Carg20679 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20679
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Annexin
Location	Carg_Chr18: 9092575 .. 9093280 (+)
RNA-Seq Expression	Carg20679
Synteny	Carg20679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTATTTCTCTTACTTATTTGCCCTTTTCGTCATTTTTACGTCAACGGTTCGAACCTCGTGCTAACATCTAACCCCTAGAGCCACGTGACGTTCCAACCCAGTTCCAATAATGCAGTTTTCGGACTGGGAGTCGTTGCATATTAGAGCATGATTCGCATCATTATGTTCGATAAAAGGAATGAGGGAAGCTATGCTTAAAAGACTAAAAACCCGTTACTCGTTGCAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

mRNA sequence

ATTCCAAACCAAATTTCAGTCTCTTTCTCTCTTTTGAAATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGAAGAATTCCCACCATATGATGAAGAATGAGCTGAATGAAGCTGCTACCTTATTATAATGAATCAGAAAAAGTTATGTTAAGAATGATATCTACGAATGAAATAAAGCTTTGACGTTTGTGTTAAA

Coding sequence (CDS)

ATGAAGGCTTCTTTCATTCTTCTTGCCATTCTCCTCTCCTTGCTTATGCTTCTCAACTTCTGCCATGCAGCAGCAGAGGAAAATGTGGCTGAACTCCATCTTGGCCAAGGTGGCGGTGGCGGTGGCGGTGGCGGAGCAGCCAAAAATGGAGAAGAAGATGAAGAAGAGAAGTTCAAGTTTCTTCATCACCACAAGCCATTCTTCAAGAAGCCACTTAAGCCAATTCCATTGAAGCATCCCATTCTGAAGAAGCCAATCCATGTTCATCCAATTCTGAAGAAGCCATTTAATCCACCAGTCTTCCACAGCCATCCTTGA

Protein sequence

MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKFLHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP

Homology

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: KAG7012885.1 (hypothetical protein SDJN02_25638 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60

Query: 61  LHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           LHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  LHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 105

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: XP_022945572.1 (uncharacterized protein LOC111449767 [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-49
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGA KNGEEDEEEKFKF
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60

Query: 61  LHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           LHHHKPFFKKP KPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 105

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: XP_023542299.1 (uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 3.5e-46
Identity = 102/106 (96.23%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQ-GGGGGGGGGAAKNGEEDEEEKFK 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLGQ GGGGGGGGGA KNGEEDEEEKFK
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGQGGGGGGGGGGATKNGEEDEEEKFK 60

Query: 61  FLHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           FLHHHKPFFKKP KPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  FLHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: KAG6573818.1 (hypothetical protein SDJN03_27705, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 3.5e-46
Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQ  GGGGGGGA KNGEEDEEEKFKF
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQ--GGGGGGGATKNGEEDEEEKFKF 60

Query: 61  LHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           LHHHKPFFKKP KPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 103

[Close]

BLAST of Carg20679 vs. NCBI nr
Match: XP_023542298.1 (E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 102/108 (94.44%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQ---GGGGGGGGGAAKNGEEDEEEK 60
           MKASFILLAILLSLLMLLNF HAAAEENVAELHLGQ   GGGGGGGGGA KNGEEDEEEK
Sbjct: 1   MKASFILLAILLSLLMLLNFSHAAAEENVAELHLGQGGGGGGGGGGGGATKNGEEDEEEK 60

Query: 61  FKFLHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           FKFLHHHKPFFKKP KPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  FKFLHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 108

[Close]

BLAST of Carg20679 vs. ExPASy TrEMBL
Match: A0A6J1G1A9 (uncharacterized protein LOC111449767 OS=Cucurbita moschata OX=3662 GN=LOC111449767 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.8e-49
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGA KNGEEDEEEKFKF
Sbjct: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGATKNGEEDEEEKFKF 60

Query: 61  LHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           LHHHKPFFKKP KPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 105

[Close]

BLAST of Carg20679 vs. ExPASy TrEMBL
Match: A0A6J1HSQ8 (uncharacterized protein LOC111466433 OS=Cucurbita maxima OX=3661 GN=LOC111466433 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           MKASFILLAILLS L+LLNFCHAAAEENVAEL LGQGGGGGG GGA KN EEDEEEKFKF
Sbjct: 1   MKASFILLAILLSFLLLLNFCHAAAEENVAELQLGQGGGGGGSGGATKNEEEDEEEKFKF 60

Query: 61  LHHHKPFFKKPLKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 106
           LHHHKPFFKKP KPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP
Sbjct: 61  LHHHKPFFKKPFKPIPLKHPILKKPIHVHPILKKPFNPPVFHSHP 105

[Close]

BLAST of Carg20679 vs. ExPASy TrEMBL
Match: A0A5A7SY00 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 69/133 (51.88%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           M+ + I L ILLS L+L+NFC+ AAEE+VAE   G+    G  G  AKNGEE++EEKFKF
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCY-AAEESVAEFQPGK----GAAGVTAKNGEEEQEEKFKF 448

Query: 61  LHHHKPFFKKP-LKPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKP LKPIP KHP L                           KKPI VHP  
Sbjct: 449 LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 508

[Close]

BLAST of Carg20679 vs. ExPASy TrEMBL
Match: A0A5D3CG71 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 69/133 (51.88%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           M+ + I L ILLS L+L+NFC+ AAEE+VAE   G+    G  G  AKNGEE++EEKFKF
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCY-AAEESVAEFQPGK----GAAGVTAKNGEEEQEEKFKF 60

Query: 61  LHHHKPFFKKP-LKPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKP LKPIP KHP L                           KKPI VHP  
Sbjct: 61  LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 120

[Close]

BLAST of Carg20679 vs. ExPASy TrEMBL
Match: E5GCK5 (Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 69/133 (51.88%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 1   MKASFILLAILLSLLMLLNFCHAAAEENVAELHLGQGGGGGGGGGAAKNGEEDEEEKFKF 60
           M+ + I L ILLS L+L+NFC+ AAEE+VAE   G+    G  G  AKNGEE++EEKFKF
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCY-AAEESVAEFQPGK----GAAGVTAKNGEEEQEEKFKF 438

Query: 61  LHHHKPFFKKP-LKPIPLKHPIL---------------------------KKPIHVHPIL 106
           LHHHKP++KKP LKPIP KHP L                           KKPI VHP  
Sbjct: 439 LHHHKPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFF 498

The following BLAST results are available for this feature:

BLAST of Carg20679 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012885.1	1.2e-49	100.00	hypothetical protein SDJN02_25638 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022945572.1	9.8e-49	98.10	uncharacterized protein LOC111449767 [Cucurbita moschata]	[more]
XP_023542299.1	3.5e-46	96.23	uncharacterized protein LOC111802236 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6573818.1	3.5e-46	96.19	hypothetical protein SDJN03_27705, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023542298.1	6.0e-46	94.44	E3 ubiquitin-protein ligase ARIH1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg20679 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1A9	4.8e-49	98.10	uncharacterized protein LOC111449767 OS=Cucurbita moschata OX=3662 GN=LOC1114497...	[more]
A0A6J1HSQ8	1.1e-45	93.33	uncharacterized protein LOC111466433 OS=Cucurbita maxima OX=3661 GN=LOC111466433...	[more]
A0A5A7SY00	3.2e-21	51.88	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 S...	[more]
A0A5D3CG71	3.2e-21	51.88	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 ...	[more]
E5GCK5	3.2e-21	51.88	Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Carg20679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20679-RA	Carg20679-RA	mRNA