Carg20872 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20872
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NDR1/HIN1-like protein 6 isoform X1
Location	Carg_Chr06: 6852509 .. 6852925 (+)
RNA-Seq Expression	Carg20872
Synteny	Carg20872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGCCGCCATTGAAACCTGTTCTCCAGAAGCCTCCGGGGTATAAAGAACTGAATCTCGCTGCTCAGCCGGTGGTGAGACCGTCGGCGAGGAAACTGATTCTTCCTTCGCCGATGAACCAGAAGAACAAGAAGCGACGGAGCTTCTGCCGTGGATGCTGTTGTTTCCTCTGCTTTTTCCTTCTGGTTCTGATCGTTGTAGCTGTCGCCGCTGGTGGAGTTTTATACCTCTGGTTTGAGCCAAAACTCCCCGTATTTCATCTCCAATTATTCCGAATCTTGAAATTGAACGTCACCGACAAATCGGACGGCTCGTATCTAAACGCGAGAACCCTCGGTCGTATCGAAATCAAGAACCCTAACTCGAAGTTATCACTGAATTACGGCGATATCGAGATCAAAATCGCCGCTTAA

mRNA sequence

ATGACAGAGCCGCCATTGAAACCTGTTCTCCAGAAGCCTCCGGGGTATAAAGAACTGAATCTCGCTGCTCAGCCGGTGGTGAGACCGTCGGCGAGGAAACTGATTCTTCCTTCGCCGATGAACCAGAAGAACAAGAAGCGACGGAGCTTCTGCCGTGGATGCTGTTGTTTCCTCTGCTTTTTCCTTCTGGTTCTGATCGTTGTAGCTGTCGCCGCTGGTGGAGTTTTATACCTCTGGTTTGAGCCAAAACTCCCCGTATTTCATCTCCAATTATTCCGAATCTTGAAATTGAACGTCACCGACAAATCGGACGGCTCGTATCTAAACGCGAGAACCCTCGGTCGTATCGAAATCAAGAACCCTAACTCGAAGTTATCACTGAATTACGGCGATATCGAGATCAAAATCGCCGCTTAA

Coding sequence (CDS)

ATGACAGAGCCGCCATTGAAACCTGTTCTCCAGAAGCCTCCGGGGTATAAAGAACTGAATCTCGCTGCTCAGCCGGTGGTGAGACCGTCGGCGAGGAAACTGATTCTTCCTTCGCCGATGAACCAGAAGAACAAGAAGCGACGGAGCTTCTGCCGTGGATGCTGTTGTTTCCTCTGCTTTTTCCTTCTGGTTCTGATCGTTGTAGCTGTCGCCGCTGGTGGAGTTTTATACCTCTGGTTTGAGCCAAAACTCCCCGTATTTCATCTCCAATTATTCCGAATCTTGAAATTGAACGTCACCGACAAATCGGACGGCTCGTATCTAAACGCGAGAACCCTCGGTCGTATCGAAATCAAGAACCCTAACTCGAAGTTATCACTGAATTACGGCGATATCGAGATCAAAATCGCCGCTTAA

Protein sequence

MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKNPNSKLSLNYGDIEIKIAA

Homology

[Close]

BLAST of Carg20872 vs. NCBI nr
Match: KAG6597106.1 (NDR1/HIN1-like protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF
Sbjct: 62  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 121

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 122 FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 181

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 182 PNSKLSLNYGDIEIKIAA 199

[Close]

BLAST of Carg20872 vs. NCBI nr
Match: XP_022933893.1 (NDR1/HIN1-like protein 6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF
Sbjct: 62  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 121

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 122 FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 181

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 182 PNSKLSLNYGDIEIKIAA 199

[Close]

BLAST of Carg20872 vs. NCBI nr
Match: XP_022933901.1 (NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata] >XP_022933908.1 NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata] >XP_022933915.1 NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF
Sbjct: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 121 PNSKLSLNYGDIEIKIAA 138

[Close]

BLAST of Carg20872 vs. NCBI nr
Match: KAG7028568.1 (hypothetical protein SDJN02_09749, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF
Sbjct: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 121 PNSKLSLNYGDIEIKIAA 138

[Close]

BLAST of Carg20872 vs. NCBI nr
Match: XP_023539044.1 (NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo] >XP_023539045.1 NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF
Sbjct: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLL+LI+VAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 61  FLLILIIVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 121 PNSKLSLNYGDIEIKIAA 138

[Close]

BLAST of Carg20872 vs. ExPASy Swiss-Prot
Match: Q8LD98 (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 45  KKRRSFCRGCCCFLCFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSD 104
           KKRRS C  C C+   FLL+L+V   A+ G+LYL F+PKLP + +   ++ +  +    D
Sbjct: 56  KKRRSCCCRCFCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFAL--NQD 115

Query: 105 GSYLNARTLGRIEIKNPNSKLSLNYGD 132
            S   A  +  I  KNPN K+ + Y D
Sbjct: 116 SSLTTAFNV-TITAKNPNEKIGIYYED 139

[Close]

BLAST of Carg20872 vs. ExPASy TrEMBL
Match: A0A6J1F0B0 (NDR1/HIN1-like protein 6 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441169 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.8e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF
Sbjct: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 121 PNSKLSLNYGDIEIKIAA 138

[Close]

BLAST of Carg20872 vs. ExPASy TrEMBL
Match: A0A6J1F647 (NDR1/HIN1-like protein 6 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441169 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.8e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF
Sbjct: 62  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 121

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 122 FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 181

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 182 PNSKLSLNYGDIEIKIAA 199

[Close]

BLAST of Carg20872 vs. ExPASy TrEMBL
Match: A0A6J1IHC7 (NDR1/HIN1-like protein 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111475523 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.1e-69
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCR CCCFLCF
Sbjct: 54  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRRCCCFLCF 113

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVV VAAGGVLYLWFEPKLPVFHLQLFRI KLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 114 FLLVLIVVVVAAGGVLYLWFEPKLPVFHLQLFRISKLNVTDKSDGSYLNARTLGRIEIKN 173

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 174 PNSKLSLNYGDIEIKIAA 191

[Close]

BLAST of Carg20872 vs. ExPASy TrEMBL
Match: A0A6J1IDN7 (NDR1/HIN1-like protein 6 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111475523 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.1e-69
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCR CCCFLCF
Sbjct: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRRCCCFLCF 60

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVV VAAGGVLYLWFEPKLPVFHLQLFRI KLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 61  FLLVLIVVVVAAGGVLYLWFEPKLPVFHLQLFRISKLNVTDKSDGSYLNARTLGRIEIKN 120

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 121 PNSKLSLNYGDIEIKIAA 138

[Close]

BLAST of Carg20872 vs. ExPASy TrEMBL
Match: A0A6J1IEU7 (NDR1/HIN1-like protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111475523 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.1e-69
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCF 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCR CCCFLCF
Sbjct: 50  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRRCCCFLCF 109

Query: 61  FLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           FLLVLIVV VAAGGVLYLWFEPKLPVFHLQLFRI KLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 110 FLLVLIVVVVAAGGVLYLWFEPKLPVFHLQLFRISKLNVTDKSDGSYLNARTLGRIEIKN 169

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 170 PNSKLSLNYGDIEIKIAA 187

[Close]

BLAST of Carg20872 vs. TAIR 10
Match: AT2G46300.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-25
Identity = 57/142 (40.14%), Postives = 86/142 (60.56%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSAR----KLILPSPMNQK-NKKRRSFCRGCC 60
           M +  + PVLQKPPGY++ N+++ P   P  +    +  +P P + +  KKRRS CR CC
Sbjct: 1   MADYQMNPVLQKPPGYRDPNMSSPPPPPPPIQQQPMRKAVPMPTSYRPKKKRRSCCRFCC 60

Query: 61  CFLCFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGR 120
           C +C  L++ I + +    V YLWF+PKLP F L  FR+    + D  DG+ L+A  + R
Sbjct: 61  CCICITLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVAR 120

Query: 121 IEIKNPNSKLSLNYGDIEIKIA 138
           +E+KNPNSKL   YG+  + ++
Sbjct: 121 VEMKNPNSKLVFYYGNTAVDLS 142

[Close]

BLAST of Carg20872 vs. TAIR 10
Match: AT1G01453.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-21
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 3   EPPLKPVLQKPPGYKELNLAAQPVVRPSARKLI---LPSPMNQKNKKRR-SFCRGCCCFL 62
           E PL+P LQKPPG+++     QP   PS    +    P P++  +KKRR SFCR  CC +
Sbjct: 17  EKPLQPALQKPPGFRDQQ--NQPSAPPSGTATLPRRRPRPIHPADKKRRCSFCRVFCCCV 76

Query: 63  CFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTD-KSDG--SYLNARTLGR 122
           C    V++++ + A  V +LW+ PKLPV  L  F+I   N +D KSD   S+L+A T   
Sbjct: 77  CILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTTSV 136

Query: 123 IEIKNPNSKLSLNYGDIEIKI 137
           ++ +NPN KL+  YGD ++ +
Sbjct: 137 LDFRNPNGKLTFYYGDTDVAV 155

[Close]

BLAST of Carg20872 vs. TAIR 10
Match: AT1G01453.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-21
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 3   EPPLKPVLQKPPGYKELNLAAQPVVRPSARKLI---LPSPMNQKNKKRR-SFCRGCCCFL 62
           E PL+P LQKPPG+++     QP   PS    +    P P++  +KKRR SFCR  CC +
Sbjct: 17  EKPLQPALQKPPGFRDQQ--NQPSAPPSGTATLPRRRPRPIHPADKKRRCSFCRVFCCCV 76

Query: 63  CFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTD-KSDG--SYLNARTLGR 122
           C    V++++ + A  V +LW+ PKLPV  L  F+I   N +D KSD   S+L+A T   
Sbjct: 77  CILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTTSV 136

Query: 123 IEIKNPNSKLSLNYGDIEIKI 137
           ++ +NPN KL+  YGD ++ +
Sbjct: 137 LDFRNPNGKLTFYYGDTDVAV 155

[Close]

BLAST of Carg20872 vs. TAIR 10
Match: AT4G01110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01453.1); Has 273 Blast hits to 272 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 8.1e-17
Identity = 48/147 (32.65%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 3   EPPLKPVLQKPPGYKELNLAAQPVVRPSAR---------KLILPSPMNQKNKKRRSFCRG 62
           E  LKPVLQKPPGY+EL+   Q  +  S+          K  +P+      K++ S CR 
Sbjct: 4   ETLLKPVLQKPPGYRELHSQPQTPLGSSSSSSSMLRRPPKHAIPAAFYPTKKRQWSRCRV 63

Query: 63  CCCFLCFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDG---SYLNA 122
            CC +C  + ++I++ +    V +L++ P+LPV  L  FR+   N +    G   S L A
Sbjct: 64  FCCCVCITVAIVILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQLTA 123

Query: 123 RTLGRIEIKNPNSKLSLNYGDIEIKIA 138
               R++ +NPN KL   YG++++ ++
Sbjct: 124 EATARLDFRNPNGKLRYYYGNVDVAVS 150

[Close]

BLAST of Carg20872 vs. TAIR 10
Match: AT1G65690.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 45  KKRRSFCRGCCCFLCFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSD 104
           KKRRS C  C C+   FLL+L+V   A+ G+LYL F+PKLP + +   ++ +  +    D
Sbjct: 56  KKRRSCCCRCFCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFAL--NQD 115

Query: 105 GSYLNARTLGRIEIKNPNSKLSLNYGD 132
            S   A  +  I  KNPN K+ + Y D
Sbjct: 116 SSLTTAFNV-TITAKNPNEKIGIYYED 139

The following BLAST results are available for this feature:

BLAST of Carg20872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597106.1	1.2e-70	100.00	NDR1/HIN1-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022933893.1	1.2e-70	100.00	NDR1/HIN1-like protein 6 isoform X1 [Cucurbita moschata]	[more]
XP_022933901.1	1.2e-70	100.00	NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata] >XP_022933908.1 NDR1/HI...	[more]
KAG7028568.1	1.2e-70	100.00	hypothetical protein SDJN02_09749, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023539044.1	2.0e-70	98.55	NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo] >XP_023539045.1 NDR1/HIN1-...	[more]

BLAST of Carg20872 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LD98	3.3e-07	39.08	NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1	[more]

BLAST of Carg20872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0B0	5.8e-71	100.00	NDR1/HIN1-like protein 6 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11144116...	[more]
A0A6J1F647	5.8e-71	100.00	NDR1/HIN1-like protein 6 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11144116...	[more]
A0A6J1IHC7	7.1e-69	97.83	NDR1/HIN1-like protein 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111475523 ...	[more]
A0A6J1IDN7	7.1e-69	97.83	NDR1/HIN1-like protein 6 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111475523 ...	[more]
A0A6J1IEU7	7.1e-69	97.83	NDR1/HIN1-like protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111475523 ...	[more]

BLAST of Carg20872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46300.1	2.8e-25	40.14	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G01453.1	3.2e-21	40.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G01453.2	3.2e-21	40.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G01110.1	8.1e-17	32.65	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G65690.1	2.4e-08	39.08	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31234	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 1..138
None	No IPR available	PANTHER	PTHR31234:SF48	SUBFAMILY NOT NAMED	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20872-RA	Carg20872-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane