Carg20857 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AATATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTCAACGCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG AATATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTCAACGCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG ATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTCAACGCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK Homology
BLAST of Carg20857 vs. NCBI nr
Match: XP_023524018.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucurbita pepo subsp. pepo]) HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg20857 vs. NCBI nr
Match: XP_022981141.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucurbita maxima]) HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg20857 vs. NCBI nr
Match: XP_022940612.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucurbita moschata]) HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg20857 vs. NCBI nr
Match: KAG7037640.1 (hypothetical protein SDJN02_01269, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg20857 vs. NCBI nr
Match: KAG6608287.1 (CHD3-type chromatin-remodeling factor PICKLE, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg20857 vs. ExPASy Swiss-Prot
Match: Q9S775 (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana OX=3702 GN=PKL PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 3.2e-05 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A6J1IVQ1 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita maxima OX=3661 GN=LOC111480376 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A6J1FK38 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita moschata OX=3662 GN=LOC111446153 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A6J1C6Q2 (CHD3-type chromatin-remodeling factor PICKLE OS=Momordica charantia OX=3673 GN=LOC111008749 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14 Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 0
BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A5A7VBI4 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001110 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13 Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 0
BLAST of Carg20857 vs. ExPASy TrEMBL
Match: A0A1S4DZ79 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo OX=3656 GN=LOC103493764 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13 Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 0
BLAST of Carg20857 vs. TAIR 10
Match: AT2G25170.1 (chromatin remodeling factor CHD3 (PICKLE) ) HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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