Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGGGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA
mRNA sequence
ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGGGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA
Coding sequence (CDS)
ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGGGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA
Protein sequence
MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Homology
BLAST of Carg20930 vs. NCBI nr
Match:
KAG6571416.1 (hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011180.1 hypothetical protein SDJN02_27978, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPS 60
MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPS
Sbjct: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENPS 60
Query: 61 MAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETA 120
MAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETA
Sbjct: 61 MAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETA 120
Query: 121 EKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
EKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 EKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 164
BLAST of Carg20930 vs. NCBI nr
Match:
XP_022928047.1 (uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 uncharacterized protein LOC111776892 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0
Query: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL TAT AVVGREN
Sbjct: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
Query: 61 PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61 PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166
BLAST of Carg20930 vs. NCBI nr
Match:
XP_022971729.1 (uncharacterized protein LOC111470397 [Cucurbita maxima])
HSP 1 Score: 284.3 bits (726), Expect = 6.8e-73
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL TAT AVVGREN
Sbjct: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
Query: 61 PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61 PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165
BLAST of Carg20930 vs. NCBI nr
Match:
XP_008457854.1 (PREDICTED: uncharacterized protein LOC103497439 [Cucumis melo] >KAA0045850.1 Synechocystis YCF37 [Cucumis melo var. makuwa] >TYK13738.1 Synechocystis YCF37 [Cucumis melo var. makuwa])
HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 148/164 (90.24%), Postives = 155/164 (94.51%), Query Frame = 0
Query: 1 MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENP 60
MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTAT AVVGRENP
Sbjct: 1 MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATAAVVGRENP 60
Query: 61 SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIET 120
SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER IET
Sbjct: 61 SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREIET 120
Query: 121 AEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
AEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 AEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164
BLAST of Carg20930 vs. NCBI nr
Match:
XP_038900735.1 (uncharacterized protein LOC120087852 [Benincasa hispida])
HSP 1 Score: 257.3 bits (656), Expect = 8.9e-65
Identity = 148/167 (88.62%), Postives = 154/167 (92.22%), Query Frame = 0
Query: 1 MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTAT---GAVVGR 60
MAST ISP+LQIL RCRLNITVRAA+VK PESLSA RTRRQTLL LTAT AVVGR
Sbjct: 1 MASTAISPVLQILPSRCRLNITVRAAAVKSLPESLSARRTRRQTLLFLTATAAAAAVVGR 60
Query: 61 ENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERG 120
ENPS+AEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAE+GI+ AERG
Sbjct: 61 ENPSVAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEQGIVAAERG 120
Query: 121 IETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
IETAEKEIE+AVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 IETAEKEIETAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167
BLAST of Carg20930 vs. ExPASy TrEMBL
Match:
A0A6J1EIT8 (uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC111434949 PE=4 SV=1)
HSP 1 Score: 290.0 bits (741), Expect = 6.0e-75
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0
Query: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL TAT AVVGREN
Sbjct: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
Query: 61 PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61 PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166
BLAST of Carg20930 vs. ExPASy TrEMBL
Match:
A0A6J1I9D9 (uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397 PE=4 SV=1)
HSP 1 Score: 284.3 bits (726), Expect = 3.3e-73
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60
MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL TAT AVVGREN
Sbjct: 1 MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
Query: 61 PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61 PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165
BLAST of Carg20930 vs. ExPASy TrEMBL
Match:
A0A5D3CRC5 (Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002670 PE=4 SV=1)
HSP 1 Score: 263.1 bits (671), Expect = 7.9e-67
Identity = 148/164 (90.24%), Postives = 155/164 (94.51%), Query Frame = 0
Query: 1 MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENP 60
MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTAT AVVGRENP
Sbjct: 1 MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATAAVVGRENP 60
Query: 61 SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIET 120
SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER IET
Sbjct: 61 SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREIET 120
Query: 121 AEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
AEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 AEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164
BLAST of Carg20930 vs. ExPASy TrEMBL
Match:
A0A1S3C6G5 (uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=4 SV=1)
HSP 1 Score: 263.1 bits (671), Expect = 7.9e-67
Identity = 148/164 (90.24%), Postives = 155/164 (94.51%), Query Frame = 0
Query: 1 MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATGAVVGRENP 60
MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTAT AVVGRENP
Sbjct: 1 MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATAAVVGRENP 60
Query: 61 SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIET 120
SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER IET
Sbjct: 61 SMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREIET 120
Query: 121 AEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
AEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 AEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164
BLAST of Carg20930 vs. ExPASy TrEMBL
Match:
A0A0A0LJU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1)
HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 148/166 (89.16%), Postives = 154/166 (92.77%), Query Frame = 0
Query: 1 MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGRE 60
MAST ISP LQIL+PRCRL+ TVRAA+VK P ESLSA+RTRRQTLL L TAT AVVGRE
Sbjct: 1 MASTAISPALQILRPRCRLSNTVRAAAVKSPSESLSASRTRRQTLLFLTATATAAVVGRE 60
Query: 61 NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61 NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120
Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 164
ETAEKEIE+AVNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 166
BLAST of Carg20930 vs. TAIR 10
Match:
AT2G23670.1 (homolog of Synechocystis YCF37 )
HSP 1 Score: 149.1 bits (375), Expect = 3.2e-36
Identity = 100/173 (57.80%), Postives = 118/173 (68.21%), Query Frame = 0
Query: 1 MASTISPIL-----QILQPRC--RLNITVRAA-SVKPPPESLS-AARTRRQTLLILTATG 60
MAST+S L LQ RC +++ RAA S KP S S +RR L LTA
Sbjct: 1 MASTVSLSLLSGGSGALQARCARTAHVSPRAAHSNKPALSSFSLTGASRRNLLFSLTAAT 60
Query: 61 AVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII 120
V G + SMAE+IPLFG+RKKLKK EEEA EIV+EGFE AEKG++ AEKG+
Sbjct: 61 VVTGLQPASMAENIPLFGIRKKLKKAEEEAVEIVKEGFETAEKGVD-------AAEKGLE 120
Query: 121 TAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 165
AERG+ETAEKEI +AV+F L+QAGAV AE VGVLVATS+VNGILGPEAQ+
Sbjct: 121 AAERGVETAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQK 166
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6571416.1 | 7.8e-77 | 100.00 | hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022928047.1 | 1.2e-74 | 98.19 | uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 unchar... | [more] |
XP_022971729.1 | 6.8e-73 | 96.97 | uncharacterized protein LOC111470397 [Cucurbita maxima] | [more] |
XP_008457854.1 | 1.6e-66 | 90.24 | PREDICTED: uncharacterized protein LOC103497439 [Cucumis melo] >KAA0045850.1 Syn... | [more] |
XP_038900735.1 | 8.9e-65 | 88.62 | uncharacterized protein LOC120087852 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1EIT8 | 6.0e-75 | 98.19 | uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC1114349... | [more] |
A0A6J1I9D9 | 3.3e-73 | 96.97 | uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397... | [more] |
A0A5D3CRC5 | 7.9e-67 | 90.24 | Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G... | [more] |
A0A1S3C6G5 | 7.9e-67 | 90.24 | uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=... | [more] |
A0A0A0LJU7 | 5.7e-65 | 89.16 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G23670.1 | 3.2e-36 | 57.80 | homolog of Synechocystis YCF37 | [more] |