Carg20563 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20563
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 644999 .. 647299 (-)
RNA-Seq ExpressionCarg20563
SyntenyCarg20563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTGAAAAGTGGAACATTTTCACGCAACGGTTCGTCTGGAGATTGGCGTGGCCTTGAACAAACCCCCCAATACCCCAACCCCCCAACCCCCCAAGCCCCCAGGCCCCGCCCCTTCGATTCACCCACACAGATACCAGTAGGCACACAGCAGCGCTGTCGTCTTCTTCCTCAGCTGCCCAGGTGAGTGCGTGAGTGCGTGAGTGCGTGTGTTCGAGCAAGAAACTGGCAATCATCCGCAACTTTTTCAGTAGGTTTTTGCTTCACTTACCTTCAAATTTCAGCTGATTTCGACCATTTCTGCTGTCAGTGATCGATTCTTTTGGGGTTTTCTTGATTTTTGGCATCTGGGTTTCATTCTATTTGACTTGCAGTGTTGAGGGAAATCGTGGGTATCACTGATTTCTTTGCGTTAGCTTAGCTAGTGAGTTCATGGGTCATTTTTGTAGCCCCGTTGACGATTTAGTGGATACCCTCTTTCTAATTGCTTAGCTTCTCTGATGTTCTTGGGTTCATAAATCGTTTGAATGTTTCTTTAGATTTGAATGCTTGCTGTTCATTGTGATGGTTGGAGTAATGTTCGCGTGGATCTGTATTGTTCTTTACCTGTTCTTCTCTTACCTTCTAATATGTTACCGGAGCTGGTTTTCTTGGTTGTTCTTCCATTGGTAAACCTAAAGTTCTGTTGAGCAATGGAGTTTTTTGGCTACTTTTCAAGGATTGAGGTTAGAATCGAATTTGAAACTCGACGTATCCTAGATTTAGTGTTTGTTTTCGAGGTGCTCGGGTTTGATATTGCAGTATGTATTTGACGGTCCCGTTTGATAACCATTTGGTTTTTTAAAGTTAAGCCTACGAATAAGCTTTCACGTACGAGTTTCCTTGTTTTGTTAGCTACTTTTTACGTATTGAAAACTAAACAAAGTAGTTCGTTGTAGAGCAATGACGAGAAAGAGAATTTAAATGTTTTCTTAAGAAAGACGAAGCTCGTTGTAGTGCAATGACGAGAAAGCAAACACAATTTAAAGAACGAATGCTTATCCTTATGAACTGATTTATCTGAGCCATAGATCCAATTCACTGATAGAAACCAGGGATTGCAGATACTCTTCGAACCATCGGCATCGCTTATATGATTCCTTTACTGGCTTACACCTTACCCCGTACGCCCTCGGTTCTTTTTTTATGGTCGATTTTTTATGTTAACCATTTTGTTGTCTCATAACATGTTTCCATTGGTGGTTTTGTTTGAAAGGCTCTTTAAAAGATGCCTTAATGGACCAATTATGATTTGATGAATGAAGTCATGAATTGATGGGTTGTTATTTTCAGTTGCACGGGAAGACTGTCGATCCATTCTTATCGCGTTTCTGATTTGGGATATGTGAGAGGTCAAATGGTTGTCGTTTAGAGGAAGCTACTAAGCCAAGTGGTTCGCCGTTCGCTCGTGGGGGTTTGTTTAATGTAAGCTTCTCTTGGTATCGAGCATTACTTAGAGAACTTGAAACATAACTGTTGTGTTTTGGCTTCTTTTTTAATACATTCTTCATCTTTAGATACCCCATGCTAGGAAGAGTACAATCAAATAAACTATGTCCTAATCTTCGGTTTCTATGGTAGCTTAAGAAAATGATTTGTTATGTGAGATCCCACGTTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGAAGACCTTTCCCTAGTAGATGCATTTTAAAACTGTGAGGTTGACGGTGATACGTAACGGGTCAAAGAGGACAATTTCTGCTAGTGGCGGCCTCGGACTGTTACAAATGGTATTAGATCCAGTCACTGGACAGTATGCCACCGAGGACGCTGGCCCCTAAGGGGGATGGATTATGAGATCCCACATTGGTTGGAGAGAGGAACGAAACATTCCTTATTAGGGTGTGGAAACCTCTCTCTAGTAGACACGTTTTAGAACCATGAGGCTGATAGCGATACATAACGGGCCAAAGCAAACAATATCTGTGGTTCATGAACATTCCTTATTAGGGTGTGGAATGTACGTAATGATTTCTATTTCTATGTATACACTGATATTGAGATGCTTTTTTGCTGGAAACAAGTTGACGAAAGCTTAGAAATGCGTCGTTTTAATGGAAGACAAAACTATAATTTTGTTTTTCCTGAAAAAACGAGGGTCGGGATAGTTGTTTACAGGTTCACCAGATTCACCTGATACACCTCCACTTTTTTTGTGAGTTTCAGAGCTTGGTTCGTTCTAGGTTCGATCACAACAGGTTGCCATATCGGTTCGTCGTACAGATATAA

mRNA sequence

TCCTTGAAAAGTGGAACATTTTCACGCAACGGTTCGTCTGGAGATTGGCGTGGCCTTGAACAAACCCCCCAATACCCCAACCCCCCAACCCCCCAAGCCCCCAGGCCCCGCCCCTTCGATTCACCCACACAGATACCAGTAGGCACACAGCAGCGCTGTCGTCTTCTTCCTCAGCTGCCCAGATCCAATTCACTGATAGAAACCAGGGATTGCAGATACTCTTCGAACCATCGGCATCGCTTATATGATTCCTTTACTGGCTTACACCTTACCCCGTCAAATGGTTGTCGTTTAGAGGAAGCTACTAAGCCAAGTGGTTCGCCGTTCGCTCGTGGGGGTTTGTTTAATAGCTTGGTTCGTTCTAGGTTCGATCACAACAGGTTGCCATATCGGTTCGTCGTACAGATATAA

Coding sequence (CDS)

TCCTTGAAAAGTGGAACATTTTCACGCAACGGTTCGTCTGGAGATTGGCGTGGCCTTGAACAAACCCCCCAATACCCCAACCCCCCAACCCCCCAAGCCCCCAGGCCCCGCCCCTTCGATTCACCCACACAGATACCAGTAGGCACACAGCAGCGCTGTCGTCTTCTTCCTCAGCTGCCCAGATCCAATTCACTGATAGAAACCAGGGATTGCAGATACTCTTCGAACCATCGGCATCGCTTATATGATTCCTTTACTGGCTTACACCTTACCCCGTCAAATGGTTGTCGTTTAGAGGAAGCTACTAAGCCAAGTGGTTCGCCGTTCGCTCGTGGGGGTTTGTTTAATAGCTTGGTTCGTTCTAGGTTCGATCACAACAGGTTGCCATATCGGTTCGTCGTACAGATATAA

Protein sequence

SLKSGTFSRNGSSGDWRGLEQTPQYPNPPTPQAPRPRPFDSPTQIPVGTQQRCRLLPQLPRSNSLIETRDCRYSSNHRHRLYDSFTGLHLTPSNGCRLEEATKPSGSPFARGGLFNSLVRSRFDHNRLPYRFVVQI
Homology
[Close]
BLAST of Carg20563 vs. NCBI nr
Match: KAG7020191.1 (hypothetical protein SDJN02_16874, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.5 bits (724), Expect = 9.7e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   SLKSGTFSRNGSSGDWRGLEQTPQYPNPPTPQAPRPRPFDSPTQIPVGTQQRCRLLPQLP 60
           SLKSGTFSRNGSSGDWRGLEQTPQYPNPPTPQAPRPRPFDSPTQIPVGTQQRCRLLPQLP
Sbjct: 1   SLKSGTFSRNGSSGDWRGLEQTPQYPNPPTPQAPRPRPFDSPTQIPVGTQQRCRLLPQLP 60

Query: 61  RSNSLIETRDCRYSSNHRHRLYDSFTGLHLTPSNGCRLEEATKPSGSPFARGGLFNSLVR 120
           RSNSLIETRDCRYSSNHRHRLYDSFTGLHLTPSNGCRLEEATKPSGSPFARGGLFNSLVR
Sbjct: 61  RSNSLIETRDCRYSSNHRHRLYDSFTGLHLTPSNGCRLEEATKPSGSPFARGGLFNSLVR 120

Query: 121 SRFDHNRLPYRFVVQI 137
           SRFDHNRLPYRFVVQI
Sbjct: 121 SRFDHNRLPYRFVVQI 136

[Close]
BLAST of Carg20563 vs. NCBI nr
Match: KAG6585266.1 (hypothetical protein SDJN03_17999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 99  EEATKPSGSPFARGGLFNSLVRSRFDHN 127
           +EATKPSGSPFARGGLFNSLVRSRFDHN
Sbjct: 62  QEATKPSGSPFARGGLFNSLVRSRFDHN 89

The following BLAST results are available for this feature:
BLAST of Carg20563 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020191.19.7e-73100.00hypothetical protein SDJN02_16874, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6585266.11.0e-0596.43hypothetical protein SDJN03_17999, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg20563 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20563 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20563 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20563-RACarg20563-RAmRNA