Carg20595 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20595
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 311366 .. 313509 (-)
RNA-Seq ExpressionCarg20595
SyntenyCarg20595
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCACTCACAACCCATTTAGCCCACCCACTTCACAATTTCCTTTCCAGTTGAATGATGTTCAGCAATGGCGCCGCATCCGTCTCTTGCTGTAATGGCGACTGGCGATGAATCAAGGTTTGTGCGCGGGTCCCTGTTTTCTTCAATTCAATCGATCATACCTTCTGGTCGAAATGAAATGGTTGAGTTTCTTTTGTGGTTAATTTGATCTCTTGATTTGACTTTGCAGCCAAATGCGACTTTAGCAGAAATTGTGCCATTGATCCAGAACGAAATGTGGAGCAATATCCCCAACAGGTCATTCGGCTTCTGTTCATTCATTCCAAAATCCTGTAATTGATTTCCTTACAATATCTTGCCCTAAATATTTATCTGAAATTTCTTTGGATTCTAGCATTATCAGTTAAATTAAGTTAGGGCAATCTCTGCTGTTCTATTATGGAAACTTGGAAGGATTAATTTGAAGCGACTTCTTCTGTAATATTGTCAGCTTATTTAAATATCTGTTGTATTTTTTATTGTTTCATTTGACCTTGGATCTGCTTTGATATTGTGAAAGAATAGCAATAGTTAATGATCTAAGTTATTTGAGGAATTTGGACCTCCCTTTCTTGAGATCACTCGAGCTCTAAACCAACTAAATCAATGCCTTACTAACCTTCTTTCCCACTCTCTCTATCTATAACCAAAATCCCTAGATTCCTTCTAATGCCATTTCTATCATCTTCTTTGAGACTTGTCTGTTCATTGTTGGGTAGGCAAAAGAATAGCAATTGTTCAGTTCTGTGTTCCTTTTTCGTTCACGTTTGTGGGGCTGAGGGAGGAAAGAGACAGATTATAGCTATCAATTGAATGTGTTGCCTTGAAGACAAATAGCTATCAGTTTGCTGCTCTTCTCATTTGCTAAATATGTTTCTCCTTTTCTGGTCCTCGACCGGGATTGACTCAACTTAACTCGACTCGACTCTTTTCAGCAAATATTTTATTGACTGTGCTTGTTCTCTTCATGTGCAAAACCTGATACGTTGTGAAATCCTACATTAGTTGGAGAAAAGAACGAAACATTCCTTATAAGGGTGTGGAAACCCCTCCCAATTTTAAAACCTTGAAGGGAAATCCAGAAGGGAAAATTCAAAGAGGACAATATCTGCTAGCGGTGTGTGTAGGCTGTTACAAATGGTATCATCCAAATACCAAACGATGTGCTAGCAAGGACGCTGAGCCTCGAAGGGGGTAGATTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTCATTATAAAGATGTGAAAACCTCTCTCTATCAAACCCGTTTTAAAATCTTGAGGGGAAGCCCATAAAGAAAAACCACAATATCTGCTAGTGGTGGGATTGGACGGTGGACTCTTACCTATGTGAATATGTGGCTTTGTTTTTTATTTTCTTTATTCTTTTCTGAGGATCTGTGAATGAAAATGATACTATGTTGAATACATAATAGAAGAAGTAGATAAAACGTTCACATATAGAAGAAATGTGATGTAGGGAAACACGAGGGACCAACACGTGATCCTCTCGTGCTCGTGTACCCAATCAAGTGAGAAGAAAAATGAAGTGGATGTACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTTTAACAGGTGAGTCTCTTTGTTGTTTGGAAGTGTAGGATTGATCAACACAATTGCTTCTTCCTCACCTTCTGTTCATCATTTTGCAGTTTCCAAACACAGAGCTCTAGTTTTGATCTGATTTGATTGCATTTGTCTCGTCGGGTTTGTCATGGATCTTTCAGGTTTGTTTGCAAATAAGTCCTTAAACTTTTCAAACTTTCTAATAAGTCCTTCAACCTTATTACTAAATTGTCCTCTTGAATTTTTCTTATTACCTATAATAATGAAAATAAGTAATTTTATTTTTATAACAAATAAAATAGTTTACATTTGTATTATAGAAAAATTATGAAAATAGAGAATTTTAAAAGCTTTGTCGTTTTGGATGACAGGGAAATCATATTGACACGTGGAAAGTTAGACTTAAACACACGAATAATCTAAATTAATTTAATAGAGACTAAATTCCAATTTATTAACTAAATAATTATT

mRNA sequence

TTTTTCACTCACAACCCATTTAGCCCACCCACTTCACAATTTCCTTTCCAGTTGAATGATGTTCAGCAATGGCGCCGCATCCGTCTCTTGCTGTAATGGCGACTGGCGATGAATCAAGAAATTGTGCCATTGATCCAGAACGAAATGTGGAGCAATATCCCCAACAGGGAAACACGAGGGACCAACACGTGATCCTCTCGTGCTCGTGTACCCAATCAAGTGAGAAGAAAAATGAAGTGGATGTACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTTTAACAGTTTCCAAACACAGAGCTCTAGTTTTGATCTGATTTGATTGCATTTGTCTCGTCGGGTTTGTCATGGATCTTTCAGGTTTGTTTGCAAATAAGTCCTTAAACTTTTCAAACTTTCTAATAAGTCCTTCAACCTTATTACTAAATTGTCCTCTTGAATTTTTCTTATTACCTATAATAATGAAAATAAGTAATTTTATTTTTATAACAAATAAAATAGTTTACATTTGTATTATAGAAAAATTATGAAAATAGAGAATTTTAAAAGCTTTGTCGTTTTGGATGACAGGGAAATCATATTGACACGTGGAAAGTTAGACTTAAACACACGAATAATCTAAATTAATTTAATAGAGACTAAATTCCAATTTATTAACTAAATAATTATT

Coding sequence (CDS)

ATGGCGCCGCATCCGTCTCTTGCTGTAATGGCGACTGGCGATGAATCAAGAAATTGTGCCATTGATCCAGAACGAAATGTGGAGCAATATCCCCAACAGGGAAACACGAGGGACCAACACGTGATCCTCTCGTGCTCGTGTACCCAATCAAGTGAGAAGAAAAATGAAGTGGATGTACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTTTAACAGTTTCCAAACACAGAGCTCTAGTTTTGATCTGATTTGA

Protein sequence

MAPHPSLAVMATGDESRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLLIWVFEFIGTTFSTFNSFQTQSSSFDLI
Homology
[Close]
BLAST of Carg20595 vs. NCBI nr
Match: KAG7019130.1 (hypothetical protein SDJN02_18088 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MAPHPSLAVMATGDESRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVL 60
          MAPHPSLAVMATGDESRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVL
Sbjct: 1  MAPHPSLAVMATGDESRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVL 60

Query: 61 KGGSVLLIWVFEFIGTTFSTFNSFQTQSSSFDLI 95
          KGGSVLLIWVFEFIGTTFSTFNSFQTQSSSFDLI
Sbjct: 61 KGGSVLLIWVFEFIGTTFSTFNSFQTQSSSFDLI 94

[Close]
BLAST of Carg20595 vs. NCBI nr
Match: KAG6583359.1 (hypothetical protein SDJN03_19291, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 14 DESRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLLIWVFEF 73
          D SRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLLIWVFEF
Sbjct: 7  DFSRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLLIWVFEF 66

Query: 74 IGTTFSTFNSFQTQSSSFDLI 95
          IGTTFSTFNSFQTQSSSFDLI
Sbjct: 67 IGTTFSTFNSFQTQSSSFDLI 87

The following BLAST results are available for this feature:
BLAST of Carg20595 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019130.13.5e-45100.00hypothetical protein SDJN02_18088 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6583359.11.7e-3698.77hypothetical protein SDJN03_19291, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg20595 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20595 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20595 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20595-RACarg20595-RAmRNA