Carg20603 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20603
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	nudC domain-containing protein 2-like
Location	Carg_Chr13: 342067 .. 344900 (-)
RNA-Seq Expression	Carg20603
Synteny	Carg20603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACTTCTCGTTGGAGAAAAAGGAAGGCACTGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAGCCCTAAGAAATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTTTTCTCTCTACTCTTATCAATTGGATCTTCTGAATTTTCAATTTGAACGAATGAATTCAATGTTGTATGAGTCTTTTGATCTCTGTGCTCGCTTGGTTGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCGTTGCATCTTTAAGGATTTAATTTTGAAATTTTGATCTATTGCTTCGTTTATGATTGTACCAATTGCTTTCAATCATTGATTTGCAGCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGGTGATTGCAAATGCTCACTTGAATGACTAAACGGAATCTTGATTGTTATACTTATACACCAAATAAATTTCATGGGACTCAGTTTTGGTGTCTCTTTTTTATCTTCCCCTTTTAATTGCTCCACTTTTGTCTATTTTGTAATGTAATTGTTTTGGTTATTTTGGGTGGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTTGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGGTCTGTTTTTTTTTTACTCCAGACTTTTGATGTATTCTAGATAATATGCTTATGCTTTTGTGTTTTCCATGTTTGTTTTGATTTATGTACTTTTTGTTTCCCTTCTTGAGCATGTTTAGCGTTTTTATTCGAAGATCGATTGTTTCAATTATCCCAATAGATTTTTCATCCTATGAGGCTAGGTTTTAGTTGTTGGTGCTCATGGTTAGGAGGTTTATTTTATTGAGTAAATAGTTAGTGAGATGTTCTGATAACTTCTCGATGTTGATTTCTGGGACGAAGCTAATGTGCCTTGTCATAATTATGAGACAGATGGAGAGGCTAACCTGTCTGGAAAATCATATTCACGTTGTTGGCCTGATAAGAAGAATTGGAAAGCTTTCTATAAAATGTTAATGATTTGACAGTTTTGCAGTATAGGCTTGGTGGACTGAGTTGCTGTCTGTGAGCTGCAGTTCCAGAGGTCGTTAAGAATGTAGCACAACTTATGAGAATCCCTGCGTCCTCCTCCTATCCTTCAGAAAAACTTCTTCTCTGAACTCAAACATGAGATCTCCAACTTTTATCTTAACTAATGTAGGGTAGCTGAAACATTCTTCCAAAGTTTGCTTCGGATAAGAGAGGGCCTGGTCTAATCTATACATCACTAAGGACCATTGAGAGCATACTCTGCAAGTGTTCTTTTTTTTTTTTTTTTTTCTTTTTTTCAAGCCCATATCATTTGAGACATCTCTAAAAACTTATTCAGGGGCACTGCACCCAACAATTGTGAGAAAAAAACTCCCAACTCAATAGACTAACTTTATGTTCGAGTGATACATTATCTCCTTTCCTTTAGATAGAGGTCTTCCTTCAAGGCACTCACGGGATGACTTGAACCTTTGACGTGCTCTTGTACCAACTGATGTAGGATAGATGACCTGGTTTTTCCACTGTAGAAGCTGATATGAGAGAGGTCAATTATGTCTTTACCTCATCCACGACCCAGCTCAAGAGTTCACCCTGTAAGGCTACTCCATTTTGAGCCTATCTTTGGAGACAACCTATAGAACCCAATGGAGTGGAAAGAAAGGCTCCCATAACTCTATCCCGAGTTTAAGGGATGGTTTGCATCACTCGTATTTTTAAGCTTTTAGTTTTATTTTGGATGGAATAGGAATAACTATTGGGTTGCATTCAACCTTTGCATATGACGTTTCTTGTCTGATTCTGGTTTAGTAACTACAAACGTTGTCTACTCTGAATATCAAGTCAACTCCCACGGTGAAAGGTAGTTCATTAATTATGGATGAGAGAGTTGTTGGATTATTGTTAATTACTAAAGTTTTATTAGGTGCTGGTTTTATATATCGGTTTTATATATCCCGAATCGGCAGTGTTGTTATGTCTTTGTATGGCCTGCTATTGTAAAGTTATGATATCTTATAAATACACAAACACATTTCTTTTCCTACAAGATGTCAGAAGTCCTGAATCAAGTGTCAGTTATGTTGTGAAATCTTGAAACTTAATCTGTATTACTTATTTCTCTGCAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGACGAAGATAGTTTTGCATTTATAACTTGCAAGGGCGTGACATTTTGCTAATGCTCGGTAAATAATGTGTAGATTTTCTACGGGTCTTGATTTATGCAATCCATATAATGACTGCTATTGCGAAAATGATGTGTACTGGGTTTTCATGTAATCGCTGCAATGAACTGAAAATATTTATGTGATATAAATTTAACTTCCAAATATTTTGTATTATAGTTTAACCTTCTATTTGGTTTGATATAAACCAGAGTTCCAAATTTGATCGCAGATGCAAGTTCATGGTAAAAATAGCGAACCTGGTACCATCATTCTCTATATATTTGTTTATCCAAATCCTATTCAGTAAAATATGTTGA

mRNA sequence

GGAACTTCTCGTTGGAGAAAAAGGAAGGCACTGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAGCCCTAAGAAATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTTGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGACGAAGATAGTTTTGCATTTATAACTTGCAAGGGCGTGACATTTTGCTAATGCTCGGTAAATAATGTGTAGATTTTCTACGGGTCTTGATTTATGCAATCCATATAATGACTGCTATTGCGAAAATGATGTGTACTGGGTTTTCATGTAATCGCTGCAATGAACTGAAAATATTTATGTGATATAAATTTAACTTCCAAATATTTTGTATTATAGTTTAACCTTCTATTTGGTTTGATATAAACCAGAGTTCCAAATTTGATCGCAGATGCAAGTTCATGGTAAAAATAGCGAACCTGGTACCATCATTCTCTATATATTTGTTTATCCAAATCCTATTCAGTAAAATATGTTGA

Coding sequence (CDS)

ATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTTGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Protein sequence

MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNVEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG

Homology

[Close]

BLAST of Carg20603 vs. NCBI nr
Match: KAG7019138.1 (NudC domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNVEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFD 120
           NPPYLNVEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFD
Sbjct: 61  NPPYLNVEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFD 120

Query: 121 FSQAQFSGNCPDPRSFMGGIRLG 144
           FSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 FSQAQFSGNCPDPRSFMGGIRLG 143

[Close]

BLAST of Carg20603 vs. NCBI nr
Match: XP_022964859.1 (nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC domain-containing protein 2-like [Cucurbita maxima] >XP_023518977.1 nudC domain-containing protein 2-like [Cucurbita pepo subsp. pepo] >KAG6583365.1 NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 142/158 (89.87%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 144
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 158

[Close]

BLAST of Carg20603 vs. NCBI nr
Match: XP_038894388.1 (nudC domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 5.4e-74
Identity = 137/158 (86.71%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLE+VNIYINLPPNVHSKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEDVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPP+LN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY+TDLEQK
Sbjct: 61  NPPFLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 144
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRLG 158

[Close]

BLAST of Carg20603 vs. NCBI nr
Match: XP_008457374.1 (PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 135/156 (86.54%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of Carg20603 vs. NCBI nr
Match: XP_004151457.1 (nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical protein Csa_023350 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 133/156 (85.26%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of Carg20603 vs. ExPASy Swiss-Prot
Match: Q8WVJ2 (NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-16
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG------- 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G       
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGREILKGK 65

Query: 68  -------NPPYLNVEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQ 127
                  +     +ED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+
Sbjct: 66  LFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLE 125

Query: 128 RFQEENPGFDFSQAQFSGN 130
           RFQ+ENPGFDFS A+ SGN
Sbjct: 126 RFQKENPGFDFSGAEISGN 144

[Close]

BLAST of Carg20603 vs. ExPASy Swiss-Prot
Match: Q9CQ48 (NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-16
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG------- 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G       
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGK 65

Query: 68  -------NPPYLNVEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQ 127
                  +     +ED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+
Sbjct: 66  LFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLE 125

Query: 128 RFQEENPGFDFSQAQFSGN 130
           RFQ+ENPGFDFS A+ SGN
Sbjct: 126 RFQKENPGFDFSGAEISGN 144

[Close]

BLAST of Carg20603 vs. ExPASy Swiss-Prot
Match: Q5M823 (NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-16
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG--------------NPPYLNV 81
           +W QTLEEV I + +PP   ++   C +QS HV + + G              +     +
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTL 79

Query: 82  EDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQA 130
           ED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS A
Sbjct: 80  EDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGA 139

[Close]

BLAST of Carg20603 vs. ExPASy Swiss-Prot
Match: Q9STN7 (Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 41/158 (25.95%), Postives = 70/158 (44.30%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG---------------NPPYL 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG               +  + 
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  NVEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 128
           N+ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

[Close]

BLAST of Carg20603 vs. ExPASy TrEMBL
Match: A0A6J1I2V0 (nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469416 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 142/158 (89.87%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 144
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 158

[Close]

BLAST of Carg20603 vs. ExPASy TrEMBL
Match: A0A6J1HPE6 (nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464843 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 142/158 (89.87%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 144
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 158

[Close]

BLAST of Carg20603 vs. ExPASy TrEMBL
Match: A0A5A7SMF6 (NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00610 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 135/156 (86.54%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of Carg20603 vs. ExPASy TrEMBL
Match: A0A1S3C618 (nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 135/156 (86.54%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of Carg20603 vs. ExPASy TrEMBL
Match: A0A0A0LV57 (CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.1e-72
Identity = 133/156 (85.26%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of Carg20603 vs. TAIR 10
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 271.2 bits (692), Expect = 4.9e-73
Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS H+EVGIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKR+KGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 156

[Close]

BLAST of Carg20603 vs. TAIR 10
Match: AT4G27890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 41/158 (25.95%), Postives = 70/158 (44.30%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG---------------NPPYL 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG               +  + 
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  NVEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 128
           N+ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

The following BLAST results are available for this feature:

BLAST of Carg20603 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019138.1	1.1e-79	100.00	NudC domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022964859.1	2.6e-76	89.87	nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC ...	[more]
XP_038894388.1	5.4e-74	86.71	nudC domain-containing protein 2 [Benincasa hispida]	[more]
XP_008457374.1	2.3e-72	86.54	PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC do...	[more]
XP_004151457.1	1.5e-71	85.26	nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical prot...	[more]

BLAST of Carg20603 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WVJ2	4.1e-16	35.25	NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1	[more]
Q9CQ48	4.1e-16	35.25	NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1	[more]
Q5M823	9.1e-16	36.80	NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV...	[more]
Q9STN7	1.4e-08	25.95	Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1	[more]

BLAST of Carg20603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2V0	1.3e-76	89.87	nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC11146941...	[more]
A0A6J1HPE6	1.3e-76	89.87	nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]
A0A5A7SMF6	1.1e-72	86.54	NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C618	1.1e-72	86.54	nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV...	[more]
A0A0A0LV57	7.1e-72	85.26	CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=...	[more]

BLAST of Carg20603 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58740.1	4.9e-73	82.05	HSP20-like chaperones superfamily protein	[more]
AT4G27890.1	1.0e-09	25.95	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.740	Single helix bin	coord: 85..116 e-value: 1.8E-7 score: 32.9
None	No IPR available	PANTHER	PTHR12356:SF18	HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN	coord: 2..133
None	No IPR available	CDD	cd06467	p23_NUDC_like	coord: 21..89 e-value: 1.66987E-23 score: 85.677
IPR007052	CS domain	PFAM	PF04969	CS	coord: 21..68 e-value: 1.1E-7 score: 32.8
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 17..72 e-value: 3.3E-14 score: 54.9
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 20..120
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20603-RA	Carg20603-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051082	unfolded protein binding