Carg20597 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20597
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 315169 .. 316708 (-)
RNA-Seq ExpressionCarg20597
SyntenyCarg20597
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTAATGCTCGGCCTCTCTTCTCCCTCCAAATTCACACACTGCACCGCCGTATACGCCACCGTCTCCACCGCCTCCACTTCCTTCATCTCCGCCGCTCTAACCCTCTTATCCACTACATTCCAAACCTCGCCGCCCCCAATTCGCGCCACTGCAAATTCCGCCACCGTCACCACACCTTCACCCCCGCCATCTCTGAACACCGCCTTTTTCCCCGTCAAAATCTCCAGCAGTACAATTCCCTAGCCCGTACACATCGCATTTCGCCGTCGAAATCTTCGATACGTAATACTCCGGATCGATGTACCCGATTGTACCCCCGACGGCGCTTTCCGTTGAAGCTTCCGGATGCCGCATCATTGAGAATCCGAAATCGGAGACACTTTCGCTGTGAAATTTCCGTCTAATAGTATGTTTGAGGATTTGATGTCTCGGTGGATTATCGGTGGGACTGCGTAATTGTGAAGGTACTCGATTCCTCTGGCTGCGTCTAATGCGATTTTGATTCTCATTTTCCATGTATTTAGTACTGTTACCCCGTTATCTTTGTTGTGTAAATGGTCATGGAGGGAACCATTTGGCATGTATTCATAAACTAGAAGCCGCTCATCGTTTTCTTGGCAGTAACCCACCATGCCCACAAGGTGTTTGTGATTAAGCCGCAATAGCGTTGCTAGTTCTGAACTAAATGCGTTTTGTTTCTCGTTGCTCTTGGTTTCTCCTCTTTTGATAGCTACCTCAGTTCCATTTGATAGCTCGCCTTTGTATACCACTCCGAAGCTCCCTGCTCCTATCTTGTTGTCAGAGGAGAAATTGCTTGTTGCAGCAGCAAGCTCCGTTAGAGAAAATGACCGACCGGAGGAAGGATTTATGTTCAGCTCTTGATGATCTGATGCAGCTAAGCAGTTTGATATACAGAACAAAATGGTGCAAGCTCCGGCTAAAACCCCAATTGCTCCAACTATCAGAAACGCCACGGCGAGCCCGTTTCTGGCCTTTTTTGGTGAAGATTTTGGATTCTTTGGCAATAGCACTGCAAATGGGAGCTCTTCCTGGCAGGATTTGCAAATATTTCCAGACCCATCACAGAGAAACGCTGAATTTGGATAGACGCCGCAGAGCTGCAAGGATCTTGAACACAAGGGCCAGGGATTATCATCCCCAATGGAAGAACAGCCGGTGAGTATCTATTTGGCCTTGAACCAGCACATTATTGTCAAATTACTTGTCTTCAACCCACATAACTGGCTTGATCCTGCTGTGATTAGCTCGAATGAATCGCTGCCATTGCTCTTGTTTTGAATGTTGAGTTCTTCTGCTCCTCCACCCCAACATGAAACCACTCCATGCTTTTGCCTTAATCCACAAGTGAAGCTCGTCCCCAATGCAAGGGCTGAGTATTCATGAGCTGAATTGGGAGGAACCTCCAATTGGCCTGCGCCGTTGTTTCCCTTGCATACTAAAGCGCCGCCCGACGCCGTCAACCCACAGACATGAGACTCTCCGGCTACTAAGCTCACCATTGACAGATTCCTGA

mRNA sequence

ATGTCGGTAATGCTCGGCCTCTCTTCTCCCTCCAAATTCACACACTGCACCGCCGTATACGCCACCGTCTCCACCGCCTCCACTTCCTTCATCTCCGCCGCTCTAACCCTCTTATCCACTACATTCCAAACCTCGCCGCCCCCAATTCGCGCCACTGCAAATTCCGCCACCGTCACCACACCTTCACCCCCGCCATCTCTGAACACCGCCTTTTTCCCCCTACCTCAGTTCCATTTGATAGCTCGCCTTTGTATACCACTCCGAAGCTCCCTGCTCCTATCTTGTTGTCAGAGGAGAAATTGCTTGTTGCAGCAGCAAGCTCCGTTAGAGAAAATGACCGACCGGAGGAAGGATTTATGTTCAGCTCTTGATGATCTGATGCAGCTAAGCAGTTTGATATACAGAACAAAATGGTGCAAGCTCCGGCTAAAACCCCAATTGCTCCAACTATCAGAAACGCCACGGCGAGCCCGTTTCTGGCCTTTTTTGGTGAAGATTTTGGATTCTTTGGCAATAGCACTGCAAATGGGAGCTCTTCCTGGCAGGATTTGCAAATATTTCCAGACCCATCACAGAGAAACGCTGAATTTGGATAGACGCCGCAGAGCTGCAAGGATCTTGAACACAAGGGCCAGGGATTATCATCCCCAATGGAAGAACAGCCGCTCGTCCCCAATGCAAGGGCTGAGTATTCATGAGCTGAATTGGGAGGAACCTCCAATTGGCCTGCGCCGTTGTTTCCCTTGCATACTAAAGCGCCGCCCGACGCCGTCAACCCACAGACATGAGACTCTCCGGCTACTAAGCTCACCATTGACAGATTCCTGA

Coding sequence (CDS)

ATGTCGGTAATGCTCGGCCTCTCTTCTCCCTCCAAATTCACACACTGCACCGCCGTATACGCCACCGTCTCCACCGCCTCCACTTCCTTCATCTCCGCCGCTCTAACCCTCTTATCCACTACATTCCAAACCTCGCCGCCCCCAATTCGCGCCACTGCAAATTCCGCCACCGTCACCACACCTTCACCCCCGCCATCTCTGAACACCGCCTTTTTCCCCCTACCTCAGTTCCATTTGATAGCTCGCCTTTGTATACCACTCCGAAGCTCCCTGCTCCTATCTTGTTGTCAGAGGAGAAATTGCTTGTTGCAGCAGCAAGCTCCGTTAGAGAAAATGACCGACCGGAGGAAGGATTTATGTTCAGCTCTTGATGATCTGATGCAGCTAAGCAGTTTGATATACAGAACAAAATGGTGCAAGCTCCGGCTAAAACCCCAATTGCTCCAACTATCAGAAACGCCACGGCGAGCCCGTTTCTGGCCTTTTTTGGTGAAGATTTTGGATTCTTTGGCAATAGCACTGCAAATGGGAGCTCTTCCTGGCAGGATTTGCAAATATTTCCAGACCCATCACAGAGAAACGCTGAATTTGGATAGACGCCGCAGAGCTGCAAGGATCTTGAACACAAGGGCCAGGGATTATCATCCCCAATGGAAGAACAGCCGCTCGTCCCCAATGCAAGGGCTGAGTATTCATGAGCTGAATTGGGAGGAACCTCCAATTGGCCTGCGCCGTTGTTTCCCTTGCATACTAAAGCGCCGCCCGACGCCGTCAACCCACAGACATGAGACTCTCCGGCTACTAAGCTCACCATTGACAGATTCCTGA

Protein sequence

MSVMLGLSSPSKFTHCTAVYATVSTASTSFISAALTLLSTTFQTSPPPIRATANSATVTTPSPPPSLNTAFFPLPQFHLIARLCIPLRSSLLLSCCQRRNCLLQQQAPLEKMTDRRKDLCSALDDLMQLSSLIYRTKWCKLRLKPQLLQLSETPRRARFWPFLVKILDSLAIALQMGALPGRICKYFQTHHRETLNLDRRRRAARILNTRARDYHPQWKNSRSSPMQGLSIHELNWEEPPIGLRRCFPCILKRRPTPSTHRHETLRLLSSPLTDS
Homology
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BLAST of Carg20597 vs. NCBI nr
Match: KAG7019132.1 (hypothetical protein SDJN02_18090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 540.8 bits (1392), Expect = 6.8e-150
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0 

Query: 1   MSVMLGLSSPSKFTHCTAVYATVSTASTSFISAALTLLSTTFQTSPPPIRATANSATVTT 60
           MSVMLGLSSPSKFTHCTAVYATVSTASTSFISAALTLLSTTFQTSPPPIRATANSATVTT
Sbjct: 1   MSVMLGLSSPSKFTHCTAVYATVSTASTSFISAALTLLSTTFQTSPPPIRATANSATVTT 60

Query: 61  PSPPPSLNTAFFPLPQFHLIARLCIPLRSSLLLSCCQRRNCLLQQQAPLEKMTDRRKDLC 120
           PSPPPSLNTAFFPLPQFHLIARLCIPLRSSLLLSCCQRRNCLLQQQAPLEKMTDRRKDLC
Sbjct: 61  PSPPPSLNTAFFPLPQFHLIARLCIPLRSSLLLSCCQRRNCLLQQQAPLEKMTDRRKDLC 120

Query: 121 SALDDLMQLSSLIYRTKWCKLRLKPQLLQLSETPRRARFWPFLVKILDSLAIALQMGALP 180
           SALDDLMQLSSLIYRTKWCKLRLKPQLLQLSETPRRARFWPFLVKILDSLAIALQMGALP
Sbjct: 121 SALDDLMQLSSLIYRTKWCKLRLKPQLLQLSETPRRARFWPFLVKILDSLAIALQMGALP 180

Query: 181 GRICKYFQTHHRETLNLDRRRRAARILNTRARDYHPQWKNSRSSPMQGLSIHELNWEEPP 240
           GRICKYFQTHHRETLNLDRRRRAARILNTRARDYHPQWKNSRSSPMQGLSIHELNWEEPP
Sbjct: 181 GRICKYFQTHHRETLNLDRRRRAARILNTRARDYHPQWKNSRSSPMQGLSIHELNWEEPP 240

Query: 241 IGLRRCFPCILKRRPTPSTHRHETLRLLSSPLTDS 276
           IGLRRCFPCILKRRPTPSTHRHETLRLLSSPLTDS
Sbjct: 241 IGLRRCFPCILKRRPTPSTHRHETLRLLSSPLTDS 275

The following BLAST results are available for this feature:
BLAST of Carg20597 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019132.16.8e-150100.00hypothetical protein SDJN02_18090, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20597 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20597 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20597 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20597-RACarg20597-RAmRNA