Carg20737 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20737
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 10171063 .. 10174915 (+)
RNA-Seq ExpressionCarg20737
SyntenyCarg20737
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAGGTAATGGGAAGAAGAGAAAAAGGGACAAGCAGAACAGACTTCCGACTGAGAAGACTGATTCTTCTTCAGCAGAGCTAGCAGAACCTTGAGCCTATGGATGTAGAAAGAGAGACGGGGAATGAGTGAAGGATTAAGAATTTAGAGGAAGTGATTGATATGAACACCGATGTATGAGGAGGAGATGGACAATCATGGAAAGGAGAAGGAAGATGCAAAGCTTCTAGCTGACTATCCTCTTGTTGTATTTTTTTTTTTTTATGGAGGAGGAAGACTCCTAATTAGGCCTGAGGATGTGACCGGACGGTTAGGGTTTCAACTTGGGATCCAATTTTATTGGATTAAAGATCACCATAAAATAATAGTAAAAGGATGATAAAGATGATTATGATATAAGATGAACAATGATGATGAATGTAGTTTGGCAAGATGACAACTACATTCGGTCATTAAGGAACATAGCATACTGAATGATGAGGTAGGCTGTGTTTAAGGACATTAGTCACTTAATCATGTCTTATGTACATAATCGCTACAAAAAGGTATGCTCTTTGAAGTCATCTAAGTTGCCTGCACCGTAAGATTATAAATTTTAGGATCTTTGTTGGGGTTGTTCTGTCTTTATGGCCATTGATCTCATTTATCGTATATTTTTTCCGTGGATTCCAAACCTAGAATCAATTGCAAGTGAATTCTATTCTAGAGGTTAGATTAATTTATTCATATTTGGCATTTTCGTCACCAAATGGTTTGTCCCGATGGTGAGAAGTTAGGGTTCTGCAGAATACTCTCTGGGTTCTAGTCTTTTGAGTTGAAAACTTTAGTAAACTTTACAAAATGGGATCTTTTTTGGAGCGGGCAATAAGAGGCATAGTGCATAGGAATCGGCTCTTTGTATTTTTCGGTCTCTACCTATTGTGATTAATGTAGTTATGCTCCCCTATCATTAACACTCTATGTGCATACCAGTACCCAACCAATTGTGATATCTTCTTTCATCACTTTTGGGTGTTGTGGGAGGTTGTGTTTGCTGCATCTTACAAAACTCTCATTGAGACGTTTGCGAGAGGAAAAATAAGAGGGGTCAATTGAAGAATATAAATTAGAAGGAATTATATCAGGACTTAATCGGACCATGACAATAGTTTAGTCTTTTCCTTTTCTTTAAAAAAGGAAGATAGAGTTGCCCTTTGCTAGAGGCCTCACATTTCTTGGTTTAGGACATTGCATGCGAGGGAAATTGGGAGGGTCAGAGACAATTTTTATATTGTTATTTTTTTTTACAATTCGTTAATGCTTAAACTGTTATGATGGTGTGTGATTGTTTTTAACAATAACAATGGATCAACAAGAGATCTGTATGGGCAGGAATTTGCATATTTTTGAGGAATCCTGTCTCGTATGTACTTTTACCATTCACTCAGGCCAAAGGAAAATGAAAAAATATTCGCAAGAGCTTAGAGAAACGCCATTCACATTAATATGGAATTGGCAATCTGCCTTCGCCAAAGAGTAGGCCTCTCCTATTGTTGACTGCTAGTTTACTCATCTTCTCTACCTTTTAGTAAATGTCATTAGTTTAAACATATTGTTTTTGTTGACTGCAGTGCGTTGCTGGTTGATGGTGTTTTTGGTTGAATGCAACTTGGATTCCTGCTCTTCAAGTGTTCTGCCTTCCAGAATTATCTTCACTAAAAGCAGGAAGAACGGAGGGTAAGTGCGAAACCAGGAGACAGACAATTCTGTGATTTCTCTTATTTGTTTGGCTCCAAAATTTTTGTGACTGTTAGAATGAAAACCTATTTTTCAATGTGAGCTGAGGATCTGAGTTGTGGTTTTTGGTTTCAGGATTTGTAAGTGGCAGATGATTGTCCAACAATAATGCGTTCTTCTACTATGGAGAGCTAAGCCAGCCATGTTTAAGCTGGACGTTAGGAATTTATTCAGGAGGCGATCCCATCAGTTTCTGTTGGAATGCACTTGATTATGCCGTAGGAGGAATAGACAAAGTGGATATTGCTCTTTTTGGTTTGTGGGTAGAATGAGGGTTTCAGCAATCGGGTTTGTTGGGGCAATCTTTTTCTATTGAGAAGGCAGTGTCCTCTTCTTTTAGTCCTGCAACTTCATGAGTTGTTCAAGGTTATTTACCGAAATATGAAATGTATCATACTTAAGATGACATAGAGACAAGGCAGGTACATGAGATCCTGTATTATTTTTTTAGGCAATTCGTGGTTCTTAATTAACTGCTCCTGCCCACTATTTAACATAGTTATTTTTATTTTATTTGTTTCTCTACTACTTTCCGTAAGCTGTTTTATTCGATTCCCTCTAATTAAATAGTGCTCTTCTGGATCTTCAAATCTTGTTGGTTGATGAGTGATGAATGCCTTCAGTTAGTGACCATCAACCAATTTCCCGTTTCCATGGAAAAGGTAATCTTTTTTCAAGGCATTCCTTAACATTTTGCAGACTCTTTCTACGTGCTAATTTGCATACATTGTAACATCTTCTCGAGTCCACCCTTGTATTAAATTTATGAAATTCTTTGATACCGTTGTTGCATCATTTTAATTTAACAATCAGCTGGAGTAATCACATGCACCTTAGCTATGTTCTAAGTTCGAGGCAGAGAATGAGCACTATCAAAATTTTCGATTTGGTCCTTAAATTTTCAAATTCGTTTTGTTTTGAGCATTCAACTTCCAATGTCTACTTTAATTTCTGAACTTCTAAAAACCAATGATTTTGGCTTGAAGTCGTACTCTGTAAATAACAAGTTGCAGTGGTGGAAGTTCTGATGTCTATTATTTGCATTCTATTTACATTAGCAACATTTTGTTGCTTATGATTATTATTTTTTTATGGTTTATATACTTTTTAGGATATAGTACAATGTGAAAAATATGAACAGAAATGTGCATAGGTGACCCAAAATTTAATAGGGAAGAGATGAGTAGGTAAAATGTATAGTTTATAATAGAAGAAATTTGATGGGCATTCATATTAGTTAATTTTGGGAAGAAAAGGAACGGTGGAAATTGCTTGCAAAGAGGAGTAGGTGAGTGGGCGATGGATGCCGTGTGTTGTGGGGCGCCTCACAATAGTTGAAGAAATCAATTGTTGACTCATCATTGTGCTTTTTAATTTTAGTTTTGACTCCATATATAACTAACCAGTTGATCTTTAGGAACCCACCGTGGAACCTTCATTCCCTCTTAAGCTAGAAGGCATTAAAATGGTAATAGATCAGAACTCGGATGGGTCGAGGCTAACCAAGGCTTGGACCCATTTCAATCACACCTTGAGATCATTTAGGCTCGGGGAAAGGTGCGTCTTATGCTAGGTAAGCTCGAGACTAAGGCTAGCCCTAACTTCTTTATGGTCAATAGGGAACGACTCGAGCCTCTGGTCTCGTTCCCTCTGAGAAAGGAAAAATGTCCAAAACTCCAACTCAATCCTGGGTAAGGGTACATCATTATAACCTTATAAAAGGTAAATCCATTCTAAGCTTACAACCCTAAACCATTGTGTCTTTGTTACCTTGTGAATCATTTCATCCCCTAAATTACAAATCTATGCATAAAGATGACGAGCAATTATCATCTTACCATCTAATAACTTTTCTAAAACATTCTTGAAATCCTAGTTGAATTAAAAAGGAAAAAAAAGCAAGTTTATGGAAAGTATGTTAATTAATCCTAAGCTATCAGGGCATGATTGATAGTCGACAAGAAAAACCAATATTACCATTTAAGAAAGTAACAAGGATTCTAGACATGGATGACTGCGAAAAAAAGTCATCAATTTTGCCCAGCAATTCCAATTTGACTCACTTTGCAATGCAATAA

mRNA sequence

GTCAGGTAATGGGAAGAAGAGAAAAAGGGACAAGCAGAACAGACTTCCGACTGAGAAGACTGATTCTTCTTCAGCAGAGCTAGCAGAACCTTGAGCCTATGGATGTAGAAAGAGAGACGGGGAATGAGTGAAGGATTAAGAATTTAGAGGAAGTGATTGATATGAACACCGATGTATGAGGAGGAGATGGACAATCATGGAAAGGAGAAGGAAGATGCAAAGCTTCTAGCTGACTATCCTCTTGTTGGCATGATTGATAGTCGACAAGAAAAACCAATATTACCATTTAAGAAAGTAACAAGGATTCTAGACATGGATGACTGCGAAAAAAAGTCATCAATTTTGCCCAGCAATTCCAATTTGACTCACTTTGCAATGCAATAA

Coding sequence (CDS)

ATGTATGAGGAGGAGATGGACAATCATGGAAAGGAGAAGGAAGATGCAAAGCTTCTAGCTGACTATCCTCTTGTTGGCATGATTGATAGTCGACAAGAAAAACCAATATTACCATTTAAGAAAGTAACAAGGATTCTAGACATGGATGACTGCGAAAAAAAGTCATCAATTTTGCCCAGCAATTCCAATTTGACTCACTTTGCAATGCAATAA

Protein sequence

MYEEEMDNHGKEKEDAKLLADYPLVGMIDSRQEKPILPFKKVTRILDMDDCEKKSSILPSNSNLTHFAMQ
Homology
[Close]
BLAST of Carg20737 vs. NCBI nr
Match: KAG7017164.1 (hypothetical protein SDJN02_22276 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MYEEEMDNHGKEKEDAKLLADYPLVGMIDSRQEKPILPFKKVTRILDMDDCEKKSSILPS 60
          MYEEEMDNHGKEKEDAKLLADYPLVGMIDSRQEKPILPFKKVTRILDMDDCEKKSSILPS
Sbjct: 1  MYEEEMDNHGKEKEDAKLLADYPLVGMIDSRQEKPILPFKKVTRILDMDDCEKKSSILPS 60

Query: 61 NSNLTHFAMQ 71
          NSNLTHFAMQ
Sbjct: 61 NSNLTHFAMQ 70

The following BLAST results are available for this feature:
BLAST of Carg20737 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017164.13.6e-31100.00hypothetical protein SDJN02_22276 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg20737 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20737 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20737 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20737-RACarg20737-RAmRNA