Carg20541 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20541
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	WW domain-containing protein
Location	Carg_Chr12: 822715 .. 823418 (+)
RNA-Seq Expression	Carg20541
Synteny	Carg20541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAGCCATGGTTCCCTTTCAATCCCACCCTTCTTCTCTAAATGACAAGAGATCAGAAGTTCGAGAGTCTTCCGAGAATTTAGCAAAGAAGAGGAAGTGGGAACAACCGTTGCAACCGCCACAGATCAATTCCATATTCGATATCGAGCTTCACCTCGAAACTCCGTTACCGTTCGATTGGCAACGATGTCTTGACATTCAGGTGTTGCTATATATACAATTTTCTTTTCAACATCGTTTATCTTATGTAAATTTATCATAATCTATTAGTTTAAGCTTTCGAACCTACTGGGTTATTGATACTAATTCTTTTTTAGTCGGGGAAGATACATTTCTATAACACGACGACTCAGAAGAGAACGTCGAAGGATCCAAGAGACAAGCTTGATATAGACGATGACGTCGAGGGAGACGAAAGCGACGAGGACATGAGTTTGGACCTCGAGCTCAACTTGACATGCGAATCGCTCGACAAGAACAACAGTCAAACAACACAAGGAGGGCGGCGAGCCATAGGTGGAATGTTCGGCTCGTCGGAAAATTACAAGCAGCAAACGGAGATGGTGGCCGCCGTTTGCATGAGGTGTCACTTGTTAGTGATGATGTGTAAATCTTCGCCGGAGTGTCCTAACTGCAAATTCATAAACTCGCCGGAGCAGACCTCGCCGGCGATGCTAAAACGCCGGTGTTACCTTTCTTGGTAA

mRNA sequence

TAGAGCCATGGTTCCCTTTCAATCCCACCCTTCTTCTCTAAATGACAAGAGATCAGAAGTTCGAGAGTCTTCCGAGAATTTAGCAAAGAAGAGGAAGTGGGAACAACCGTTGCAACCGCCACAGATCAATTCCATATTCGATATCGAGCTTCACCTCGAAACTCCGTTACCGTTCGATTGGCAACGATGTCTTGACATTCAGTCGGGGAAGATACATTTCTATAACACGACGACTCAGAAGAGAACGTCGAAGGATCCAAGAGACAAGCTTGATATAGACGATGACGTCGAGGGAGACGAAAGCGACGAGGACATGAGTTTGGACCTCGAGCTCAACTTGACATGCGAATCGCTCGACAAGAACAACAGTCAAACAACACAAGGAGGGCGGCGAGCCATAGGTGGAATGTTCGGCTCGTCGGAAAATTACAAGCAGCAAACGGAGATGGTGGCCGCCGTTTGCATGAGGTGTCACTTGTTAGTGATGATGTGTAAATCTTCGCCGGAGTGTCCTAACTGCAAATTCATAAACTCGCCGGAGCAGACCTCGCCGGCGATGCTAAAACGCCGGTGTTACCTTTCTTGGTAA

Coding sequence (CDS)

ATGGTTCCCTTTCAATCCCACCCTTCTTCTCTAAATGACAAGAGATCAGAAGTTCGAGAGTCTTCCGAGAATTTAGCAAAGAAGAGGAAGTGGGAACAACCGTTGCAACCGCCACAGATCAATTCCATATTCGATATCGAGCTTCACCTCGAAACTCCGTTACCGTTCGATTGGCAACGATGTCTTGACATTCAGTCGGGGAAGATACATTTCTATAACACGACGACTCAGAAGAGAACGTCGAAGGATCCAAGAGACAAGCTTGATATAGACGATGACGTCGAGGGAGACGAAAGCGACGAGGACATGAGTTTGGACCTCGAGCTCAACTTGACATGCGAATCGCTCGACAAGAACAACAGTCAAACAACACAAGGAGGGCGGCGAGCCATAGGTGGAATGTTCGGCTCGTCGGAAAATTACAAGCAGCAAACGGAGATGGTGGCCGCCGTTTGCATGAGGTGTCACTTGTTAGTGATGATGTGTAAATCTTCGCCGGAGTGTCCTAACTGCAAATTCATAAACTCGCCGGAGCAGACCTCGCCGGCGATGCTAAAACGCCGGTGTTACCTTTCTTGGTAA

Protein sequence

MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNNSQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQTSPAMLKRRCYLSW

Homology

[Close]

BLAST of Carg20541 vs. NCBI nr
Match: KAG6585292.1 (hypothetical protein SDJN03_18025, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020213.1 hypothetical protein SDJN02_16896 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 395.6 bits (1015), Expect = 2.5e-106
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60
           MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR
Sbjct: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60

Query: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN 120
           CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN
Sbjct: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN 120

Query: 121 SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180
           SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT
Sbjct: 121 SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180

Query: 181 SPAMLKRRCYLSW 194
           SPAMLKRRCYLSW
Sbjct: 181 SPAMLKRRCYLSW 193

[Close]

BLAST of Carg20541 vs. NCBI nr
Match: XP_023538128.1 (uncharacterized protein LOC111798987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 390.6 bits (1002), Expect = 8.0e-105
Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60
           MVPFQSHPSS NDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR
Sbjct: 1   MVPFQSHPSSQNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60

Query: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN 120
           CLDIQSG+IHFYNTTTQKRTSKDPRDKLDIDDD+EGDESDEDMSLDLELNLTCESLDKNN
Sbjct: 61  CLDIQSGRIHFYNTTTQKRTSKDPRDKLDIDDDIEGDESDEDMSLDLELNLTCESLDKNN 120

Query: 121 SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180
           +QTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT
Sbjct: 121 NQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180

Query: 181 SPAMLKRRCYLSW 194
           SPAMLKRRCYLSW
Sbjct: 181 SPAMLKRRCYLSW 193

[Close]

BLAST of Carg20541 vs. NCBI nr
Match: XP_023002678.1 (uncharacterized protein LOC111496462 [Cucurbita maxima])

HSP 1 Score: 389.4 bits (999), Expect = 1.8e-104
Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60
           MVPFQSHPSSLNDKRSEVR+ SENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR
Sbjct: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60

Query: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN 120
           CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDES+EDMSLDLELNLTCESLDKNN
Sbjct: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLELNLTCESLDKNN 120

Query: 121 SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180
           +QTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT
Sbjct: 121 NQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180

Query: 181 SPAMLKRRCYLSW 194
           SPAMLKRRCYLSW
Sbjct: 181 SPAMLKRRCYLSW 193

[Close]

BLAST of Carg20541 vs. NCBI nr
Match: XP_022952019.1 (uncharacterized protein LOC111454730 [Cucurbita moschata])

HSP 1 Score: 383.6 bits (984), Expect = 9.7e-103
Identity = 187/193 (96.89%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60
           MVPFQS PSSLNDKR EVR SSENLAKKRKWEQPLQPPQINSIFD+ELHLETPLPFDWQR
Sbjct: 1   MVPFQSPPSSLNDKRLEVRGSSENLAKKRKWEQPLQPPQINSIFDVELHLETPLPFDWQR 60

Query: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN 120
           CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCES DKNN
Sbjct: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESFDKNN 120

Query: 121 SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180
           +QTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT
Sbjct: 121 NQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180

Query: 181 SPAMLKRRCYLSW 194
           SPAMLKRRCYLSW
Sbjct: 181 SPAMLKRRCYLSW 193

[Close]

BLAST of Carg20541 vs. NCBI nr
Match: XP_038885611.1 (sodium/hydrogen exchanger 1-like [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 1.6e-76
Identity = 154/204 (75.49%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60
           MVPFQ HPSSLNDK S ++E+++NLAKKRKWE+      +NS+FDIELHLETPLPF WQR
Sbjct: 1   MVPFQPHPSSLNDKTSAIQETADNLAKKRKWEESFPTTPLNSVFDIELHLETPLPFYWQR 60

Query: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDE--DMSLDLELNLTCESLDK 120
           CLDIQSGKIHFYNTTTQKRT KDPRDKL+ DD+ E D++DE  DMSLDLELNLTCESLDK
Sbjct: 61  CLDIQSGKIHFYNTTTQKRTWKDPRDKLEKDDNHEDDDNDEDNDMSLDLELNLTCESLDK 120

Query: 121 -NNSQTTQGGRRAI--GGMFGSSENY----KQQTEMVAAVCMRCHLLVMMCKSSPECPNC 180
            NN+Q  QGGR+AI  G +FGSSENY      + EMVAAVCMRCHLLVMMCKSSPECPNC
Sbjct: 121 NNNNQAIQGGRQAINNGMIFGSSENYNNNNNNKAEMVAAVCMRCHLLVMMCKSSPECPNC 180

Query: 181 KFINS--PEQTSPAMLKRRCYLSW 194
           KF+NS  PEQTSPAM KRRC+LSW
Sbjct: 181 KFMNSPPPEQTSPAMFKRRCHLSW 204

[Close]

BLAST of Carg20541 vs. ExPASy TrEMBL
Match: A0A6J1KU99 (uncharacterized protein LOC111496462 OS=Cucurbita maxima OX=3661 GN=LOC111496462 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 8.6e-105
Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60
           MVPFQSHPSSLNDKRSEVR+ SENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR
Sbjct: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60

Query: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN 120
           CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDES+EDMSLDLELNLTCESLDKNN
Sbjct: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLELNLTCESLDKNN 120

Query: 121 SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180
           +QTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT
Sbjct: 121 NQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180

Query: 181 SPAMLKRRCYLSW 194
           SPAMLKRRCYLSW
Sbjct: 181 SPAMLKRRCYLSW 193

[Close]

BLAST of Carg20541 vs. ExPASy TrEMBL
Match: A0A6J1GKF5 (uncharacterized protein LOC111454730 OS=Cucurbita moschata OX=3662 GN=LOC111454730 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.7e-103
Identity = 187/193 (96.89%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQR 60
           MVPFQS PSSLNDKR EVR SSENLAKKRKWEQPLQPPQINSIFD+ELHLETPLPFDWQR
Sbjct: 1   MVPFQSPPSSLNDKRLEVRGSSENLAKKRKWEQPLQPPQINSIFDVELHLETPLPFDWQR 60

Query: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNN 120
           CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCES DKNN
Sbjct: 61  CLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESFDKNN 120

Query: 121 SQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180
           +QTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT
Sbjct: 121 NQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQT 180

Query: 181 SPAMLKRRCYLSW 194
           SPAMLKRRCYLSW
Sbjct: 181 SPAMLKRRCYLSW 193

[Close]

BLAST of Carg20541 vs. ExPASy TrEMBL
Match: A0A6J1BS22 (uncharacterized protein LOC111005038 OS=Momordica charantia OX=3673 GN=LOC111005038 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.3e-73
Identity = 145/191 (75.92%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWE---QPLQPPQINSIFDIELHLETPLPFD 60
           MVPFQ  PSSLNDKR  +R+ ++ LAKKRKWE    P  PP  NSIFDIELHLETPLP D
Sbjct: 1   MVPFQPLPSSLNDKRVAIRDPTDPLAKKRKWEAQLPPPPPPPQNSIFDIELHLETPLPSD 60

Query: 61  WQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLD 120
           WQRCLDIQSGKIHFYNTTT KRTSKDPRD++D +DD E  E D+DMSLDLELNLTC+SLD
Sbjct: 61  WQRCLDIQSGKIHFYNTTTNKRTSKDPRDQIDKNDDEE--EDDDDMSLDLELNLTCDSLD 120

Query: 121 KNNSQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSP 180
           KN++Q TQGGR+ + G+FGSSENY  + EMVAAVCMRCHLLVM+CKSSPECPNCKF+NSP
Sbjct: 121 KNSNQ-TQGGRQDLNGLFGSSENYSNRKEMVAAVCMRCHLLVMLCKSSPECPNCKFMNSP 180

Query: 181 EQTSPAMLKRR 189
           E T PAMLKRR
Sbjct: 181 EHTPPAMLKRR 188

[Close]

BLAST of Carg20541 vs. ExPASy TrEMBL
Match: A0A5A7VAF4 (WW domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004890 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.3e-73
Identity = 153/211 (72.51%), Postives = 171/211 (81.04%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPL--QPPQINSIFDIELHLETPLPFDW 60
           MVPFQSHPSSLNDK S ++E ++NLAKKRKWE+ +   PP +NS+ DIELHLETPLPF W
Sbjct: 1   MVPFQSHPSSLNDKTSAIQEPADNLAKKRKWEESMVPTPPPLNSVLDIELHLETPLPFYW 60

Query: 61  QRCLDIQSGKIHFYNTTTQKRTSKDPRDKL----DIDDDVEGDESD----EDMSLDLELN 120
           QRCLDIQSGKIHFYN TTQKRT +DPRDKL    D DDD EG + D     DMSLDLELN
Sbjct: 61  QRCLDIQSGKIHFYNMTTQKRTWRDPRDKLVDKDDDDDDEEGKDDDCYDKNDMSLDLELN 120

Query: 121 LTCESLDK-NNSQTTQGGRRAI--GGMFGSSENY----KQQTEMVAAVCMRCHLLVMMCK 180
           LTCES+DK NN+QT QG RRAI  G +FG SENY     ++ EMVAAVCMRCHLLVM+CK
Sbjct: 121 LTCESMDKNNNNQTVQGVRRAINNGMVFGLSENYNNNNNKKAEMVAAVCMRCHLLVMLCK 180

Query: 181 SSPECPNCKFINS-PEQTSPAMLKRRCYLSW 194
           SSPECPNCKF+NS PEQTSPAM KRRC+LSW
Sbjct: 181 SSPECPNCKFMNSPPEQTSPAMSKRRCHLSW 211

[Close]

BLAST of Carg20541 vs. ExPASy TrEMBL
Match: A0A1S3BAS4 (uncharacterized protein LOC103488058 OS=Cucumis melo OX=3656 GN=LOC103488058 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.3e-73
Identity = 153/211 (72.51%), Postives = 171/211 (81.04%), Query Frame = 0


Query: 1   MVPFQSHPSSLNDKRSEVRESSENLAKKRKWEQPL--QPPQINSIFDIELHLETPLPFDW 60
           MVPFQSHPSSLNDK S ++E ++NLAKKRKWE+ +   PP +NS+ DIELHLETPLPF W
Sbjct: 1   MVPFQSHPSSLNDKTSAIQEPADNLAKKRKWEESMVPTPPPLNSVLDIELHLETPLPFYW 60

Query: 61  QRCLDIQSGKIHFYNTTTQKRTSKDPRDKL----DIDDDVEGDESD----EDMSLDLELN 120
           QRCLDIQSGKIHFYN TTQKRT +DPRDKL    D DDD EG + D     DMSLDLELN
Sbjct: 61  QRCLDIQSGKIHFYNMTTQKRTWRDPRDKLVDKDDDDDDEEGKDDDCYDKNDMSLDLELN 120

Query: 121 LTCESLDK-NNSQTTQGGRRAI--GGMFGSSENY----KQQTEMVAAVCMRCHLLVMMCK 180
           LTCES+DK NN+QT QG RRAI  G +FG SENY     ++ EMVAAVCMRCHLLVM+CK
Sbjct: 121 LTCESMDKNNNNQTVQGVRRAINNGMVFGLSENYNNNNNKKAEMVAAVCMRCHLLVMLCK 180

Query: 181 SSPECPNCKFINS-PEQTSPAMLKRRCYLSW 194
           SSPECPNCKF+NS PEQTSPAM KRRC+LSW
Sbjct: 181 SSPECPNCKFMNSPPEQTSPAMSKRRCHLSW 211

[Close]

BLAST of Carg20541 vs. TAIR 10
Match: AT1G78170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-12
Identity = 63/189 (33.33%), Postives = 83/189 (43.92%), Query Frame = 0


Query: 32  EQPLQPPQINSIFDIELHLETPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDID 91
           E+P      +  FD ELHL TPLP DWQ              T    RTS + R     D
Sbjct: 43  ERPKSESMRSITFDFELHLHTPLPSDWQ--------------TKGYSRTSDEHR-AYPKD 102

Query: 92  DDVEGDESDEDMSLDLELNLT------------CESLDKNNSQT--------TQGGRRAI 151
             + G      MSLDLELNL+             ES   +N           T   +++I
Sbjct: 103 PVIFGQPK---MSLDLELNLSPSGSPSRTTTKKYESSSIHNETVSSSKIKVLTNTSKKSI 162

Query: 152 GG-----------MFGSSEN---YKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSP 187
            G             G  +N   +K Q EMV  VCM+CH+LVM+C S+P CPNCKF++  
Sbjct: 163 IGTGLSRSPSWLAFEGGDDNDVDHKGQ-EMVTTVCMKCHMLVMLCTSTPVCPNCKFMHPH 212

[Close]

BLAST of Carg20541 vs. TAIR 10
Match: AT4G08910.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-11
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 0


Query: 86  DKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNNSQTTQGGRRAI------------GG 145
           D  ++++++E   +   MSLDLELNL+   +D N+        +              G 
Sbjct: 70  DSKNMNNNIEEGYNHHHMSLDLELNLSPSLIDLNHHHDLSNYNKGYEEDERKKKMMEKGS 129

Query: 146 MF----------------------GSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNC 186
           +                       G     + + EMVA VCM+CH+LVM+CK+SP CPNC
Sbjct: 130 VLGLETKKSMSRVAFDLDDDCCDRGDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNC 189

[Close]

BLAST of Carg20541 vs. TAIR 10
Match: AT1G22250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 3.1e-06
Identity = 36/119 (30.25%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 76  TQKRTSKDPRDKLDIDDDVEGDESDEDMSLDLELNLTCESLDKNNSQTTQGGRRAIGGMF 135
           TQ  T +D R  LD++ ++    S       +E     +   K  +      ++   G  
Sbjct: 73  TQSETFEDHRTDLDLNLNLYSSSSSSVKKTIMEK----DECSKGGTVIISPSKKVRSGDI 132

Query: 136 GSS-------------ENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQTS 182
           G S             +N K+Q EM+  VCM+CH+LVM+CKS+  CPNCKF++  + +S
Sbjct: 133 GLSRSPSWLAFEGDDDDNQKKQ-EMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSS 186

[Close]

BLAST of Carg20541 vs. TAIR 10
Match: AT2G33510.1 (CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 6.9e-06
Identity = 43/167 (25.75%), Postives = 71/167 (42.51%), Query Frame = 0


Query: 10  SLNDKRSEVRESSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQRCLDIQSGKI 69
           SLND+R  V       +   +   P+      S   +EL+    LP  W++CLD+++G+I
Sbjct: 21  SLNDRRRRVVGDGFGRSSSNEHMTPI------SDRTLELNSHLSLPCHWEQCLDLKTGEI 80

Query: 70  HFYNTTTQKRTSKDPRDKLDIDDDVEGDE-----SDEDMSLDLELNLTCESLDKNNSQTT 129
           ++ N     R  +DPR  ++ D D  GD      S+ED S       + ES   +     
Sbjct: 81  YYINWKNGMRVKEDPRKVMNADPD-SGDSYGTVCSEEDSSYYDSEESSSESSPSSRENHK 140

Query: 130 QGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNC 172
           +             E  +++  +V A C  C +  M+ K   +CP C
Sbjct: 141 EEEEEE------EEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKC 174

The following BLAST results are available for this feature:

BLAST of Carg20541 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585292.1	2.5e-106	100.00	hypothetical protein SDJN03_18025, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023538128.1	8.0e-105	97.93	uncharacterized protein LOC111798987 [Cucurbita pepo subsp. pepo]	[more]
XP_023002678.1	1.8e-104	97.93	uncharacterized protein LOC111496462 [Cucurbita maxima]	[more]
XP_022952019.1	9.7e-103	96.89	uncharacterized protein LOC111454730 [Cucurbita moschata]	[more]
XP_038885611.1	1.6e-76	75.49	sodium/hydrogen exchanger 1-like [Benincasa hispida]	[more]

BLAST of Carg20541 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KU99	8.6e-105	97.93	uncharacterized protein LOC111496462 OS=Cucurbita maxima OX=3661 GN=LOC111496462...	[more]
A0A6J1GKF5	4.7e-103	96.89	uncharacterized protein LOC111454730 OS=Cucurbita moschata OX=3662 GN=LOC1114547...	[more]
A0A6J1BS22	1.3e-73	75.92	uncharacterized protein LOC111005038 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7VAF4	2.3e-73	72.51	WW domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3BAS4	2.3e-73	72.51	uncharacterized protein LOC103488058 OS=Cucumis melo OX=3656 GN=LOC103488058 PE=...	[more]

BLAST of Carg20541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78170.1	3.8e-12	33.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G08910.1	2.5e-11	32.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G22250.1	3.1e-06	30.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G33510.1	6.9e-06	25.75	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis t...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.20.70.10		coord: 49..91 e-value: 1.3E-6 score: 29.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 1..189
None	No IPR available	PANTHER	PTHR14791:SF42	F16L1.2 PROTEIN	coord: 1..189
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 52..86 score: 8.6895
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 52..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20541-RA	Carg20541-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding