ATGTTTTTTCATCTCTCCGTTGCTAAGTTTCTTAGTGGTATAGTGCCTTGCTTCAAGGATATGACAGCAAAGCTAACGTCAAAGGTGGTGCCTTCTTACAGCTCGTTGGATTCAGCTTCTCTCAACTATTGCCTTATTCATATTGGGGCACTTTCGGCGGCCGCCGTGGGTGGTCATGTCGGCGTAGCAAGGGCAGGCGTCGTAGTTGCCGAAAGTGCCCGGCGGCACGCAGCTGCAACAACCACAGCATGTGCCGCATGCCCTGTTGCATAG

Coding sequence (CDS)

ATGTTTTTTCATCTCTCCGTTGCTAAGTTTCTTAGTGGTATAGTGCCTTGCTTCAAGGATATGACAGCAAAGCTAACGTCAAAGGTGGTGCCTTCTTACAGCTCGTTGGATTCAGCTTCTCTCAACTATTGCCTTATTCATATTGGGGCACTTTCGGCGGCCGCCGTGGGTGGTCATGTCGGCGTAGCAAGGGCAGGCGTCGTAGTTGCCGAAAGTGCCCGGCGGCACGCAGCTGCAACAACCACAGCATGTGCCGCATGCCCTGTTGCATAG

Protein sequence

MFFHLSVAKFLSGIVPCFKDMTAKLTSKVVPSYSSLDSASLNYCLIHIGALSAAAVGGHVGVARAGVVVAESARRHAAATTTACAACPVA
Homology
[Close]
BLAST of Carg21130 vs. NCBI nr
Match: KAG7027638.1 (hypothetical protein SDJN02_11653, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MFFHLSVAKFLSGIVPCFKDMTAKLTSKVVPSYSSLDSASLNYCLIHIGALSAAAVGGHV 60
          MFFHLSVAKFLSGIVPCFKDMTAKLTSKVVPSYSSLDSASLNYCLIHIGALSAAAVGGHV
Sbjct: 1  MFFHLSVAKFLSGIVPCFKDMTAKLTSKVVPSYSSLDSASLNYCLIHIGALSAAAVGGHV 60

Query: 61 GVARAGVVVAESARRHAAATTTACAACPVA 91
          GVARAGVVVAESARRHAAATTTACAACPVA
Sbjct: 61 GVARAGVVVAESARRHAAATTTACAACPVA 90

[Close]
BLAST of Carg21130 vs. NCBI nr
Match: KAG6595677.1 (hypothetical protein SDJN03_12230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 8.5e-17
Identity = 67/117 (57.26%), Postives = 67/117 (57.26%), Query Frame = 0 

Query: 21  MTAKLTSKVVPSYSSLDSASLNYCLIHIG------------------------------- 80
           MTAKLTSKVVPSYSSLDSASLNYCLIHI                                
Sbjct: 1   MTAKLTSKVVPSYSSLDSASLNYCLIHIDDLLRVDFHQFTLLCFPEYNRSIAKSLSWFVS 60

Query: 81  ----------------ALSAAAVGGHVGVARAGVVVAESARRHAAATTTACAACPVA 91
                           ALSA AVGGHVGVARAGVVV ESARRHAAATTTACAACPVA
Sbjct: 61  LIGDQRDNTSIAQLIRALSAPAVGGHVGVARAGVVVVESARRHAAATTTACAACPVA 117

The following BLAST results are available for this feature:
BLAST of Carg21130 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027638.11.5e-37100.00hypothetical protein SDJN02_11653, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6595677.18.5e-1757.26hypothetical protein SDJN03_12230, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg21130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21130 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21130-RACarg21130-RAmRNA