Carg20579 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20579
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	truncated transcription factor CAULIFLOWER A
Location	Carg_Chr12: 567291 .. 567982 (+)
RNA-Seq Expression	Carg20579
Synteny	Carg20579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGGTAAAATTTTATATTTATTATTATTATAAATTAATTAATTAATCAAAAAAAAAAAAACCCCTTTTATTTATTTATTTTATATAAATTTAAATATCTAATTTAATTTATGGGTTATTTATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGATCTTATCTTATAAAAATATATTACATTAAACCATACTCTATTTCAACCCATTGTGACAATAATATATGTAGTAATTAATACATGAACCATATATGATCTAATGCTCGATTTTCATCTAATTTTTTGTTCTCGAGTTCGGTTGAAATATGGTTACGTTGTTTAATTTCTTCGGTGGAAGACTGATTTTGGATAGCGAGATTTGAACCTCTGATCTTGTGATCGAGAGAAACTTACATTGACTTTTGATTTCTCTAGTTGACTTTTGGTCTTTTTGATTGAACGTTGCTAAAAATATGTTGAAATTTGTAATTCTCGATTGTATGACTGTATC

mRNA sequence

ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGATCTTATCTTATAAAAATATATTACATTAAACCATACTCTATTTCAACCCATTGTGACAATAATATATGTAGTAATTAATACATGAACCATATATGATCTAATGCTCGATTTTCATCTAATTTTTTGTTCTCGAGTTCGGTTGAAATATGGTTACGTTGTTTAATTTCTTCGGTGGAAGACTGATTTTGGATAGCGAGATTTGAACCTCTGATCTTGTGATCGAGAGAAACTTACATTGACTTTTGATTTCTCTAGTTGACTTTTGGTCTTTTTGATTGAACGTTGCTAAAAATATGTTGAAATTTGTAATTCTCGATTGTATGACTGTATC

Coding sequence (CDS)

ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGA

Protein sequence

MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

Homology

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: KAG7020175.1 (hypothetical protein SDJN02_16858, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQE 60
          MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQE
Sbjct: 1  MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQE 60

Query: 61 NAINSEPEGNELPSHWMML 80
          NAINSEPEGNELPSHWMML
Sbjct: 61 NAINSEPEGNELPSHWMML 79

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: KAG6585253.1 (MADS-box protein CMB1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.7 bits (369), Expect = 8.2e-32
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE
Sbjct: 206 LRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 265

Query: 67  PEGNELPSHWMML 80
           PEGNELPSHWMML
Sbjct: 266 PEGNELPSHWMML 278

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: XP_023538103.1 (truncated transcription factor CAULIFLOWER A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.7 bits (369), Expect = 8.2e-32
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELPSHWMML
Sbjct: 227 PEGNELPSHWMML 239

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: XP_022951685.1 (truncated transcription factor CAULIFLOWER A [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSA LHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAGLHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELPSHWMML
Sbjct: 227 PEGNELPSHWMML 239

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: XP_023002153.1 (truncated transcription factor CAULIFLOWER A [Cucurbita maxima])

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQ NNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQSNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELP HWMML
Sbjct: 227 PEGNELPLHWMML 239

[Close]

BLAST of Carg20579 vs. ExPASy TrEMBL
Match: A0A6J1GJJ3 (truncated transcription factor CAULIFLOWER A OS=Cucurbita moschata OX=3662 GN=LOC111454432 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSA LHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAGLHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELPSHWMML
Sbjct: 227 PEGNELPSHWMML 239

[Close]

BLAST of Carg20579 vs. ExPASy TrEMBL
Match: A0A6J1KSQ8 (truncated transcription factor CAULIFLOWER A OS=Cucurbita maxima OX=3661 GN=LOC111496099 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.8e-31
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQ NNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQSNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELP HWMML
Sbjct: 227 PEGNELPLHWMML 239

[Close]

BLAST of Carg20579 vs. ExPASy TrEMBL
Match: A0A0A0KIR6 (K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G367080 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-19
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7   LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALENSYNPAEVSNQENAI 66
           L  +LEESSAA+ H+SW++SEPNNL YC QPEAFLQ NN  IALENSYNP EV+N+EN +
Sbjct: 114 LRKKLEESSAAIHHTSWDSSEPNNLQYCRQPEAFLQLNNNIIALENSYNPTEVTNEENVV 173

Query: 67  NSEPEGNELPSHWMML 80
           NS  +GN L SHWM+L
Sbjct: 174 NSGADGNGLSSHWMLL 189

[Close]

BLAST of Carg20579 vs. ExPASy TrEMBL
Match: A0A6J1BUY9 (truncated transcription factor CAULIFLOWER A OS=Momordica charantia OX=3673 GN=LOC111004957 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNI-ALENSYNPAEVSNQENAINS 66
           L  +LEES+AALH +WEAS+ ++L Y  Q E FLQ NNI ALENSY+PAEVSNQEN INS
Sbjct: 167 LRRKLEESNAALHWTWEASDQHSLQYSRQAEGFLQRNNIVALENSYHPAEVSNQENGINS 226

Query: 67  EPE---GNELPSHWMML 80
            PE    +  PSHWMML
Sbjct: 227 GPEPEAASGFPSHWMML 243

[Close]

BLAST of Carg20579 vs. ExPASy TrEMBL
Match: A0A1S4DVG4 (MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-05
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 7   LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALEN 50
           L  +LEESS A+ H+SW++SE NNL YC QPEAFLQ NN  IALEN
Sbjct: 167 LRKKLEESSGAIHHTSWDSSEANNLQYCRQPEAFLQLNNNIIALEN 212

The following BLAST results are available for this feature:

BLAST of Carg20579 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020175.1	1.5e-38	100.00	hypothetical protein SDJN02_16858, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6585253.1	8.2e-32	95.89	MADS-box protein CMB1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023538103.1	8.2e-32	95.89	truncated transcription factor CAULIFLOWER A [Cucurbita pepo subsp. pepo]	[more]
XP_022951685.1	2.4e-31	94.52	truncated transcription factor CAULIFLOWER A [Cucurbita moschata]	[more]
XP_023002153.1	2.0e-30	93.15	truncated transcription factor CAULIFLOWER A [Cucurbita maxima]	[more]

BLAST of Carg20579 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJJ3	1.2e-31	94.52	truncated transcription factor CAULIFLOWER A OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KSQ8	9.8e-31	93.15	truncated transcription factor CAULIFLOWER A OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0KIR6	5.0e-19	68.42	K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G367080 PE=4 ...	[more]
A0A6J1BUY9	2.0e-15	64.94	truncated transcription factor CAULIFLOWER A OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S4DVG4	3.2e-05	67.39	MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1	[more]

BLAST of Carg20579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20579-RA	Carg20579-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding