Carg21114 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21114
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box domain-containing protein
Location	Carg_Chr07: 8092103 .. 8093147 (-)
RNA-Seq Expression	Carg21114
Synteny	Carg21114

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAATCTCTTCAACCTCCTCCATCCCCGCCGCCGTGGGAGGTGCTGCTTCTCGTCGCCGAACGCCTCGACCCCAGAACACTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCAACAATCTCTGGGAGCCAATTTTTAGTGCCAAATTCCCTTCTCTCACTAACCTCGCCGCCTCCTCCGCCACCACGTCACCTCCCGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGCCCCGCTCCCTCAAAACCCATCCTCTCCCTCTCCGACCTCGTCTTCGTCATCAGCGTCTCCGGCACCGACAAAGCTAACGGTTGTATTGTCAGTGGCGGAACCAAGAAGGAAGAAAAGGGTAATAATTTCTCTTAACTTAAATTTTGAATTATTAAGTATGAGAAATAGAGGTCGGGATGAAAGTCTAATTTTCATTGATGTTCGTTTAAATGGAATGGAATCTAAAGCTAAATTTATGTTTTAAATCAAATTTGGCCGTTTATAAAACCAAATGGTGTATCGAAATCAACCCTTATGAAATTTTGTAGATGTGCCCGAACCCATGTTCACCGTCGTGAAGCACGGCAGCGAGCTAGCGGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATGTCAGCAACAGCGACGAGGTGGTGGTGATCGGAGCTGGAGAGGAGGTGGAGGTGGTGTGGAACGTGGTGCTGGAAGGATGGAGGGCGGTGTTCACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCGCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGCCCGAAGGAGGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGGTGTGTAAAAATGGGGAGGGTGGAAAGAATGATAAGGTTAGGATTGAAAGCGTGAGTGTGGGAATGATGAGTGTACTGAGTTGGAGATATGTGAGTTTGGACGATGGGTTGATGTATTTGCAGCATTTTTTGTTCAATCCTTGGAAGAATTAG

mRNA sequence

ATGGCGCAATCTCTTCAACCTCCTCCATCCCCGCCGCCGTGGGAGGTGCTGCTTCTCGTCGCCGAACGCCTCGACCCCAGAACACTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCAACAATCTCTGGGAGCCAATTTTTAGTGCCAAATTCCCTTCTCTCACTAACCTCGCCGCCTCCTCCGCCACCACGTCACCTCCCGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGCCCCGCTCCCTCAAAACCCATCCTCTCCCTCTCCGACCTCGTCTTCGTCATCAGCGTCTCCGGCACCGACAAAGCTAACGATGTGCCCGAACCCATGTTCACCGTCGTGAAGCACGGCAGCGAGCTAGCGGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATGTCAGCAACAGCGACGAGGTGGTGGTGATCGGAGCTGGAGAGGAGGTGGAGGTGGTGTGGAACGTGGTGCTGGAAGGATGGAGGGCGGTGTTCACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCGCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGCCCGAAGGAGGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGGTGTGTAAAAATGGGGAGGGTGGAAAGAATGATAAGGTTAGGATTGAAAGCGTGAGTGTGGGAATGATGAGTGTACTGAGTTGGAGATATGTGAGTTTGGACGATGGGTTGATGTATTTGCAGCATTTTTTGTTCAATCCTTGGAAGAATTAG

Coding sequence (CDS)

ATGGCGCAATCTCTTCAACCTCCTCCATCCCCGCCGCCGTGGGAGGTGCTGCTTCTCGTCGCCGAACGCCTCGACCCCAGAACACTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCAACAATCTCTGGGAGCCAATTTTTAGTGCCAAATTCCCTTCTCTCACTAACCTCGCCGCCTCCTCCGCCACCACGTCACCTCCCGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGCCCCGCTCCCTCAAAACCCATCCTCTCCCTCTCCGACCTCGTCTTCGTCATCAGCGTCTCCGGCACCGACAAAGCTAACGATGTGCCCGAACCCATGTTCACCGTCGTGAAGCACGGCAGCGAGCTAGCGGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATGTCAGCAACAGCGACGAGGTGGTGGTGATCGGAGCTGGAGAGGAGGTGGAGGTGGTGTGGAACGTGGTGCTGGAAGGATGGAGGGCGGTGTTCACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCGCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGCCCGAAGGAGGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGGTGTGTAAAAATGGGGAGGGTGGAAAGAATGATAAGGTTAGGATTGAAAGCGTGAGTGTGGGAATGATGAGTGTACTGAGTTGGAGATATGTGAGTTTGGACGATGGGTTGATGTATTTGCAGCATTTTTTGTTCAATCCTTGGAAGAATTAG

Protein sequence

MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANDVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPWKN

Homology

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BLAST of Carg21114 vs. NCBI nr
Match: KAG7027654.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 548.1 bits (1411), Expect = 4.2e-152
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANDVP 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANDVP
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANDVP 120

Query: 121 EPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWNVVLEGWRAVFTMI 180
           EPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWNVVLEGWRAVFTMI
Sbjct: 121 EPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWNVVLEGWRAVFTMI 180

Query: 181 ECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRIESVS 240
           ECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRIESVS
Sbjct: 181 ECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRIESVS 240

Query: 241 VGMMSVLSWRYVSLDDGLMYLQHFLFNPWKN 272
           VGMMSVLSWRYVSLDDGLMYLQHFLFNPWKN
Sbjct: 241 VGMMSVLSWRYVSLDDGLMYLQHFLFNPWKN 271

[Close]

BLAST of Carg21114 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 525.0 bits (1351), Expect = 3.8e-145
Identity = 265/284 (93.31%), Postives = 267/284 (94.01%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN--- 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPIL LSDLVFVISVS TDKA+   
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120

Query: 121 ----------DVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180
                     DVPEPMFTVVKHG ELAVDRNGLFKFDINVSNSDEVVVIGAGEEV VVWN
Sbjct: 121 VGAGAKKEEKDVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPWKN 272
           GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP+KN
Sbjct: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPYKN 284

[Close]

BLAST of Carg21114 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 524.2 bits (1349), Expect = 6.5e-145
Identity = 265/281 (94.31%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN--- 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN   
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGCI 120

Query: 121 ----------DVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180
                     DVPEPMFTVVKHG ELAVDRN LFKFDINVSN DEVVVIGAGEEVEVVWN
Sbjct: 121 VSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKFDINVSNGDEVVVIGAGEEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 269
           GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Carg21114 vs. NCBI nr
Match: XP_022966422.1 (probable F-box protein At5g04010 [Cucurbita maxima])

HSP 1 Score: 503.1 bits (1294), Expect = 1.5e-138
Identity = 253/281 (90.04%), Postives = 259/281 (92.17%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASN+LWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN--- 120
           TNLAASSAT SPP+SF RLFGLGHTAAARRRPAPSKPILSLSDL+FVISVSGTDKA+   
Sbjct: 61  TNLAASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKADGCI 120

Query: 121 ----------DVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180
                     DVPE MFT+VKHG EL VDRNGLFKFDINVS  DE VVIGAG EVEVVWN
Sbjct: 121 VGGGATKEEKDVPELMFTIVKHGGELVVDRNGLFKFDINVSKGDEAVVIGAGGEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 269
           GGKND+VRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Carg21114 vs. NCBI nr
Match: KAG6595690.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 454.1 bits (1167), Expect = 8.2e-124
Identity = 230/246 (93.50%), Postives = 231/246 (93.90%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASN+LWE IFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWETIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN--- 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN   
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGCI 120

Query: 121 ----------DVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180
                     DVPEPMFTVVKHG ELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN
Sbjct: 121 VSGGTKKEEKDVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 234
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

[Close]

BLAST of Carg21114 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.7e-24
Identity = 82/259 (31.66%), Postives = 127/259 (49.03%), Query Frame = 0


Query: 9   PSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSA 68
           PSPP WE+L LV   +DP +LA ASCV  +WS   +S +LW+ + + +            
Sbjct: 50  PSPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEG 109

Query: 69  TTSPPVSFRRLFGLGHTAAARRR-PAPSKPILSLSDLVFVISVSGTDKANDVPEPMFTVV 128
                +S++RL     +AA RRR   P++P +SLSDLVF++ VS   K          VV
Sbjct: 110 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE-------AVVV 169

Query: 129 KHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWNVVLEGWRAVFTMIECGGRVG 188
           K G +L    N  F+ + +V +S     +   ++V + WNVVL  +  +F M E    + 
Sbjct: 170 KQGKDLVFGSNERFQIEADVRDSGFTADM---KDVSMSWNVVLRNYERMFLMSET--VIK 229

Query: 189 MAPRADGWFSEELPAAGCCPKEVSG-GIVADLKLGVCKNGEGGKNDKVRIESVSVGMMSV 248
                 GWF++ELP  G   +   G  +V ++K           N+ V ++ V   +   
Sbjct: 230 SLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF--------NEDV-LDKVVFAIADS 285

Query: 249 LSWRYVSLDDGLMYLQHFL 266
            +W+ + +DD L YLQ FL
Sbjct: 290 RNWKSLFVDDVLRYLQCFL 285

[Close]

BLAST of Carg21114 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 3.1e-145
Identity = 265/281 (94.31%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN--- 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN   
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGCI 120

Query: 121 ----------DVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180
                     DVPEPMFTVVKHG ELAVDRN LFKFDINVSN DEVVVIGAGEEVEVVWN
Sbjct: 121 VSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKFDINVSNGDEVVVIGAGEEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 269
           GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Carg21114 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 7.5e-139
Identity = 253/281 (90.04%), Postives = 259/281 (92.17%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASN+LWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN--- 120
           TNLAASSAT SPP+SF RLFGLGHTAAARRRPAPSKPILSLSDL+FVISVSGTDKA+   
Sbjct: 61  TNLAASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKADGCI 120

Query: 121 ----------DVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180
                     DVPE MFT+VKHG EL VDRNGLFKFDINVS  DE VVIGAG EVEVVWN
Sbjct: 121 VGGGATKEEKDVPELMFTIVKHGGELVVDRNGLFKFDINVSKGDEAVVIGAGGEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 269
           GGKND+VRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Carg21114 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 5.2e-108
Identity = 211/283 (74.56%), Postives = 232/283 (81.98%), Query Frame = 0


Query: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60
           MAQ L     SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANDV 120
           L NL AS+ T+SPPVSFRRLFGLG+ AAARRRPA  KP LSLSDLVFVIS+S TDK   +
Sbjct: 61  LFNL-ASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSI 120

Query: 121 --------------PEPMFTVVKHGSELAVDRNGLFKFDINVS-NSDEVVVIGAGEEVEV 180
                         P+   TVVKHG EL V+RNGLFKFDIN++ N    VVIGA EEVEV
Sbjct: 121 IACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENGAAPVVIGAREEVEV 180

Query: 181 VWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCK 240
           VWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C 
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLC- 240

Query: 241 NGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 268
            G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 -GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Carg21114 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 5.2e-108
Identity = 211/283 (74.56%), Postives = 232/283 (81.98%), Query Frame = 0


Query: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60
           MAQ L     SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANDV 120
           L NL AS+ T+SPPVSFRRLFGLG+ AAARRRPA  KP LSLSDLVFVIS+S TDK   +
Sbjct: 61  LFNL-ASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSI 120

Query: 121 --------------PEPMFTVVKHGSELAVDRNGLFKFDINVS-NSDEVVVIGAGEEVEV 180
                         P+   TVVKHG EL V+RNGLFKFDIN++ N    VVIGA EEVEV
Sbjct: 121 IACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENGAAPVVIGAREEVEV 180

Query: 181 VWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCK 240
           VWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C 
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLC- 240

Query: 241 NGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 268
            G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 -GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Carg21114 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.7e-106
Identity = 210/284 (73.94%), Postives = 231/284 (81.34%), Query Frame = 0


Query: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60
           MAQ L     SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVS-------- 120
           L NLA + A TSP VSFRRLFGLG+ AAARRRPA SKP LSLSDLVFVIS+S        
Sbjct: 61  LFNLATAPA-TSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCS 120

Query: 121 ----GTDKANDVPEPM--FTVVKHGSELAVDRNGLFKFDINVSNSDE--VVVIGAGEEVE 180
               G +K    P P    T+VKHG EL VDRNGLFKFDIN++ + +   VVIGA EEVE
Sbjct: 121 IACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVE 180

Query: 181 VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVC 240
           VVWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C
Sbjct: 181 VVWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC 240

Query: 241 KNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 268
             G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 --GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 281

[Close]

BLAST of Carg21114 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-25
Identity = 82/259 (31.66%), Postives = 127/259 (49.03%), Query Frame = 0


Query: 9   PSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSA 68
           PSPP WE+L LV   +DP +LA ASCV  +WS   +S +LW+ + + +            
Sbjct: 50  PSPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEG 109

Query: 69  TTSPPVSFRRLFGLGHTAAARRR-PAPSKPILSLSDLVFVISVSGTDKANDVPEPMFTVV 128
                +S++RL     +AA RRR   P++P +SLSDLVF++ VS   K          VV
Sbjct: 110 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE-------AVVV 169

Query: 129 KHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWNVVLEGWRAVFTMIECGGRVG 188
           K G +L    N  F+ + +V +S     +   ++V + WNVVL  +  +F M E    + 
Sbjct: 170 KQGKDLVFGSNERFQIEADVRDSGFTADM---KDVSMSWNVVLRNYERMFLMSET--VIK 229

Query: 189 MAPRADGWFSEELPAAGCCPKEVSG-GIVADLKLGVCKNGEGGKNDKVRIESVSVGMMSV 248
                 GWF++ELP  G   +   G  +V ++K           N+ V ++ V   +   
Sbjct: 230 SLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF--------NEDV-LDKVVFAIADS 285

Query: 249 LSWRYVSLDDGLMYLQHFL 266
            +W+ + +DD L YLQ FL
Sbjct: 290 RNWKSLFVDDVLRYLQCFL 285

The following BLAST results are available for this feature:

BLAST of Carg21114 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027654.1	4.2e-152	100.00	putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023518459.1	3.8e-145	93.31	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]
XP_022925168.1	6.5e-145	94.31	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
XP_022966422.1	1.5e-138	90.04	probable F-box protein At5g04010 [Cucurbita maxima]	[more]
KAG6595690.1	8.2e-124	93.50	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg21114 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	7.7e-24	31.66	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of Carg21114 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEG3	3.1e-145	94.31	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A6J1HMX9	7.5e-139	90.04	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]
A0A5D3DEJ6	5.2e-108	74.56	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	5.2e-108	74.56	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A0A0LDE5	1.7e-106	73.94	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]

BLAST of Carg21114 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	5.5e-25	31.66	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 13..52 e-value: 1.2E-5 score: 25.0
None	No IPR available	GENE3D	1.20.1280.50		coord: 10..90 e-value: 9.2E-8 score: 33.9
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 6..254
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 6..254
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 13..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21114-RA	Carg21114-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding