Carg20537 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20537
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	methyl-CpG-binding domain-containing protein 8-like isoform X2
Location	Carg_Chr12: 855303 .. 855956 (-)
RNA-Seq Expression	Carg20537
Synteny	Carg20537

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACAACTATGGTTGCTTCCCCCTCCGACGACAGATTCCGCATGAATACTCTCCCGATCATAGATCTCCGTCTCCTCTCCCAATCCGAACTCTATTGTCTCTCTCGTTTCTCCTCCTCATCGTCGTCTTCAATCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGGAAACAAACCTATTCTCGTCTTCGTCTTGCCCCTCGCAAATCTCAGTTTCCTTCCTCATCCTCCTCCTCCACAATTCGCCCCCAATCCCCTGACCGCTTCGATGAAGAGAGCGCTGAGATTGTTACTCTCTTCAAGCAGCTCTTCGTTGGAGAGTCTCATTGTGGCGTCAATGACAGCTATGATGATGGAGATGAGGACCTGGTTCTTGTTAACCACATTTATGATGAATCGGTACCTGAATCTTCCTACGCGATTTTTCACAGTATTCCTGTTGATATCATCGATAGCAGTTACGCTCCGATTAAGCGGCGGCGAGGACGACCGCGGAAGGATAGTAATCGGTTTGCTCAGAGCAATGGAAATGCGGCTGCGAACTCCATAAGCGGATGCGATAAACGAGCGGAGGAGGATGAGATCGTAATGGTAATGCTGTGA

mRNA sequence

ATGGCTTCCACAACTATGGTTGCTTCCCCCTCCGACGACAGATTCCGCATGAATACTCTCCCGATCATAGATCTCCGTCTCCTCTCCCAATCCGAACTCTATTGTCTCTCTCGTTTCTCCTCCTCATCGTCGTCTTCAATCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGGAAACAAACCTATTCTCGTCTTCGTCTTGCCCCTCGCAAATCTCAGTTTCCTTCCTCATCCTCCTCCTCCACAATTCGCCCCCAATCCCCTGACCGCTTCGATGAAGAGAGCGCTGAGATTGTTACTCTCTTCAAGCAGCTCTTCGTTGGAGAGTCTCATTGTGGCGTCAATGACAGCTATGATGATGGAGATGAGGACCTGGTTCTTGTTAACCACATTTATGATGAATCGGTACCTGAATCTTCCTACGCGATTTTTCACAGTATTCCTGTTGATATCATCGATAGCAGTTACGCTCCGATTAAGCGGCGGCGAGGACGACCGCGGAAGGATAGTAATCGGTTTGCTCAGAGCAATGGAAATGCGGCTGCGAACTCCATAAGCGGATGCGATAAACGAGCGGAGGAGGATGAGATCGTAATGGTAATGCTGTGA

Coding sequence (CDS)

ATGGCTTCCACAACTATGGTTGCTTCCCCCTCCGACGACAGATTCCGCATGAATACTCTCCCGATCATAGATCTCCGTCTCCTCTCCCAATCCGAACTCTATTGTCTCTCTCGTTTCTCCTCCTCATCGTCGTCTTCAATCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGGAAACAAACCTATTCTCGTCTTCGTCTTGCCCCTCGCAAATCTCAGTTTCCTTCCTCATCCTCCTCCTCCACAATTCGCCCCCAATCCCCTGACCGCTTCGATGAAGAGAGCGCTGAGATTGTTACTCTCTTCAAGCAGCTCTTCGTTGGAGAGTCTCATTGTGGCGTCAATGACAGCTATGATGATGGAGATGAGGACCTGGTTCTTGTTAACCACATTTATGATGAATCGGTACCTGAATCTTCCTACGCGATTTTTCACAGTATTCCTGTTGATATCATCGATAGCAGTTACGCTCCGATTAAGCGGCGGCGAGGACGACCGCGGAAGGATAGTAATCGGTTTGCTCAGAGCAATGGAAATGCGGCTGCGAACTCCATAAGCGGATGCGATAAACGAGCGGAGGAGGATGAGATCGTAATGGTAATGCTGTGA

Protein sequence

MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQLFVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGRPRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML

Homology

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_022952018.1 (methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita moschata] >XP_023538587.1 methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG7020217.1 Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 218
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 217

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_023002677.1 (methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSS+SQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSMSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 218
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 217

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_022952017.1 (methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 408.3 bits (1048), Expect = 4.2e-110
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_023538586.1 (methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6585296.1 Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 408.3 bits (1048), Expect = 4.2e-110
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. NCBI nr
Match: XP_023002676.1 (methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 407.1 bits (1045), Expect = 9.3e-110
Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSS+SQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSMSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. ExPASy Swiss-Prot
Match: Q9LME6 (Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-18
Identity = 79/183 (43.17%), Postives = 106/183 (57.92%), Query Frame = 0


Query: 13  DRFRMNTLPIIDLRLLSQSELYCLSRFSS---SSSSSISQSNNDDDVLIPKIDRSVFNES 72
           +R    +LP+ID RLLSQSEL  LS+ SS   SSS+S++ S   DD L PKIDRSVFNES
Sbjct: 19  NRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFNES 78

Query: 73  AGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQLFVGESHCGV 132
           AGSRKQT+ RLRLA R  Q P    S   + Q  D   EE  ++ +L + LF  +S+   
Sbjct: 79  AGSRKQTFLRLRLA-RHPQPPEEPPSP--QRQRDDSSREEQTQVASLLRSLFNVDSNQS- 138

Query: 133 NDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIID------SSYAPIKRRRGRPRK 187
            +  D+G+E+L       +  +  +SY ++    +D I       +S   IKR+RGRPRK
Sbjct: 139 KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRPRK 192

[Close]

BLAST of Carg20537 vs. ExPASy TrEMBL
Match: A0A6J1GJB3 (methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454729 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.3e-112
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 218
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 217

[Close]

BLAST of Carg20537 vs. ExPASy TrEMBL
Match: A0A6J1KK67 (methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496461 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.4e-111
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSS+SQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSMSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 218
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 217

[Close]

BLAST of Carg20537 vs. ExPASy TrEMBL
Match: A0A6J1GJ84 (methyl-CpG-binding domain-containing protein 8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454729 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. ExPASy TrEMBL
Match: A0A6J1KLZ0 (methyl-CpG-binding domain-containing protein 8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496461 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.5e-110
Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSS+SQSNNDDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSMSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 215
           PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVM 214

[Close]

BLAST of Carg20537 vs. ExPASy TrEMBL
Match: A0A6J1BS27 (methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005043 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.9e-95
Identity = 189/217 (87.10%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSISQSNNDDDVLIPK 60
           MASTTMVASPS++ FRMNTLPIIDLRLLSQSELYCLSRFSSSSSS+ SQSN+DDDVLIPK
Sbjct: 1   MASTTMVASPSNESFRMNTLPIIDLRLLSQSELYCLSRFSSSSSST-SQSNDDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRK QFPSSSSSS IRPQSP+R D ESA+I+TLFKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFPSSSSSSVIRPQSPERLDAESAKIITLFKQL 120

Query: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180
           FVG+SHC V++SY D DEDLVL+NHIYDESVP+SSYAIF SIPVDIIDSSYAPIKRRRGR
Sbjct: 121 FVGDSHCTVDNSYGDEDEDLVLINHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAANSISGCDKRAEEDEIVMVML 218
           PRKDSNRF QSNGNA  NS SGC+KRAEE+EIVMVML
Sbjct: 181 PRKDSNRFPQSNGNAVPNSKSGCEKRAEEEEIVMVML 216

[Close]

BLAST of Carg20537 vs. TAIR 10
Match: AT1G22310.2 (methyl-CPG-binding domain 8 )

HSP 1 Score: 95.1 bits (235), Expect = 7.2e-20
Identity = 79/183 (43.17%), Postives = 106/183 (57.92%), Query Frame = 0


Query: 13  DRFRMNTLPIIDLRLLSQSELYCLSRFSS---SSSSSISQSNNDDDVLIPKIDRSVFNES 72
           +R    +LP+ID RLLSQSEL  LS+ SS   SSS+S++ S   DD L PKIDRSVFNES
Sbjct: 19  NRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFNES 78

Query: 73  AGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQLFVGESHCGV 132
           AGSRKQT+ RLRLA R  Q P    S   + Q  D   EE  ++ +L + LF  +S+   
Sbjct: 79  AGSRKQTFLRLRLA-RHPQPPEEPPSP--QRQRDDSSREEQTQVASLLRSLFNVDSNQS- 138

Query: 133 NDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIID------SSYAPIKRRRGRPRK 187
            +  D+G+E+L       +  +  +SY ++    +D I       +S   IKR+RGRPRK
Sbjct: 139 KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRPRK 192

The following BLAST results are available for this feature:

BLAST of Carg20537 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952018.1	1.3e-111	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita moscha...	[more]
XP_023002677.1	2.9e-111	99.54	methyl-CpG-binding domain-containing protein 8-like isoform X2 [Cucurbita maxima...	[more]
XP_022952017.1	4.2e-110	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita moscha...	[more]
XP_023538586.1	4.2e-110	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita pepo s...	[more]
XP_023002676.1	9.3e-110	99.53	methyl-CpG-binding domain-containing protein 8-like isoform X1 [Cucurbita maxima...	[more]

BLAST of Carg20537 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LME6	1.0e-18	43.17	Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg20537 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJB3	6.3e-112	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1KK67	1.4e-111	99.54	methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1GJ84	2.0e-110	100.00	methyl-CpG-binding domain-containing protein 8-like isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1KLZ0	4.5e-110	99.53	methyl-CpG-binding domain-containing protein 8-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1BS27	6.9e-95	87.10	methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Momordica charantia...	[more]

BLAST of Carg20537 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22310.2	7.2e-20	43.17	methyl-CPG-binding domain 8	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..202
None	No IPR available	PANTHER	PTHR37701:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 6..193
IPR037472	Methyl-CpG-binding domain-containing protein 8	PANTHER	PTHR37701	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 6..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20537-RA	Carg20537-RA	mRNA