Carg20857 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20857
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCHD3-type chromatin-remodeling factor PICKLE
LocationCarg_Chr01: 11513919 .. 11514068 (-)
RNA-Seq ExpressionCarg20857
SyntenyCarg20857
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTCAACGCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG

mRNA sequence

AATATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTCAACGCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG

Coding sequence (CDS)

ATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTCAACGCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG

Protein sequence

MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Homology
BLAST of Carg20857 vs. NCBI nr
Match: XP_023524018.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Sbjct: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 49

BLAST of Carg20857 vs. NCBI nr
Match: XP_022981141.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Sbjct: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 49

BLAST of Carg20857 vs. NCBI nr
Match: XP_022940612.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Sbjct: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 49

BLAST of Carg20857 vs. NCBI nr
Match: KAG7037640.1 (hypothetical protein SDJN02_01269, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Sbjct: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 49

BLAST of Carg20857 vs. NCBI nr
Match: KAG6608287.1 (CHD3-type chromatin-remodeling factor PICKLE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Sbjct: 49 MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 97

BLAST of Carg20857 vs. ExPASy Swiss-Prot
Match: Q9S775 (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana OX=3702 GN=PKL PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.2e-05
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLERED 49
          MSSLVERLR+RS+R+PVYNLD+SDDD D+  KK   T ++ E + R D
Sbjct: 1  MSSLVERLRIRSDRKPVYNLDDSDDD-DFVPKK-DRTFEQVEAIVRTD 46

BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A6J1IVQ1 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita maxima OX=3661 GN=LOC111480376 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Sbjct: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 49

BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A6J1FK38 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita moschata OX=3662 GN=LOC111446153 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Sbjct: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 49

BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A6J1C6Q2 (CHD3-type chromatin-remodeling factor PICKLE OS=Momordica charantia OX=3673 GN=LOC111008749 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRP+YNLDESDD+FDYKHKKPGS Q+ FEKL R+DK
Sbjct: 1  MSSLVERLRVRSERRPIYNLDESDDEFDYKHKKPGSLQENFEKLVRDDK 49

BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A5A7VBI4 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESD++FDYK KKPGS Q+ FE+LER+DK
Sbjct: 17 MSSLVERLRVRSERRPVYNLDESDEEFDYKRKKPGSAQEIFERLERDDK 65

BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A1S4DZ79 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo OX=3656 GN=LOC103493764 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK 50
          MSSLVERLRVRSERRPVYNLDESD++FDYK KKPGS Q+ FE+LER+DK
Sbjct: 1  MSSLVERLRVRSERRPVYNLDESDEEFDYKRKKPGSAQEIFERLERDDK 49

BLAST of Carg20857 vs. TAIR 10
Match: AT2G25170.1 (chromatin remodeling factor CHD3 (PICKLE) )

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLERED 49
          MSSLVERLR+RS+R+PVYNLD+SDDD D+  KK   T ++ E + R D
Sbjct: 1  MSSLVERLRIRSDRKPVYNLDDSDDD-DFVPKK-DRTFEQVEAIVRTD 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023524018.13.5e-17100.00CHD3-type chromatin-remodeling factor PICKLE [Cucurbita pepo subsp. pepo][more]
XP_022981141.13.5e-17100.00CHD3-type chromatin-remodeling factor PICKLE [Cucurbita maxima][more]
XP_022940612.13.5e-17100.00CHD3-type chromatin-remodeling factor PICKLE [Cucurbita moschata][more]
KAG7037640.13.5e-17100.00hypothetical protein SDJN02_01269, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608287.13.5e-17100.00CHD3-type chromatin-remodeling factor PICKLE, partial [Cucurbita argyrosperma su... [more]
Match NameE-valueIdentityDescription
Q9S7753.2e-0560.42CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana OX=3702 GN=... [more]
Match NameE-valueIdentityDescription
A0A6J1IVQ11.7e-17100.00CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1FK381.7e-17100.00CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1C6Q25.2e-1485.71CHD3-type chromatin-remodeling factor PICKLE OS=Momordica charantia OX=3673 GN=L... [more]
A0A5A7VBI45.7e-1383.67CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S4DZ795.7e-1383.67CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo OX=3656 GN=LOC10349... [more]
Match NameE-valueIdentityDescription
AT2G25170.12.3e-0660.42chromatin remodeling factor CHD3 (PICKLE) [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20857-RACarg20857-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0005506 iron ion binding