Carg20542 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20542
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich splicing factor SC35-like
Location	Carg_Chr12: 814165 .. 818045 (-)
RNA-Seq Expression	Carg20542
Synteny	Carg20542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTGTTGGAATTTGTTCCACCAGAGACCTAGTTGAGCCCTGAATCCGCCGCTGACGCTGGTCGCCACTCTCTCCATAGCTGAAATCGATCAGTTGCAGAGAGGAATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGTATCTCCGATCCCTAATTTTCTCTTATCTTCTTTCTTTATCTTCAATCTCTTACCATTTCTCTGTTTTTCAGGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGTTTCTTTCTCCCTTTTGCGTTTAATCTTTTCTTTTGATGAATTTGAGTGCGTAATTGGTTGGTTTTGATTTCTGTTAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGGTTAGCTTCAGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTAGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATGTGAGTTTACTATAAATATTTTAAACGCTTTTGGATGTAATTTGTTACACTTCACAGCTGCACAAGAACGTGTTTCTTGATTCTTGAATTTTGGTTTGTATCAGTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGTGAGAGTTCTAGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAAATTTATATTTTCTCGAGGTAATTATCCTCGTTTACTCTGCGATTCAAACGAAAAATTTCGATGTCCCCTTCCACATAGTCATGTAGAGTGAAGGAGGTAATAATTTTTATCTGGTTGTGAATGCAATTTCTTTAGTAGAATTGGTGCATATGGTACACCTAGAATTAGCTATGTGTGTTAATCTAGTTAATGGTAAAGTTTAACACAATCATTAAGGACACAAGTTCTTGACTTCACAAAAAGTGTGGATGATTGAAACAGTCTTATGCTTGAAGAAGTATATTGAAAATCATGAATCGTTATATGAAACTACCTTAAATCTGTTACAAACGTGTATTTGGTTTAACTGATTATGACAATTTTATGGACAAGGGACGAAAGGTTATAAGGCTCGTCTTCAATTGAGTTTCTTATCATTACAGGCAGTTGATTGTGATCTCATTATTTCCAGCTGGTTATTCTACCTTCTCTTATGGATTGCAAAATATTTCAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGGTATATGAATACTTTCTTTCTTTTATTGCTTTTAAGGGATATTGTATTCAGGCGTTCTAAGGTTCGCATGGGTTCTAGTTACCATCCTTTAATTGGGTTGCAACACTTACTCTAGTAGTTGTGAAATAGGAGTATTTGAATTCTAGTTATTTACTTGCGTTTGGATGGTCATGGGGGGATGGGTGGAACCATAGAGGTGTTCTTGAGAGGGGTATGTTTGCCAAACATTACATATTTTTTAGAACATGGCTTATGAAAATCACCGTGCCTTTGAAATATTCTCCATAAGTCCATAATTCTAATAAGAGAACGAAAAATAGACCTCTTTGAAGAACACACTCAAGAGAAACAAGCAAAAGCACAGTTATTCAGCCATCTTATCCTGAACTTCCGTTTGGAAGATGGAAAAAACTGTTATCTGAAAATAGCTTTTGAACAGCTCCTCTTAACACATGCACAATCAATACACCAACAGTGATCTAGTAATACAGTGGAAAATATTCCAGAGATCGATCCATAAGGGGAAAAAAAAAAAAAGGAAAAAAACTCTCTTAGACCCAAAAAACTTAGATGTAGCAGATTTTTAGGTTATAAAAGGTTCAAATATGAATGAGACTATCTGAAATTTCCACATATTGTAAACTCGTTCCGTGCTAAGAACATGCTCCTATTTCACTTCGGTTGGTTAGATGAAAAGAAGTGAAATAATCCAGAGAAACTTGAGAAATCAACCAACATGTATTGCTGAATCAAAGGAGTTACAACATAGGGTTCACTATGTGTCAAACCAAAGATACCTAGTCATTTATGGTGGTGAAGAACAAGAACAAAACCCAACGGAGAAATTGATCATGCATGCATTGAGAGTGATTTTTGTGTGTTATCGCTATGAATTTTAGCGTTGGCAGCGCACAGTTGACTAATTCTGCTCACATATTTACAAATATCTTGTTAGAGCTTTAATATTTTATAAAGAATTTTTCCATTGTAACGTCTCACACTCCAAAATCAATGATCTAGCATTACTAAGAGTTTTATTTCAAGTTTCTTGAGCATATCCAAACGCACTTTTCATTTAATTTTCTGGACATCTCACACTGCCAAAACCATGCAAGGTCCTCATCCTTCATTCACTGCAATTCTTATAATTCTTTTCGGTCTGCACTCTAATTGGAAATGACTTTATACTGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCGCCTCAGAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGTAAGCTAGCTAATCTGCCATTCTTATTGCCAATGATTCTTTTAAAAAAAAGTGCTGGTCTGTCTAGTGATATCTATAATTTGTGCCTGCAGGAGTGATCTATAAGTGCCATAGGGATAATATATGAAAGCAAGGCATTTGATTTTAGAAATTCTTTATGCATTTTATGAACAATCATGGCATCCCAGGGGGATATTTTGCACGAGTGTATCTGCCTTTAGACTCCCAAGGACTGTTGGATGCCTAGATAGACGTGTAGGATCTTGTTCTTAATTAGTTTGAGTTATTTTTCCCTTTTTTCCCTTTAGATTTCATTTTAGTATCTGTACTATTTACATGCAAAATATGAGTCTTCCCCAGTGTTTGGTTTTGACCTCCTTAGATGTATAATGAATTGATTCTTCTGCCTTGTATCTTGTCTTTTTGAAACCTATTCACCACATTTTGTAGCTAATATACTTTCTAACATGGTTGGGTTTATTGATTTAGATGCTCTGTGGATGAATTTGCTCATTGAGTGTCGTTTACAGAAATGTTTACTATGAGCAGGTACAAAGAAAAGCCCTTTGATATATCTTTTTGATAATTATTTCACTCATGGTTGAGAACTACAAGTTTAGAACTGTTAGACTGTAGTGATCTTTTACTTTAAAAGGTTTTAAACTATCCTCGAACCTTCTCCAACATGTAGAACTTGAAATGTAACAGTCCAAGCTCATCGCCTGCAGATATTGCCCGCTTTGAGGTTTCCTTTTTAGGCTTCCCTTCGAGGTTTTTAAATGCGTCTGCTAGAGAGAGTCACACCCTTACAGAGAGAGTCACACCCTTATAAAGAATGCTTTGCTCTCCTTTTCAACCGGTGTGTGATCCACCCCCTTTCGAGGCTAGCGTCCTTGTTGTCTCTTGTTCCTTTCTCC

mRNA sequence

AAAATTGTTGGAATTTGTTCCACCAGAGACCTAGTTGAGCCCTGAATCCGCCGCTGACGCTGGTCGCCACTCTCTCCATAGCTGAAATCGATCAGTTGCAGAGAGGAATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTAGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCGCCTCAGAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGATCTATAAGTGCCATAGGGATAATATATGAAAGCAAGGCATTTGATTTTAGAAATTCTTTATGCATTTTATGAACAATCATGGCATCCCAGGGGGATATTTTGCACGAGTGTATCTGCCTTTAGACTCCCAAGGACTGTTGGATGCCTAGATAGACGTGTAGGATCTTGTTCTTAATTAGTTTGAGTTATTTTTCCCTTTTTTCCCTTTAGATTTCATTTTAGTATCTGTACTATTTACATGCAAAATATGAGTCTTCCCCAGTGTTTGGTTTTGACCTCCTTAGATGTATAATGAATTGATTCTTCTGCCTTGTATCTTGTCTTTTTGAAACCTATTCACCACATTTTGTAGCTAATATACTTTCTAACATGGTTGGGTTTATTGATTTAGATGCTCTGTGGATGAATTTGCTCATTGAGTGTCGTTTACAGAAATGTTTACTATGAGCAGGTACAAAGAAAAGCCCTTTGATATATCTTTTTGATAATTATTTCACTCATGGTTGAGAACTACAAGTTTAGAACTGTTAGACTGTAGTGATCTTTTACTTTAAAAGGTTTTAAACTATCCTCGAACCTTCTCCAACATGTAGAACTTGAAATGTAACAGTCCAAGCTCATCGCCTGCAGATATTGCCCGCTTTGAGGTTTCCTTTTTAGGCTTCCCTTCGAGGTTTTTAAATGCGTCTGCTAGAGAGAGTCACACCCTTACAGAGAGAGTCACACCCTTATAAACGTCCTTGTTGTCTCTTGTTCCTTTCTCC

Coding sequence (CDS)

ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTAGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCGCCTCAGAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGA

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

Homology

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BLAST of Carg20542 vs. NCBI nr
Match: KAG7020212.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 526.2 bits (1354), Expect = 1.8e-145
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 283
           PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Sbjct: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 282

[Close]

BLAST of Carg20542 vs. NCBI nr
Match: XP_022952013.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 436.4 bits (1121), Expect = 1.9e-118
Identity = 246/282 (87.23%), Postives = 248/282 (87.94%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERERHRSRSRSASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 283
           PRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDADE
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVNSRSPSPAKSDADE 250

[Close]

BLAST of Carg20542 vs. NCBI nr
Match: XP_023002672.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 436.0 bits (1120), Expect = 2.4e-118
Identity = 245/282 (86.88%), Postives = 247/282 (87.59%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERE HRSRSRSASPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSEREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 283
           PRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 250

[Close]

BLAST of Carg20542 vs. NCBI nr
Match: XP_022952012.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 434.9 bits (1117), Expect = 5.4e-118
Identity = 245/281 (87.19%), Postives = 247/281 (87.90%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERERHRSRSRSASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 282
           PRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDAD
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVNSRSPSPAKSDAD 249

[Close]

BLAST of Carg20542 vs. NCBI nr
Match: XP_023002671.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 434.5 bits (1116), Expect = 7.0e-118
Identity = 244/281 (86.83%), Postives = 246/281 (87.54%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERE HRSRSRSASPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSEREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 282
           PRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 249

[Close]

BLAST of Carg20542 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.7e-56
Identity = 164/309 (53.07%), Postives = 189/309 (61.17%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKY DEA KA+++LD                                GR++DGREI 
Sbjct: 61  FVRYKYKDEAHKAVERLD--------------------------------GRVVDGREIT 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPR 180
           VQFAKYGPNAEKI KG+V+E      R RS                      RSRSPR R
Sbjct: 121 VQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRR 180

Query: 181 HRDDYRDRDYRRRSHSRSRERYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERR 240
            RDDYR++DYR+RS SRS +R  R+R    +R+ R R+RSRSASPD  +  R   D+E R
Sbjct: 181 SRDDYREKDYRKRSRSRSYDR--RERHEEKDRDHRRRTRSRSASPDEKRRVRGRYDNESR 240

Query: 241 SASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP 283
           S SRS  S SP R SP   RS SP++T PAR  S D+ S +R      SL  +    +  
Sbjct: 241 SHSRS-LSASPARRSP---RSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKA 271

[Close]

BLAST of Carg20542 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-21
Identity = 104/263 (39.54%), Postives = 134/263 (50.95%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQF 123
           +    +A+ A+D +D                                G +LDGRE+ VQ 
Sbjct: 63  FHDKRDAEDAMDAMD--------------------------------GAVLDGRELRVQM 122

Query: 124 AKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYD 183
           A+YG  P++   R+G       S   GR RSRSPR R R   R R    RS SRSR RY 
Sbjct: 123 ARYGRPPDSHHSRRGPPPRRYGSSGYGR-RSRSPRRRRRSRSRSRS---RSRSRSRSRYS 182

Query: 184 RDRPHRSERERHRSRSRSASPDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSIS 243
           R +     R R RSRSRS S  R+  R + +     RS SRS RS S +R  P T    S
Sbjct: 183 RSK----SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPPPT----S 219

Query: 244 PRRTPARGRSDDEHSPQRENGSL 264
            R + +R RS        E G++
Sbjct: 243 KRESNSRSRSKSPPKSPEEEGAV 219

[Close]

BLAST of Carg20542 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-20
Identity = 102/263 (38.78%), Postives = 133/263 (50.57%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQF 123
           +    +A+ A+D +D                                G +LDGRE+ VQ 
Sbjct: 63  FHDKRDAEDAMDAMD--------------------------------GAVLDGRELRVQM 122

Query: 124 AKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYD 183
           A+YG  P++   R+G           GR RSRSPR R R   R R    RS SRSR RY 
Sbjct: 123 ARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSRSPRRRRRSRSRSRS---RSRSRSRSRYS 182

Query: 184 RDRPHRSERERHRSRSRSASPDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSIS 243
           R +     R R RSRSRS S  R+  R + +     RS SRS RS S +R  P     +S
Sbjct: 183 RSK----SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPP----PVS 219

Query: 244 PRRTPARGRSDDEHSPQRENGSL 264
            R + +R RS        E G++
Sbjct: 243 KRESKSRSRSKSPPKSPEEEGAV 219

[Close]

BLAST of Carg20542 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-20
Identity = 102/263 (38.78%), Postives = 133/263 (50.57%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQF 123
           +    +A+ A+D +D                                G +LDGRE+ VQ 
Sbjct: 63  FHDKRDAEDAMDAMD--------------------------------GAVLDGRELRVQM 122

Query: 124 AKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYD 183
           A+YG  P++   R+G           GR RSRSPR R R   R R    RS SRSR RY 
Sbjct: 123 ARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSRSPRRRRRSRSRSRS---RSRSRSRSRYS 182

Query: 184 RDRPHRSERERHRSRSRSASPDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSIS 243
           R +     R R RSRSRS S  R+  R + +     RS SRS RS S +R  P     +S
Sbjct: 183 RSK----SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPP----PVS 219

Query: 244 PRRTPARGRSDDEHSPQRENGSL 264
            R + +R RS        E G++
Sbjct: 243 KRESKSRSRSKSPPKSPEEEGAV 219

[Close]

BLAST of Carg20542 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-20
Identity = 102/263 (38.78%), Postives = 133/263 (50.57%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQF 123
           +    +A+ A+D +D                                G +LDGRE+ VQ 
Sbjct: 63  FHDKRDAEDAMDAMD--------------------------------GAVLDGRELRVQM 122

Query: 124 AKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYD 183
           A+YG  P++   R+G           GR RSRSPR R R   R R    RS SRSR RY 
Sbjct: 123 ARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSRSPRRRRRSRSRSRS---RSRSRSRSRYS 182

Query: 184 RDRPHRSERERHRSRSRSASPDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSIS 243
           R +     R R RSRSRS S  R+  R + +     RS SRS RS S +R  P     +S
Sbjct: 183 RSK----SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRS-RSRSRSRSPP----PVS 219

Query: 244 PRRTPARGRSDDEHSPQRENGSL 264
            R + +R RS        E G++
Sbjct: 243 KRESKSRSRSKSPPKSPEEEGAV 219

[Close]

BLAST of Carg20542 vs. ExPASy TrEMBL
Match: A0A6J1GJA8 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 9.0e-119
Identity = 246/282 (87.23%), Postives = 248/282 (87.94%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERERHRSRSRSASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 283
           PRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDADE
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVNSRSPSPAKSDADE 250

[Close]

BLAST of Carg20542 vs. ExPASy TrEMBL
Match: A0A6J1KK62 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.2e-118
Identity = 245/282 (86.88%), Postives = 247/282 (87.59%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERE HRSRSRSASPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSEREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 283
           PRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 250

[Close]

BLAST of Carg20542 vs. ExPASy TrEMBL
Match: A0A6J1GJ79 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.6e-118
Identity = 245/281 (87.19%), Postives = 247/281 (87.90%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERERHRSRSRSASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 282
           PRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDAD
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVNSRSPSPAKSDAD 249

[Close]

BLAST of Carg20542 vs. ExPASy TrEMBL
Match: A0A6J1KLY6 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.4e-118
Identity = 244/281 (86.83%), Postives = 246/281 (87.54%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERY
Sbjct: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERY 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSIS 240
           DRDRPHRSERE HRSRSRSASPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSIS
Sbjct: 181 DRDRPHRSEREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSIS 240

Query: 241 PRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 282
           PRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
Sbjct: 241 PRRTPSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 249

[Close]

BLAST of Carg20542 vs. ExPASy TrEMBL
Match: A0A6J1K6Z8 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492207 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.1e-108
Identity = 236/284 (83.10%), Postives = 242/284 (85.21%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKYADEAQKAIDKLD                                GRMLDGREIM
Sbjct: 61  FVRYKYADEAQKAIDKLD--------------------------------GRMLDGREIM 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERY 180
           VQFAKYGPNAEKIRKGKVME SSSK RGRSRSRSPRPRHRDDYRDRDYRRRS SRSRER+
Sbjct: 121 VQFAKYGPNAEKIRKGKVME-SSSKARGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERH 180

Query: 181 DRDRPHRSERERHRSRSRSASPDRNKDRRRERDD-ERRSASRSDRSMSPTRHSPDTRRSI 240
           DRDRPHRSERER+RSRSRSASPDR KDRRR RDD ERRSAS SDRSMSP RHSPDTRRSI
Sbjct: 181 DRDRPHRSERERYRSRSRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSI 240

Query: 241 SPRRT-PARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 283
           SPRRT P+RGRSD+EHSP+R+NGS DDKPVDSRSPSPAKSDADE
Sbjct: 241 SPRRTPPSRGRSDEEHSPRRDNGSPDDKPVDSRSPSPAKSDADE 251

[Close]

BLAST of Carg20542 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-57
Identity = 164/309 (53.07%), Postives = 189/309 (61.17%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKY DEA KA+++LD                                GR++DGREI 
Sbjct: 61  FVRYKYKDEAHKAVERLD--------------------------------GRVVDGREIT 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPR 180
           VQFAKYGPNAEKI KG+V+E      R RS                      RSRSPR R
Sbjct: 121 VQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRR 180

Query: 181 HRDDYRDRDYRRRSHSRSRERYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERR 240
            RDDYR++DYR+RS SRS +R  R+R    +R+ R R+RSRSASPD  +  R   D+E R
Sbjct: 181 SRDDYREKDYRKRSRSRSYDR--RERHEEKDRDHRRRTRSRSASPDEKRRVRGRYDNESR 240

Query: 241 SASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP 283
           S SRS  S SP R SP   RS SP++T PAR  S D+ S +R      SL  +    +  
Sbjct: 241 SHSRS-LSASPARRSP---RSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKA 271

[Close]

BLAST of Carg20542 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-57
Identity = 164/309 (53.07%), Postives = 189/309 (61.17%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIM 120
           FVRYKY DEA KA+++LD                                GR++DGREI 
Sbjct: 61  FVRYKYKDEAHKAVERLD--------------------------------GRVVDGREIT 120

Query: 121 VQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPR 180
           VQFAKYGPNAEKI KG+V+E      R RS                      RSRSPR R
Sbjct: 121 VQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRR 180

Query: 181 HRDDYRDRDYRRRSHSRSRERYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERR 240
            RDDYR++DYR+RS SRS +R  R+R    +R+ R R+RSRSASPD  +  R   D+E R
Sbjct: 181 SRDDYREKDYRKRSRSRSYDR--RERHEEKDRDHRRRTRSRSASPDEKRRVRGRYDNESR 240

Query: 241 SASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP 283
           S SRS  S SP R SP   RS SP++T PAR  S D+ S +R      SL  +    +  
Sbjct: 241 SHSRS-LSASPARRSP---RSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKA 271

[Close]

BLAST of Carg20542 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-10
Identity = 100/284 (35.21%), Postives = 127/284 (44.72%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADA--- 96

Query: 77  LDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKG 136
                K+H+                         G +L GRE+ V FA+   N +K  + 
Sbjct: 97  -----KHHMD------------------------GYLLLGRELTVVFAE--ENRKKPTEM 156

Query: 137 KVMESSSSKTRGR--------SRSRSPRPRH-RDDYRDRDY----RRRSHSRS----RER 196
           +  E    + R R        SRSRSP PR  R   R  DY     RR H RS     ER
Sbjct: 157 RARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREER 216

Query: 197 YDRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSD-RSMSPTRHSPDTRRS 256
           YD  R +        SR RS +P R K R       RRS SRS  RS SP   SP   RS
Sbjct: 217 YDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS-PSPRRSISRSPRRSRSP---SPKRNRS 276

Query: 257 ISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 283
           +SPRR+ +R       SP+R   S   +P  SRS SP     DE
Sbjct: 277 VSPRRSISRS-PRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDE 281

[Close]

BLAST of Carg20542 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-07
Identity = 95/291 (32.65%), Postives = 129/291 (44.33%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQF 123
           +    +A +A  ++D                                G +L GRE+ V F
Sbjct: 87  FMDPADAAEAKHQMD--------------------------------GYLLLGRELTVVF 146

Query: 124 AKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRD 183
           A+   N +K  + +  +      R + R RSP PR+    R    RR   SRSR R    
Sbjct: 147 AE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP-PRYS---RSPPPRRGRRSRSRSRGYNS 206

Query: 184 RPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSD-------RSMSPTR---HSP 243
            P +      R +SRS SP   +DRR E++   RS SRS        RS SP R   HS 
Sbjct: 207 PPAK------RHQSRSVSP---QDRRYEKE---RSYSRSPPHNGSRVRSGSPGRVKSHSR 253

Query: 244 DTRRSISPRR----TPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDA 281
             RRS+SPR+    TP + RS    SP          P  SRSP+P    A
Sbjct: 267 SPRRSVSPRKNRSYTPEQARS---QSP---------VPRQSRSPTPVPRGA 253

[Close]

BLAST of Carg20542 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 45.8 bits (107), Expect = 6.6e-05
Identity = 64/234 (27.35%), Postives = 99/234 (42.31%), Query Frame = 0


Query: 18  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 77
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGK 137
                NH                           +++ GREI + F      AE+ RK  
Sbjct: 109 -----NH---------------------------KVIGGREIAIVF------AEENRKTP 168

Query: 138 VMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRS 197
               +++ T G               R  DY+R SH   R RY      RS   R    S
Sbjct: 169 QEMRTTNGTSG---------------RHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHS 228

Query: 198 RSASPDRNKDRRRERDDERRSASRSDRS-MSPTRHSPDTRRSISPRRTPARGRS 251
           +    D    RRR R   R    R++R   S    SP   R ++P R+    RS
Sbjct: 229 KVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRS 229

The following BLAST results are available for this feature:

BLAST of Carg20542 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020212.1	1.8e-145	100.00	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022952013.1	1.9e-118	87.23	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita moschata]	[more]
XP_023002672.1	2.4e-118	86.88	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima]	[more]
XP_022952012.1	5.4e-118	87.19	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata]	[more]
XP_023002671.1	7.0e-118	86.83	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg20542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	2.7e-56	53.07	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	8.3e-21	39.54	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	3.2e-20	38.78	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	3.2e-20	38.78	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	3.2e-20	38.78	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of Carg20542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJA8	9.0e-119	87.23	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1KK62	1.2e-118	86.88	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1GJ79	2.6e-118	87.19	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1KLY6	3.4e-118	86.83	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1K6Z8	1.1e-108	83.10	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]

BLAST of Carg20542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	1.9e-57	53.07	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.9e-57	53.07	ortholog of human splicing factor SC35	[more]
AT1G55310.1	6.8e-10	35.21	SC35-like splicing factor 33	[more]
AT3G13570.1	4.1e-07	32.65	SC35-like splicing factor 30A	[more]
AT5G18810.1	6.6e-05	27.35	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..88 e-value: 1.3E-17 score: 74.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..78 e-value: 9.1E-17 score: 60.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..126 score: 16.414856
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..142 e-value: 1.4E-22 score: 82.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..282
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..279
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..279
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20542-RA	Carg20542-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding