Carg21125 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21125
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	39S ribosomal protein L46, mitochondrial-like isoform X2
Location	Carg_Chr07: 8021783 .. 8024475 (-)
RNA-Seq Expression	Carg21125
Synteny	Carg21125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATATTTTGAATGATTTTTTTTGTAGGGTCTTTTGAAACTTGCCTCTTTTGGTAGCCAAAAGTAATTATATGTTATACATAGGGTTAAAGTTCACGACTTCCTTGGAGGCTGCTAAGTTGAAGCTTTTTGGTGATGAATCTTAGCGCTTCCGTCAGTAAAGAGCCTAAATTACTGCATTTTTTGGTGGTCAATTTATTTTTTCTTTCGATTATCTGCGGGGATCACTGTAGGTGAAGGATGAGCAACTTTGTAGTTCCCCCTGAATATTATGTAGTGCATGTCTGTATATAACTATCACTTGTGCAATTAAGATTGGACGTCATCAATATTCAGTTAGCTAATTTTGTGGAGCTTATTGCGCAAACACTAGCTAAATGCAAATACATGACTTTTTTTTTTTCTTTTTCTTTTGGCGGTTGTATAACTTGAACTCTGCTGATAACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACGGAAGCTGACAAAACAAATGATAAGAAGTATGCAGTCCTTTTATTTATTTATTTAGAATTGATAGATTGAAGGTTTCCTTATCAATGCTATTTTGCGGGAAAATAATAATGCAGTTCATGTGCTCTTGTTCTTGTTCATGCTTTATAATTTTCATTGTTGTGAGGAGAGCCTAGTGGAACAACACGGATTTCTGAAGTGACAAAACAAGTGATATGAAGCATGCAGTCTTTTTTATTTATTTAGAATTGATAAATTGAAGGGTTCCTTAACAATGCTACCATCACTATTGGGGGAAAACAAAAACGCAGTCCATGAGCTCTTGTTTTTGTGCATGTTTTATGTCTTCATTATTACGAGGATAGCCTTGTGTTTCTTTATTTACTCTTCCAGTTCGCCAGTGTCCTCTTGCTTCTATTATTTGGTGACCATAAGTTGTGCTGATTTTCTTTTATTCTTGTAACTATATAATGCTCTTGTTGTGATAATATCATTGTCTGACTATAATTTTCTTACTTCTGGTTAATCGTGTTTTTCTTTTCCTGCAATTCTTTGATGCAACTGTCTTGATAATTGTACTAAGCCCACCGCTAGCAAATATGTTGTGCTGATTTTCTTTTATTCTTGTAACTATATAATGCTCTTTGGTCTTTCTCTTTCGGGCTTCTCCTCAAGGTTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATGAAGAATGTTTCGTTCTCCTCCCCAATCGATGTGGGATATCTCAATCCGCCCCTTTTGAGGCCCAGCGTCTTTGTTGGCACACAGCCTCATGTCCACCCCCCATTGTGGCTCAACTTTCTTAATGGCACATCGCCTAGTGTCTGGCTCTGATTCCATTTATAACCGCCCAAGTCCACCTCTAGCAGACATTGTTCTCTTTGGGCTTTCCTTCAAAGTTTTTAAAACGTATCTGCTAGGGAGAGGTTTCTACACCCTTATAAAGAATGTTTCGTTCTCCTCCTCAACCAATGTGTGACTCTGCAGTCTTGCATATCAAGAGCATGCTGCTACTTTAGGTGTACTCTACTCGTTTACTTTAGTGCTCTTACATCTTTAAAACCAGGGTTCTACTTGATTCATGTTGACCAATTAAACTTGTTTTATCCCTGCGAAAATCCATTCATTTGACTCTTGGGAAAATTGCAAGATATCATTGTATATCTCATAAATGTTGAAACTATATTACTTGGTTAATCTATCAGACTTATTGGCATCTTTCTTGCTCTAAACTGGAGTTCTTAGATGGTGTCTTTAAAATACAATGTCTCCGTATTTCTCACTGTTGATCTAGAGTTCAGGCTATCTGATCAAAGTCATTAGTTTGCCAGATTCTAAGATCAAAATTGAGGTCCGCATTCTGATTACTTGAATTCTCCTCTTTCCTTTTAGGTCACTGCAGAGAGCACTTGACAGAAGGCTCTACCTTCTTCTCTATGGTACCACTATTGGGGCACCTGATAAGAAACCTGTCTGGCACTTTCCAGAAAAAGTATACGAGACCGAGGAGACACTGCGTAAAGTGAGAGCCGGCTATCAATACTCTTCAATTTTCTCTCTCATCAATTTTACCCTTCTAACTTTCAAGTTCTGCAGTGTGCAGAGTCTGCCTTAGCGTCCATCCTTGGAGGTCTTTCTCATACATATTTTGTTGGAAATGCTCCTATGGCGCACATGGTTGTACCGCCTACACAAACTGCACAAGTTTCATCTCTGAGGGTATGTCTTCTACTAAAAATTTATATCATACAAGTTTCGGGAATTTTTGCTCGAACGTAGAGAGTATTACGTTTAGTATAATGTGGTTGTTTACTCGTATTCTTAAACGAACTCTCTCCTCTTTTCCAGAGGTTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAATATTGAGAAATGTGAAGATTTTGTGTGGGTTACAAAGGATGAATTGATGGAATATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCAAGTAGATTGATCATATAAGCCTCATAGATTGTTTCAATCAACAAATTCCTGGTGAGTTTGTAAGTGAAATGGAGGATCAAGTTATGAACGGCTAAATTAAGGGCTGAGGCTGGAGGCTGGAGGCTGGAGGCTTTGTTTGTTCTGATATAATCTGGATGAACGAGGAAA

mRNA sequence

AAATATTTTGAATGATTTTTTTTGTAGGGTCTTTTGAAACTTGCCTCTTTTGGTAGCCAAAAGTAATTATATGTTATACATAGGGTTAAAGTTCACGACTTCCTTGGAGGCTGCTAAGTTGAAGCTTTTTGGTGATGAATCTTAGCGCTTCCGTCAGTAAAGAGCCTAAATTACTGCATTTTTTGGTGGTCAATTTATTTTTTCTTTCGATTATCTGCGGGGATCACTGTAGGTGAAGGATGAGCAACTTTGTAGTTCCCCCTGAATATTATGTAGTGCATGTCTGTATATAACTATCACTTGTGCAATTAAGATTGGACGTCATCAATATTCAGTTAGCTAATTTTGTGGAGCTTATTGCGCAAACACTAGCTAAATGCAAATACATGACTTTTTTTTTTTCTTTTTCTTTTGGCGGTTGTATAACTTGAACTCTGCTGATAACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACGGAAGCTGACAAAACAAATGATAAGAAGTCACTGCAGAGAGCACTTGACAGAAGGCTCTACCTTCTTCTCTATGGTACCACTATTGGGGCACCTGATAAGAAACCTGTCTGGCACTTTCCAGAAAAAGTATACGAGACCGAGGAGACACTGCGTAAATGTGCAGAGTCTGCCTTAGCGTCCATCCTTGGAGGTCTTTCTCATACATATTTTGTTGGAAATGCTCCTATGGCGCACATGGTTGTACCGCCTACACAAACTGCACAAGTTTCATCTCTGAGGAGGTTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAATATTGAGAAATGTGAAGATTTTGTGTGGGTTACAAAGGATGAATTGATGGAATATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCAAGTAGATTGATCATATAAGCCTCATAGATTGTTTCAATCAACAAATTCCTGGTGAGTTTGTAAGTGAAATGGAGGATCAAGTTATGAACGGCTAAATTAAGGGCTGAGGCTGGAGGCTGGAGGCTGGAGGCTTTGTTTGTTCTGATATAATCTGGATGAACGAGGAAA

Coding sequence (CDS)

ATGCAAATACATGACTTTTTTTTTTTCTTTTTCTTTTGGCGGTTGTATAACTTGAACTCTGCTGATAACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACGGAAGCTGACAAAACAAATGATAAGAAGTCACTGCAGAGAGCACTTGACAGAAGGCTCTACCTTCTTCTCTATGGTACCACTATTGGGGCACCTGATAAGAAACCTGTCTGGCACTTTCCAGAAAAAGTATACGAGACCGAGGAGACACTGCGTAAATGTGCAGAGTCTGCCTTAGCGTCCATCCTTGGAGGTCTTTCTCATACATATTTTGTTGGAAATGCTCCTATGGCGCACATGGTTGTACCGCCTACACAAACTGCACAAGTTTCATCTCTGAGGAGGTTCTTTTTTAAGTCTCAAGTGATCGCAACCAATAAATTCAATATTGAGAAATGTGAAGATTTTGTGTGGGTTACAAAGGATGAATTGATGGAATATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGA

Protein sequence

MQIHDFFFFFFFWRLYNLNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVWHFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS

Homology

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BLAST of Carg21125 vs. NCBI nr
Match: KAG7027643.1 (39S ribosomal protein L46, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373.2 bits (957), Expect = 1.2e-99
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MQIHDFFFFFFFWRLYNLNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLY 60
           MQIHDFFFFFFFWRLYNLNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLY
Sbjct: 1   MQIHDFFFFFFFWRLYNLNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLY 60

Query: 61  LLLYGTTIGAPDKKPVWHFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMV 120
           LLLYGTTIGAPDKKPVWHFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMV
Sbjct: 61  LLLYGTTIGAPDKKPVWHFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMV 120

Query: 121 VPPTQTAQVSSLRRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 180
           VPPTQTAQVSSLRRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 121 VPPTQTAQVSSLRRFFFKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 180

[Close]

BLAST of Carg21125 vs. NCBI nr
Match: KAG6595682.1 (39S ribosomal protein L46, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 328.9 bits (842), Expect = 2.7e-86
Identity = 159/163 (97.55%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 71  LDKANARGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 130

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 137
           HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF
Sbjct: 131 HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 190

Query: 138 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 191 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 233

[Close]

BLAST of Carg21125 vs. NCBI nr
Match: XP_022925096.1 (39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-84
Identity = 155/163 (95.09%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 83  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 142

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 137
           HFPEKVYETEETLRKCAE ALASILGGLSHTYFVGNAPMAHMVVPPT+TAQVSSLRRFFF
Sbjct: 143 HFPEKVYETEETLRKCAECALASILGGLSHTYFVGNAPMAHMVVPPTETAQVSSLRRFFF 202

Query: 138 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           K QVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 203 KCQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 245

[Close]

BLAST of Carg21125 vs. NCBI nr
Match: XP_022925099.1 (39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita moschata] >XP_022925100.1 39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita moschata] >XP_022925101.1 39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-84
Identity = 155/163 (95.09%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 67  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 126

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 137
           HFPEKVYETEETLRKCAE ALASILGGLSHTYFVGNAPMAHMVVPPT+TAQVSSLRRFFF
Sbjct: 127 HFPEKVYETEETLRKCAECALASILGGLSHTYFVGNAPMAHMVVPPTETAQVSSLRRFFF 186

Query: 138 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           K QVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 187 KCQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 229

[Close]

BLAST of Carg21125 vs. NCBI nr
Match: XP_022925098.1 (39S ribosomal protein L46, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-84
Identity = 155/163 (95.09%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 76  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 135

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 137
           HFPEKVYETEETLRKCAE ALASILGGLSHTYFVGNAPMAHMVVPPT+TAQVSSLRRFFF
Sbjct: 136 HFPEKVYETEETLRKCAECALASILGGLSHTYFVGNAPMAHMVVPPTETAQVSSLRRFFF 195

Query: 138 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           K QVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 196 KCQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 238

[Close]

BLAST of Carg21125 vs. ExPASy Swiss-Prot
Match: P36528 (54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL17 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 55/164 (33.54%), Postives = 82/164 (50.00%), Query Frame = 0


Query: 19  NSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVWH 78
           N+   + K D     +P  RITEAD++ND KSL+R L R LYLL+        DK   W 
Sbjct: 126 NNQKEQSKDDVNRPVIPNDRITEADRSNDMKSLERQLSRTLYLLV-------KDKSGTWK 185

Query: 79  FPE-KVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 138
           FP   + +  + L   AE+ L  + G   +T+ V   P+  +     +TA+      F  
Sbjct: 186 FPNFDLSDESKPLHVHAENELKLLSGDQIYTWSVSATPIGVLQDERNRTAE------FIV 245

Query: 139 KSQVIATNKFNI-----EKCEDFVWVTKDELMEYFPDQAEFFKK 177
           KS ++A  KF++     +  EDF W+TK E+ EY P   ++F K
Sbjct: 246 KSHILA-GKFDLVASKNDAFEDFAWLTKGEISEYVP--KDYFNK 273

[Close]

BLAST of Carg21125 vs. ExPASy Swiss-Prot
Match: Q9EQI8 (39S ribosomal protein L46, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl46 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 31  IDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVWHFPEKVYETEETL 90
           + + P  R TEADK ND+ SL R LDR L +LL    +G  D   VW  P+  ++  ETL
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNL-VLLVREKLGDQD---VWMLPQVEWQPGETL 186

Query: 91  RKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSS---LRRFFFKSQVIATNKF 150
           R  AE  LA++        F+GNAP  H      +  Q  S   ++ FFFK+ ++  +  
Sbjct: 187 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLTGDFV 246

Query: 151 NIEKCEDFVWVTKDELMEY 167
              K    VW +K+EL +Y
Sbjct: 247 QAGKKSRHVWASKEELGDY 261

[Close]

BLAST of Carg21125 vs. ExPASy Swiss-Prot
Match: Q9H2W6 (39S ribosomal protein L46, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL46 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 38  RITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVWHFPEKVYETEETLRKCAESA 97
           RITEAD+ ND+ SL R LDR L +LL     G  D   VW  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQAEWQPGETLRGTAERT 195

Query: 98  LASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSS---LRRFFFKSQVIATNKFNIEKCED 157
           LA++        F+GNAP  H      Q  +  S    + FFFK+ ++  +         
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 158 FVWVTKDELMEY 167
            VWVTKDEL +Y
Sbjct: 256 HVWVTKDELGDY 263

[Close]

BLAST of Carg21125 vs. ExPASy Swiss-Prot
Match: Q5RBU2 (39S ribosomal protein L46, mitochondrial OS=Pongo abelii OX=9601 GN=MRPL46 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 38  RITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVWHFPEKVYETEETLRKCAESA 97
           RITEAD+ ND+ SL R LDR L +LL     G  D   VW  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQTEWQPGETLRGTAERT 195

Query: 98  LASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSS---LRRFFFKSQVIATNKFNIEKCED 157
           LA++        F+GNAP  H      Q  +  S    + FFFK+ ++  +         
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 158 FVWVTKDELMEY 167
            VWVTKDEL +Y
Sbjct: 256 HVWVTKDELGDY 263

[Close]

BLAST of Carg21125 vs. ExPASy Swiss-Prot
Match: Q3SZ22 (39S ribosomal protein L46, mitochondrial OS=Bos taurus OX=9913 GN=MRPL46 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 51/140 (36.43%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 31  IDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVWHFPEKVYETEETL 90
           + + P  RIT+AD  ND+ SL R LDR L +LL    +G  D   VW  P+  ++  ETL
Sbjct: 127 LQFKPGARITDADVKNDRSSLHRKLDRNL-ILLVKDKLGDQD---VWMLPQAEWQPGETL 186

Query: 91  RKCAESALASILGGLSHTYFVGNAPMAH--MVVPPTQTAQVSSLRRFFFKSQVIATNKFN 150
           R+ AE  LA++        F+GNAP  H     P    A+ S   + FF   ++ T  F+
Sbjct: 187 RQTAERTLATLSENNLEAKFLGNAPCGHYKFKFPQAVRAEGSLGAKIFFFKALLLTGDFS 246

Query: 151 --IEKCEDFVWVTKDELMEY 167
             +EK    VW +K+EL +Y
Sbjct: 247 PAVEKGR-HVWASKEELGDY 261

[Close]

BLAST of Carg21125 vs. ExPASy TrEMBL
Match: A0A6J1EB49 (39S ribosomal protein L46, mitochondrial-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111432442 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.2e-85
Identity = 155/163 (95.09%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 67  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 126

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 137
           HFPEKVYETEETLRKCAE ALASILGGLSHTYFVGNAPMAHMVVPPT+TAQVSSLRRFFF
Sbjct: 127 HFPEKVYETEETLRKCAECALASILGGLSHTYFVGNAPMAHMVVPPTETAQVSSLRRFFF 186

Query: 138 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           K QVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 187 KCQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 229

[Close]

BLAST of Carg21125 vs. ExPASy TrEMBL
Match: A0A6J1EEA2 (39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432442 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.2e-85
Identity = 155/163 (95.09%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 76  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 135

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 137
           HFPEKVYETEETLRKCAE ALASILGGLSHTYFVGNAPMAHMVVPPT+TAQVSSLRRFFF
Sbjct: 136 HFPEKVYETEETLRKCAECALASILGGLSHTYFVGNAPMAHMVVPPTETAQVSSLRRFFF 195

Query: 138 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           K QVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 196 KCQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 238

[Close]

BLAST of Carg21125 vs. ExPASy TrEMBL
Match: A0A6J1EB89 (39S ribosomal protein L46, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432442 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.2e-85
Identity = 155/163 (95.09%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 83  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 142

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQTAQVSSLRRFFF 137
           HFPEKVYETEETLRKCAE ALASILGGLSHTYFVGNAPMAHMVVPPT+TAQVSSLRRFFF
Sbjct: 143 HFPEKVYETEETLRKCAECALASILGGLSHTYFVGNAPMAHMVVPPTETAQVSSLRRFFF 202

Query: 138 KSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           K QVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 203 KCQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 245

[Close]

BLAST of Carg21125 vs. ExPASy TrEMBL
Match: A0A6J1HRN8 (39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466099 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.8e-84
Identity = 156/164 (95.12%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 67  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 126

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQ-TAQVSSLRRFF 137
           HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPT  TAQVSSL+RFF
Sbjct: 127 HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTTGTAQVSSLKRFF 186

Query: 138 FKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           FKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 187 FKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 230

[Close]

BLAST of Carg21125 vs. ExPASy TrEMBL
Match: A0A6J1HPC7 (39S ribosomal protein L46, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466099 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.8e-84
Identity = 156/164 (95.12%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A+ RGKGDYQIDYVPAPRITEADKTND+KSLQRALDRRLYLLLYGTTIGAPDKKPVW
Sbjct: 76  LDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRALDRRLYLLLYGTTIGAPDKKPVW 135

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQ-TAQVSSLRRFF 137
           HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPT  TAQVSSL+RFF
Sbjct: 136 HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTTGTAQVSSLKRFF 195

Query: 138 FKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           FKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS
Sbjct: 196 FKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 239

[Close]

BLAST of Carg21125 vs. TAIR 10
Match: AT1G14620.1 (decoy )

HSP 1 Score: 245.0 bits (624), Expect = 4.7e-65
Identity = 112/164 (68.29%), Postives = 136/164 (82.93%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A NR KG+YQ+DYVPAPRITEADK ND+KSL RALD++LYLL++G   GA   KPVW
Sbjct: 70  LDIAKNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVW 129

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPT-QTAQVSSLRRFF 137
           HFPEKVY++E TLRKCAESAL S++G L+HTYFVGNAPMAHM + PT +   + S +RFF
Sbjct: 130 HFPEKVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFF 189

Query: 138 FKSQVIATNKFNIEKCEDFVWVTKDELMEYFPDQAEFFKKMIIS 181
           FK  V+A +K++I  CEDFVWVTKDEL+E+FP+QAEFF KMIIS
Sbjct: 190 FKCSVVAASKYDISNCEDFVWVTKDELLEFFPEQAEFFNKMIIS 233

[Close]

BLAST of Carg21125 vs. TAIR 10
Match: AT1G14620.2 (decoy )

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-43
Identity = 77/108 (71.30%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 18  LNSADNRGKGDYQIDYVPAPRITEADKTNDKKSLQRALDRRLYLLLYGTTIGAPDKKPVW 77
           L+ A NR KG+YQ+DYVPAPRITEADK ND+KSL RALD++LYLL++G   GA   KPVW
Sbjct: 70  LDIAKNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVW 129

Query: 78  HFPEKVYETEETLRKCAESALASILGGLSHTYFVGNAPMAHMVVPPTQ 126
           HFPEKVY++E TLRKCAESAL S++G L+HTYFVGNAPMAHM + PT+
Sbjct: 130 HFPEKVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTE 177

The following BLAST results are available for this feature:

BLAST of Carg21125 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027643.1	1.2e-99	100.00	39S ribosomal protein L46, mitochondrial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6595682.1	2.7e-86	97.55	39S ribosomal protein L46, mitochondrial, partial [Cucurbita argyrosperma subsp....	[more]
XP_022925096.1	1.9e-84	95.09	39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita moschata]	[more]
XP_022925099.1	1.9e-84	95.09	39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita moschata] >X...	[more]
XP_022925098.1	1.9e-84	95.09	39S ribosomal protein L46, mitochondrial-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg21125 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36528	2.2e-14	33.54	54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9EQI8	1.1e-13	35.97	39S ribosomal protein L46, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl46 PE=1...	[more]
Q9H2W6	1.8e-13	38.64	39S ribosomal protein L46, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL46 PE=1 ...	[more]
Q5RBU2	1.8e-13	38.64	39S ribosomal protein L46, mitochondrial OS=Pongo abelii OX=9601 GN=MRPL46 PE=2 ...	[more]
Q3SZ22	2.4e-13	36.43	39S ribosomal protein L46, mitochondrial OS=Bos taurus OX=9913 GN=MRPL46 PE=2 SV...	[more]

BLAST of Carg21125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EB49	9.2e-85	95.09	39S ribosomal protein L46, mitochondrial-like isoform X3 OS=Cucurbita moschata O...	[more]
A0A6J1EEA2	9.2e-85	95.09	39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita moschata O...	[more]
A0A6J1EB89	9.2e-85	95.09	39S ribosomal protein L46, mitochondrial-like isoform X1 OS=Cucurbita moschata O...	[more]
A0A6J1HRN8	7.8e-84	95.12	39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1HPC7	7.8e-84	95.12	39S ribosomal protein L46, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=...	[more]

BLAST of Carg21125 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14620.1	4.7e-65	68.29	decoy	[more]
AT1G14620.2	1.0e-43	71.30	decoy	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 47..180 e-value: 2.1E-31 score: 110.4
None	No IPR available	PANTHER	PTHR13124:SF14	SUBFAMILY NOT NAMED	coord: 18..180
IPR040008	39S ribosomal protein L46, mitochondrial	PANTHER	PTHR13124	39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED	coord: 18..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21125-RA	Carg21125-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome