Carg20930 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20930
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSynechocystis YCF37
LocationCarg_Chr20: 11381888 .. 11382382 (-)
RNA-Seq ExpressionCarg20930
SyntenyCarg20930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGGGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

mRNA sequence

ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGGGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

Coding sequence (CDS)

ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGGGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

Protein sequence

MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Homology
BLAST of Carg20930 vs. NCBI nr
Match: KAG6571416.1 (hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011180.1 hypothetical protein SDJN02_27978, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPS 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPS
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPS 60

Query: 61  MAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETA 120
           MAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETA
Sbjct: 61  MAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETA 120

Query: 121 EKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
           EKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 EKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 164

BLAST of Carg20930 vs. NCBI nr
Match: XP_022928047.1 (uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 uncharacterized protein LOC111776892 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL  TAT AVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166

BLAST of Carg20930 vs. NCBI nr
Match: XP_022971729.1 (uncharacterized protein LOC111470397 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 6.8e-73
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL  TAT AVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165

BLAST of Carg20930 vs. NCBI nr
Match: XP_008457854.1 (PREDICTED: uncharacterized protein LOC103497439 [Cucumis melo] >KAA0045850.1 Synechocystis YCF37 [Cucumis melo var. makuwa] >TYK13738.1 Synechocystis YCF37 [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 148/164 (90.24%), Postives = 155/164 (94.51%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENP 60
           MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTAT AVVGRENP
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATAAVVGRENP 60

Query: 61  SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIET 120
           SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER IET
Sbjct: 61  SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREIET 120

Query: 121 AEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
           AEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 AEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164

BLAST of Carg20930 vs. NCBI nr
Match: XP_038900735.1 (uncharacterized protein LOC120087852 [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 8.9e-65
Identity = 148/167 (88.62%), Postives = 154/167 (92.22%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTAT---GAVVGR 60
           MAST ISP+LQIL  RCRLNITVRAA+VK  PESLSA RTRRQTLL LTAT    AVVGR
Sbjct: 1   MASTAISPVLQILPSRCRLNITVRAAAVKSLPESLSARRTRRQTLLFLTATAAAAAVVGR 60

Query: 61  ENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERG 120
           ENPS+AEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAE+GI+ AERG
Sbjct: 61  ENPSVAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEQGIVAAERG 120

Query: 121 IETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
           IETAEKEIE+AVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 IETAEKEIETAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167

BLAST of Carg20930 vs. ExPASy TrEMBL
Match: A0A6J1EIT8 (uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC111434949 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.0e-75
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL  TAT AVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166

BLAST of Carg20930 vs. ExPASy TrEMBL
Match: A0A6J1I9D9 (uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.3e-73
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL  TAT AVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165

BLAST of Carg20930 vs. ExPASy TrEMBL
Match: A0A5D3CRC5 (Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002670 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.9e-67
Identity = 148/164 (90.24%), Postives = 155/164 (94.51%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENP 60
           MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTAT AVVGRENP
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATAAVVGRENP 60

Query: 61  SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIET 120
           SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER IET
Sbjct: 61  SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREIET 120

Query: 121 AEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
           AEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 AEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164

BLAST of Carg20930 vs. ExPASy TrEMBL
Match: A0A1S3C6G5 (uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.9e-67
Identity = 148/164 (90.24%), Postives = 155/164 (94.51%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENP 60
           MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTAT AVVGRENP
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATAAVVGRENP 60

Query: 61  SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIET 120
           SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER IET
Sbjct: 61  SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREIET 120

Query: 121 AEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
           AEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 AEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164

BLAST of Carg20930 vs. ExPASy TrEMBL
Match: A0A0A0LJU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 148/166 (89.16%), Postives = 154/166 (92.77%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VK P ESLSA+RTRRQTLL L  TAT AVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKSPSESLSASRTRRQTLLFLTATATAAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
           ETAEKEIE+AVNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 166

BLAST of Carg20930 vs. TAIR 10
Match: AT2G23670.1 (homolog of Synechocystis YCF37 )

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-36
Identity = 100/173 (57.80%), Postives = 118/173 (68.21%), Query Frame = 0

Query: 1   MASTISPIL-----QILQPRC--RLNITVRAA-SVKPPPESLS-AARTRRQTLLILTATG 60
           MAST+S  L       LQ RC    +++ RAA S KP   S S    +RR  L  LTA  
Sbjct: 1   MASTVSLSLLSGGSGALQARCARTAHVSPRAAHSNKPALSSFSLTGASRRNLLFSLTAAT 60

Query: 61  AVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII 120
            V G +  SMAE+IPLFG+RKKLKK EEEA EIV+EGFE AEKG++        AEKG+ 
Sbjct: 61  VVTGLQPASMAENIPLFGIRKKLKKAEEEAVEIVKEGFETAEKGVD-------AAEKGLE 120

Query: 121 TAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
            AERG+ETAEKEI +AV+F  L+QAGAV  AE VGVLVATS+VNGILGPEAQ+
Sbjct: 121 AAERGVETAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQK 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571416.17.8e-77100.00hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022928047.11.2e-7498.19uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 unchar... [more]
XP_022971729.16.8e-7396.97uncharacterized protein LOC111470397 [Cucurbita maxima][more]
XP_008457854.11.6e-6690.24PREDICTED: uncharacterized protein LOC103497439 [Cucumis melo] >KAA0045850.1 Syn... [more]
XP_038900735.18.9e-6588.62uncharacterized protein LOC120087852 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EIT86.0e-7598.19uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1I9D93.3e-7396.97uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397... [more]
A0A5D3CRC57.9e-6790.24Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G... [more]
A0A1S3C6G57.9e-6790.24uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=... [more]
A0A0A0LJU75.7e-6589.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G23670.13.2e-3657.80homolog of Synechocystis YCF37 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..87
NoneNo IPR availablePANTHERPTHR36734YCF37-LIKE PROTEINcoord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20930-RACarg20930-RAmRNA